RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 USHBP1Q8N6Y0 703 aa10.22□□□□□ -0.77
CIITA-214ENST00000636238 LINC00116Q8NCU8 138 aa10.22□□□□□ -0.77
CIITA-214ENST00000636238 RTCBQ9Y3I0 505 aaKnown RBP10.22□□□□□ -0.77
CIITA-214ENST00000636238 TRAPPC3LQ5T215 181 aa10.21□□□□□ -0.77
CIITA-214ENST00000636238 IFNL2Q8IZJ0 200 aa10.21□□□□□ -0.77
CIITA-214ENST00000636238 BCS1LQ9Y276 419 aa10.21□□□□□ -0.77
CIITA-214ENST00000636238 ST20-MTHFSA0A0A6YYL1 179 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 ERVV-2B6SEH9 535 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 HSP90AB1P08238 724 aaKnown RBP10.2□□□□□ -0.78
CIITA-214ENST00000636238 KDRP35968 1356 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 ATP6V1AP38606 617 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 WASHC2AQ641Q2 1341 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 ARHGAP27Q6ZUM4 889 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 CNTNAP4Q9C0A0 1308 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 GGNBP2Q9H3C7 697 aa10.2□□□□□ -0.78
CIITA-214ENST00000636238 TOGARAM1Q9Y4F4 1720 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 FCHSD2O94868 740 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 FBLN1P23142 703 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 PRELPP51888 382 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 ITPK1Q13572 414 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 SMC1BQ8NDV3 1235 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 NMRK2Q9NPI5 230 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 PIM2Q9P1W9 311 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 PARP3Q9Y6F1 533 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 PKD1L3Q7Z443 1732 aa10.19□□□□□ -0.78
CIITA-214ENST00000636238 RPS6KA4O75676 772 aa10.18□□□□□ -0.78
CIITA-214ENST00000636238 PHKG2P15735 406 aa10.18□□□□□ -0.78
CIITA-214ENST00000636238 DALRD3Q5D0E6 543 aaKnown RBP10.18□□□□□ -0.78
CIITA-214ENST00000636238 C9orf131Q5VYM1 1079 aa10.18□□□□□ -0.78
CIITA-214ENST00000636238 DCAF5Q96JK2 942 aa10.18□□□□□ -0.78
CIITA-214ENST00000636238 ATG3Q9NT62 314 aa10.18□□□□□ -0.78
CIITA-214ENST00000636238 UBR3Q6ZT12 1888 aa10.18□□□□□ -0.78
CIITA-214ENST00000636238 TAF1LQ8IZX4 1826 aa10.18□□□□□ -0.78
CIITA-214ENST00000636238 A0A0G2JLW4 131 aa10.17□□□□□ -0.78
CIITA-214ENST00000636238 GYS1P13807 737 aa10.17□□□□□ -0.78
CIITA-214ENST00000636238 DPEP1P16444 411 aa10.17□□□□□ -0.78
CIITA-214ENST00000636238 RFC4P35249 363 aa10.17□□□□□ -0.78
CIITA-214ENST00000636238 ASAP1Q9ULH1 1129 aa10.17□□□□□ -0.78
CIITA-214ENST00000636238 ZNF831Q5JPB2 1677 aa10.17□□□□□ -0.78
CIITA-214ENST00000636238 HSPA5P11021 654 aaKnown RBP10.16□□□□□ -0.78
CIITA-214ENST00000636238 TNS4Q8IZW8 715 aa10.16□□□□□ -0.78
CIITA-214ENST00000636238 ARHGEF1Q92888 912 aaKnown RBP10.16□□□□□ -0.78
CIITA-214ENST00000636238 MAP2P11137 1827 aaKnown RBP10.16□□□□□ -0.78
CIITA-214ENST00000636238 KIF13BQ9NQT8 1826 aa10.16□□□□□ -0.78
CIITA-214ENST00000636238 KCNA3P22001 575 aa10.15□□□□□ -0.78
CIITA-214ENST00000636238 COL13A1Q5TAT6 717 aaPredicted RBP10.15□□□□□ -0.78
CIITA-214ENST00000636238 EYA1Q99502 592 aa10.15□□□□□ -0.78
CIITA-214ENST00000636238 AMOTQ4VCS5 1084 aa10.14□□□□□ -0.79
CIITA-214ENST00000636238 DIEXFQ68CQ4 756 aaKnown RBP10.14□□□□□ -0.79
CIITA-214ENST00000636238 RNF181Q9P0P0 153 aa10.14□□□□□ -0.79
CIITA-214ENST00000636238 WWC3Q9ULE0 1092 aa10.14□□□□□ -0.79
CIITA-214ENST00000636238 EMILIN1Q9Y6C2 1016 aa10.14□□□□□ -0.79
CIITA-214ENST00000636238 KDM6AO15550 1401 aaPredicted RBP10.14□□□□□ -0.79
CIITA-214ENST00000636238 C4AP0C0L4 1744 aa10.13□□□□□ -0.79
CIITA-214ENST00000636238 WDR90Q96KV7 1748 aa10.13□□□□□ -0.79
CIITA-214ENST00000636238 VEGFAP15692 232 aaPredicted RBP10.13□□□□□ -0.79
CIITA-214ENST00000636238 EIF4G2P78344 907 aaKnown RBP eCLIP10.13□□□□□ -0.79
CIITA-214ENST00000636238 KIAA1551Q9HCM1 1747 aa10.13□□□□□ -0.79
CIITA-214ENST00000636238 USP42Q9H9J4 1324 aaKnown RBP10.12□□□□□ -0.79
CIITA-214ENST00000636238 PLEKHO1Q53GL0 409 aaPredicted RBP10.12□□□□□ -0.79
CIITA-214ENST00000636238 SMIM5Q71RC9 77 aa10.12□□□□□ -0.79
CIITA-214ENST00000636238 SLC4A9Q96Q91 983 aa10.12□□□□□ -0.79
CIITA-214ENST00000636238 RGPD2P0DJD1 1756 aa10.11□□□□□ -0.79
CIITA-214ENST00000636238 GLTPD2A6NH11 291 aa10.11□□□□□ -0.79
CIITA-214ENST00000636238 LMNB1P20700 586 aa10.11□□□□□ -0.79
CIITA-214ENST00000636238 RBM42Q9BTD8 480 aaKnown RBP10.11□□□□□ -0.79
CIITA-214ENST00000636238 RRAGCQ9HB90 399 aa10.11□□□□□ -0.79
CIITA-214ENST00000636238 PDZRN3Q9UPQ7 1066 aa10.11□□□□□ -0.79
CIITA-214ENST00000636238 KCPQ6ZWJ8 1503 aa10.11□□□□□ -0.79
CIITA-214ENST00000636238 ANKRD26Q9UPS8 1709 aa10.1□□□□□ -0.79
CIITA-214ENST00000636238 ITGB4P16144 1822 aa10.1□□□□□ -0.79
CIITA-214ENST00000636238 PPM1GO15355 546 aaPredicted RBP10.1□□□□□ -0.79
CIITA-214ENST00000636238 TM4SF1P30408 202 aa10.1□□□□□ -0.79
CIITA-214ENST00000636238 CABP4P57796 275 aa10.1□□□□□ -0.79
CIITA-214ENST00000636238 CARD14Q9BXL6 1004 aa10.1□□□□□ -0.79
CIITA-214ENST00000636238 POLKQ9UBT6 870 aa10.1□□□□□ -0.79
CIITA-214ENST00000636238 TNRC6CQ9HCJ0 1690 aaKnown RBP10.09□□□□□ -0.79
CIITA-214ENST00000636238 POLRMTO00411 1230 aaKnown RBP10.09□□□□□ -0.79
CIITA-214ENST00000636238 CRKLP46109 303 aaKnown RBP10.09□□□□□ -0.79
CIITA-214ENST00000636238 DDR1Q08345 913 aa10.09□□□□□ -0.79
CIITA-214ENST00000636238 EIF4A2Q14240 407 aaKnown RBP10.09□□□□□ -0.79
CIITA-214ENST00000636238 HSPA1AP0DMV8 641 aaKnown RBP10.08□□□□□ -0.8
CIITA-214ENST00000636238 HSPA1BP0DMV9 641 aaKnown RBP10.08□□□□□ -0.8
CIITA-214ENST00000636238 FKBP8Q14318 412 aa10.08□□□□□ -0.8
CIITA-214ENST00000636238 ARFGEF1Q9Y6D6 1849 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 ZPR1O75312 459 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 MTHFSP49914 203 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 HTRA3P83110 453 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 DDX10Q13206 875 aaKnown RBP10.07□□□□□ -0.8
CIITA-214ENST00000636238 C1orf141Q5JVX7 400 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 DPY19L2Q6NUT2 758 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 ZNF530Q6P9A1 599 aaPredicted RBP10.07□□□□□ -0.8
CIITA-214ENST00000636238 TTLL6Q8N841 843 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 CREBZFQ9NS37 354 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 KIF20BQ96Q89 1820 aa10.07□□□□□ -0.8
CIITA-214ENST00000636238 PRDM10Q9NQV6 1147 aa10.06□□□□□ -0.8
CIITA-214ENST00000636238 BRCA1P38398 1863 aaKnown RBP10.06□□□□□ -0.8
CIITA-214ENST00000636238 SOS1Q07889 1333 aaPredicted RBP10.06□□□□□ -0.8
CIITA-214ENST00000636238 COL5A3P25940 1745 aaPredicted RBP10.05□□□□□ -0.8
CIITA-214ENST00000636238 CHRNA5P30532 468 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms