RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CHL1O00533 1208 aa26.79■■□□□ 1.88
CLN3-245ENST00000636172 RXRBP28702 533 aa26.79■■□□□ 1.88
CLN3-245ENST00000636172 TAF7Q15545 349 aaPredicted RBP26.79■■□□□ 1.88
CLN3-245ENST00000636172 SLC52A2Q9HAB3 445 aa26.79■■□□□ 1.88
CLN3-245ENST00000636172 DOT1LQ8TEK3 1739 aa26.78■■□□□ 1.88
CLN3-245ENST00000636172 MBIPQ9NS73 344 aa26.78■■□□□ 1.88
CLN3-245ENST00000636172 ERVV-2B6SEH9 535 aa26.77■■□□□ 1.88
CLN3-245ENST00000636172 CENPBP07199 599 aaPredicted RBP26.77■■□□□ 1.88
CLN3-245ENST00000636172 MIS18AQ9NYP9 233 aa26.77■■□□□ 1.88
CLN3-245ENST00000636172 KDM3BQ7LBC6 1761 aa26.77■■□□□ 1.88
CLN3-245ENST00000636172 ITGB4P16144 1822 aa26.76■■□□□ 1.87
CLN3-245ENST00000636172 CABP4P57796 275 aa26.75■■□□□ 1.87
CLN3-245ENST00000636172 NFATC2IPQ8NCF5 419 aa26.75■■□□□ 1.87
CLN3-245ENST00000636172 BABAM1Q9NWV8 329 aa26.75■■□□□ 1.87
CLN3-245ENST00000636172 TSPYL4Q9UJ04 414 aa26.75■■□□□ 1.87
CLN3-245ENST00000636172 RGS12O14924 1447 aa26.73■■□□□ 1.87
CLN3-245ENST00000636172 BTBD11A6QL63 1104 aa26.72■■□□□ 1.87
CLN3-245ENST00000636172 KAT6BQ8WYB5 2073 aa26.71■■□□□ 1.87
CLN3-245ENST00000636172 PAPPAQ13219 1627 aa26.7■■□□□ 1.86
CLN3-245ENST00000636172 BCL9O00512 1426 aa26.7■■□□□ 1.86
CLN3-245ENST00000636172 FAM182BQ5T319 152 aa26.7■■□□□ 1.86
CLN3-245ENST00000636172 EXOSC9Q06265 439 aaKnown RBP26.69■■□□□ 1.86
CLN3-245ENST00000636172 KRT27Q7Z3Y8 459 aa26.69■■□□□ 1.86
CLN3-245ENST00000636172 TMOD3Q9NYL9 352 aa26.69■■□□□ 1.86
CLN3-245ENST00000636172 PRIM1P49642 420 aaKnown RBP26.68■■□□□ 1.86
CLN3-245ENST00000636172 KCNQ3O43525 872 aa26.67■■□□□ 1.86
CLN3-245ENST00000636172 ACSBG1Q96GR2 724 aa26.67■■□□□ 1.86
CLN3-245ENST00000636172 PIGBQ92521 554 aa26.66■■□□□ 1.86
CLN3-245ENST00000636172 SBF2Q86WG5 1849 aa26.66■■□□□ 1.86
CLN3-245ENST00000636172 SLC39A6Q13433 755 aa26.65■■□□□ 1.86
CLN3-245ENST00000636172 SYTL4Q96C24 671 aaPredicted RBP26.65■■□□□ 1.86
CLN3-245ENST00000636172 NHSQ6T4R5 1651 aa26.65■■□□□ 1.86
CLN3-245ENST00000636172 KRT24Q2M2I5 525 aa26.65■■□□□ 1.86
CLN3-245ENST00000636172 ZNF790Q6PG37 636 aa26.65■■□□□ 1.86
CLN3-245ENST00000636172 UBR2Q8IWV8 1755 aa26.64■■□□□ 1.86
CLN3-245ENST00000636172 C8orf58Q8NAV2 365 aa26.64■■□□□ 1.85
CLN3-245ENST00000636172 EIF4A1P60842 406 aaKnown RBP26.63■■□□□ 1.85
CLN3-245ENST00000636172 TSPYL6Q8N831 410 aa26.63■■□□□ 1.85
CLN3-245ENST00000636172 KCNQ2O43526 872 aa26.62■■□□□ 1.85
CLN3-245ENST00000636172 KCPQ6ZWJ8 1503 aa26.6■■□□□ 1.85
CLN3-245ENST00000636172 EP400Q96L91 3159 aa26.6■■□□□ 1.85
CLN3-245ENST00000636172 ELL2O00472 640 aaPredicted RBP26.6■■□□□ 1.85
CLN3-245ENST00000636172 TTC5Q8N0Z6 440 aa26.6■■□□□ 1.85
CLN3-245ENST00000636172 HEG1Q9ULI3 1381 aa26.59■■□□□ 1.85
CLN3-245ENST00000636172 CT47B1P0C2W7 299 aaPredicted RBP26.59■■□□□ 1.85
CLN3-245ENST00000636172 TWISTNBQ3B726 338 aaPredicted RBP26.59■■□□□ 1.85
CLN3-245ENST00000636172 FAM196AQ6ZSG2 479 aa26.59■■□□□ 1.85
CLN3-245ENST00000636172 ATG3Q9NT62 314 aa26.59■■□□□ 1.85
CLN3-245ENST00000636172 ASAP1Q9ULH1 1129 aa26.59■■□□□ 1.85
CLN3-245ENST00000636172 BTAF1O14981 1849 aa26.57■■□□□ 1.84
CLN3-245ENST00000636172 VAMP4O75379 141 aa26.57■■□□□ 1.84
CLN3-245ENST00000636172 PTF1AQ7RTS3 328 aa26.57■■□□□ 1.84
CLN3-245ENST00000636172 ZNF496Q96IT1 587 aaPredicted RBP26.57■■□□□ 1.84
CLN3-245ENST00000636172 RCAN3Q9UKA8 241 aa26.56■■□□□ 1.84
CLN3-245ENST00000636172 FMNL2Q96PY5 1086 aa26.55■■□□□ 1.84
CLN3-245ENST00000636172 C5P01031 1676 aa26.55■■□□□ 1.84
CLN3-245ENST00000636172 UPF1Q92900 1129 aaKnown RBP eCLIP26.55■■□□□ 1.84
CLN3-245ENST00000636172 GIGYF1O75420 1035 aaPredicted RBP26.53■■□□□ 1.84
CLN3-245ENST00000636172 SOS1Q07889 1333 aaPredicted RBP26.52■■□□□ 1.84
CLN3-245ENST00000636172 PTCD1O75127 700 aaKnown RBP26.52■■□□□ 1.84
CLN3-245ENST00000636172 HOXB7P09629 217 aa26.52■■□□□ 1.84
CLN3-245ENST00000636172 RARSP54136 660 aaKnown RBP26.51■■□□□ 1.83
CLN3-245ENST00000636172 BCL11BQ9C0K0 894 aaPredicted RBP26.51■■□□□ 1.83
CLN3-245ENST00000636172 PRAMEF22A3QJZ6 481 aa26.5■■□□□ 1.83
CLN3-245ENST00000636172 ZNF428Q96B54 188 aa26.5■■□□□ 1.83
CLN3-245ENST00000636172 PALLDQ8WX93 1383 aa26.49■■□□□ 1.83
CLN3-245ENST00000636172 LAMB4A4D0S4 1761 aa26.49■■□□□ 1.83
CLN3-245ENST00000636172 SNRPA1P09661 255 aaKnown RBP26.49■■□□□ 1.83
CLN3-245ENST00000636172 SSH1Q8WYL5 1049 aa26.48■■□□□ 1.83
CLN3-245ENST00000636172 SMARCC1Q92922 1105 aaPredicted RBP26.48■■□□□ 1.83
CLN3-245ENST00000636172 TRIM37O94972 964 aa26.47■■□□□ 1.83
CLN3-245ENST00000636172 RBM42Q9BTD8 480 aaKnown RBP26.47■■□□□ 1.83
CLN3-245ENST00000636172 BCAR3O75815 825 aa26.46■■□□□ 1.83
CLN3-245ENST00000636172 ALDH1L2Q3SY69 923 aa26.46■■□□□ 1.83
CLN3-245ENST00000636172 SLC4A9Q96Q91 983 aa26.46■■□□□ 1.83
CLN3-245ENST00000636172 BCL2L13Q9BXK5 485 aa26.46■■□□□ 1.83
CLN3-245ENST00000636172 TJP1Q07157 1748 aa26.45■■□□□ 1.83
CLN3-245ENST00000636172 HDGFL1Q5TGJ6 251 aa26.45■■□□□ 1.83
CLN3-245ENST00000636172 VSIG10Q8N0Z9 540 aa26.45■■□□□ 1.83
CLN3-245ENST00000636172 TCERG1O14776 1098 aaKnown RBP26.44■■□□□ 1.82
CLN3-245ENST00000636172 NECTIN2Q92692 538 aa26.44■■□□□ 1.82
CLN3-245ENST00000636172 CICQ96RK0 1608 aaPredicted RBP26.44■■□□□ 1.82
CLN3-245ENST00000636172 LY75O60449 1722 aa26.44■■□□□ 1.82
CLN3-245ENST00000636172 EIF2S2P20042 333 aaKnown RBP26.44■■□□□ 1.82
CLN3-245ENST00000636172 SMC4Q9NTJ3 1288 aa26.44■■□□□ 1.82
CLN3-245ENST00000636172 SUPT16HQ9Y5B9 1047 aaKnown RBP26.44■■□□□ 1.82
CLN3-245ENST00000636172 USP16Q9Y5T5 823 aa26.44■■□□□ 1.82
CLN3-245ENST00000636172 ZNF831Q5JPB2 1677 aa26.43■■□□□ 1.82
CLN3-245ENST00000636172 CCDC30Q5VVM6 783 aa26.43■■□□□ 1.82
CLN3-245ENST00000636172 LOC102724428A0A0B4J2F2 783 aa26.42■■□□□ 1.82
CLN3-245ENST00000636172 SIK1P57059 783 aa26.42■■□□□ 1.82
CLN3-245ENST00000636172 TNS1Q9HBL0 1735 aaKnown RBP26.42■■□□□ 1.82
CLN3-245ENST00000636172 MRPL50Q8N5N7 158 aaKnown RBP26.41■■□□□ 1.82
CLN3-245ENST00000636172 RNF123Q5XPI4 1314 aa26.4■■□□□ 1.82
CLN3-245ENST00000636172 DNAJC10Q8IXB1 793 aa26.4■■□□□ 1.82
CLN3-245ENST00000636172 CHMP4AQ9BY43 222 aa26.4■■□□□ 1.82
CLN3-245ENST00000636172 CACNA1FO60840 1977 aa26.4■■□□□ 1.82
CLN3-245ENST00000636172 BRPF1P55201 1214 aaPredicted RBP26.39■■□□□ 1.81
CLN3-245ENST00000636172 STK31Q9BXU1 1019 aa26.39■■□□□ 1.81
CLN3-245ENST00000636172 CHPF2Q9P2E5 772 aa26.39■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms