RNA–Protein interactions for RNA: ENST00000628347.1

SOX2-OT-247, SOX2 overlapping transcript, humanhuman

TSL 5

Gene SOX2-OT, Length 445 nt, Biotype sense overlapping.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-OT-247ENST00000628347 LINC00116Q8NCU8 138 aa17.03■□□□□ 0.32
SOX2-OT-247ENST00000628347 DCAF5Q96JK2 942 aa17.03■□□□□ 0.32
SOX2-OT-247ENST00000628347 ATG3Q9NT62 314 aa17.03■□□□□ 0.32
SOX2-OT-247ENST00000628347 KDRP35968 1356 aa17.02■□□□□ 0.32
SOX2-OT-247ENST00000628347 ZNF784Q8NCA9 323 aaPredicted RBP17.02■□□□□ 0.32
SOX2-OT-247ENST00000628347 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.01■□□□□ 0.31
SOX2-OT-247ENST00000628347 ATP6V1AP38606 617 aa17.01■□□□□ 0.31
SOX2-OT-247ENST00000628347 ITPK1Q13572 414 aa17.01■□□□□ 0.31
SOX2-OT-247ENST00000628347 CD2APQ9Y5K6 639 aa17.01■□□□□ 0.31
SOX2-OT-247ENST00000628347 KDM6AO15550 1401 aaPredicted RBP17.01■□□□□ 0.31
SOX2-OT-247ENST00000628347 IL13P35225 146 aa17■□□□□ 0.31
SOX2-OT-247ENST00000628347 ZNF530Q6P9A1 599 aaPredicted RBP17■□□□□ 0.31
SOX2-OT-247ENST00000628347 AEBP1Q8IUX7 1158 aa16.99■□□□□ 0.31
SOX2-OT-247ENST00000628347 PER1O15534 1290 aaPredicted RBP16.98■□□□□ 0.31
SOX2-OT-247ENST00000628347 GRIN3BO60391 1043 aa16.98■□□□□ 0.31
SOX2-OT-247ENST00000628347 PHF14O94880 888 aa16.98■□□□□ 0.31
SOX2-OT-247ENST00000628347 SULT6B1Q6IMI4 303 aa16.98■□□□□ 0.31
SOX2-OT-247ENST00000628347 COL5A3P25940 1745 aaPredicted RBP16.98■□□□□ 0.31
SOX2-OT-247ENST00000628347 GNPATO15228 680 aa16.97■□□□□ 0.31
SOX2-OT-247ENST00000628347 C1orf141Q5JVX7 400 aa16.97■□□□□ 0.31
SOX2-OT-247ENST00000628347 RC3H1Q5TC82 1133 aaKnown RBP16.97■□□□□ 0.31
SOX2-OT-247ENST00000628347 SLC4A9Q96Q91 983 aa16.97■□□□□ 0.31
SOX2-OT-247ENST00000628347 YBX3P16989 372 aaKnown RBP eCLIP16.96■□□□□ 0.31
SOX2-OT-247ENST00000628347 CABP4P57796 275 aa16.96■□□□□ 0.31
SOX2-OT-247ENST00000628347 SMIM5Q71RC9 77 aa16.96■□□□□ 0.31
SOX2-OT-247ENST00000628347 PELP1Q8IZL8 1130 aaKnown RBP16.96■□□□□ 0.31
SOX2-OT-247ENST00000628347 CNTNAP4Q9C0A0 1308 aa16.96■□□□□ 0.3
SOX2-OT-247ENST00000628347 MTHFSP49914 203 aa16.95■□□□□ 0.3
SOX2-OT-247ENST00000628347 CICQ96RK0 1608 aaPredicted RBP16.95■□□□□ 0.3
SOX2-OT-247ENST00000628347 SCN11AQ9UI33 1791 aa16.94■□□□□ 0.3
SOX2-OT-247ENST00000628347 NPC1L1Q9UHC9 1359 aa16.94■□□□□ 0.3
SOX2-OT-247ENST00000628347 RBM42Q9BTD8 480 aaKnown RBP16.94■□□□□ 0.3
SOX2-OT-247ENST00000628347 RTCBQ9Y3I0 505 aaKnown RBP16.93■□□□□ 0.3
SOX2-OT-247ENST00000628347 MYH14Q7Z406 1995 aaKnown RBP16.92■□□□□ 0.3
SOX2-OT-247ENST00000628347 AKAP4Q5JQC9 854 aa16.92■□□□□ 0.3
SOX2-OT-247ENST00000628347 TRAPPC3LQ5T215 181 aa16.92■□□□□ 0.3
SOX2-OT-247ENST00000628347 RPS6KA4O75676 772 aa16.91■□□□□ 0.3
SOX2-OT-247ENST00000628347 NFATC2IPQ8NCF5 419 aa16.91■□□□□ 0.3
SOX2-OT-247ENST00000628347 KIF13BQ9NQT8 1826 aa16.91■□□□□ 0.3
SOX2-OT-247ENST00000628347 MRC1P22897 1456 aa16.9■□□□□ 0.3
SOX2-OT-247ENST00000628347 TJP1Q07157 1748 aa16.9■□□□□ 0.3
SOX2-OT-247ENST00000628347 ADAMTS7Q9UKP4 1686 aa16.89■□□□□ 0.29
SOX2-OT-247ENST00000628347 NLGN1Q8N2Q7 840 aa16.89■□□□□ 0.29
SOX2-OT-247ENST00000628347 ARHGEF1Q92888 912 aaKnown RBP16.89■□□□□ 0.29
SOX2-OT-247ENST00000628347 COL3A1P02461 1466 aaPredicted RBP16.88■□□□□ 0.29
SOX2-OT-247ENST00000628347 C4AP0C0L4 1744 aa16.88■□□□□ 0.29
SOX2-OT-247ENST00000628347 DIAPH1O60610 1272 aaKnown RBP16.88■□□□□ 0.29
SOX2-OT-247ENST00000628347 MMP10P09238 476 aa16.88■□□□□ 0.29
SOX2-OT-247ENST00000628347 CC2D1BQ5T0F9 858 aaKnown RBP16.88■□□□□ 0.29
SOX2-OT-247ENST00000628347 SLC52A2Q9HAB3 445 aa16.88■□□□□ 0.29
SOX2-OT-247ENST00000628347 VIRMAQ69YN4 1812 aaKnown RBP16.88■□□□□ 0.29
SOX2-OT-247ENST00000628347 PTCD1O75127 700 aaKnown RBP16.87■□□□□ 0.29
SOX2-OT-247ENST00000628347 GYS1P13807 737 aa16.87■□□□□ 0.29
SOX2-OT-247ENST00000628347 KIAA1551Q9HCM1 1747 aa16.87■□□□□ 0.29
SOX2-OT-247ENST00000628347 RNMTO43148 476 aaKnown RBP16.86■□□□□ 0.29
SOX2-OT-247ENST00000628347 HMOX1P09601 288 aa16.86■□□□□ 0.29
SOX2-OT-247ENST00000628347 RFC4P35249 363 aa16.86■□□□□ 0.29
SOX2-OT-247ENST00000628347 CRKLP46109 303 aaKnown RBP16.86■□□□□ 0.29
SOX2-OT-247ENST00000628347 C10orf71Q711Q0 1435 aa16.86■□□□□ 0.29
SOX2-OT-247ENST00000628347 C1QTNF8P60827 252 aa16.85■□□□□ 0.29
SOX2-OT-247ENST00000628347 LGR6Q9HBX8 967 aa16.85■□□□□ 0.29
SOX2-OT-247ENST00000628347 PXDNLA1KZ92 1463 aa16.85■□□□□ 0.29
SOX2-OT-247ENST00000628347 TGFB2P61812 414 aa16.84■□□□□ 0.29
SOX2-OT-247ENST00000628347 MTHFSDQ2M296 383 aaKnown RBP16.84■□□□□ 0.29
SOX2-OT-247ENST00000628347 ADCY9O60503 1353 aa16.84■□□□□ 0.29
SOX2-OT-247ENST00000628347 KCPQ6ZWJ8 1503 aa16.83■□□□□ 0.28
SOX2-OT-247ENST00000628347 CCDC87Q9NVE4 849 aa16.83■□□□□ 0.28
SOX2-OT-247ENST00000628347 ATP10DQ9P241 1426 aa16.82■□□□□ 0.28
SOX2-OT-247ENST00000628347 USP42Q9H9J4 1324 aaKnown RBP16.82■□□□□ 0.28
SOX2-OT-247ENST00000628347 GIGYF1O75420 1035 aaPredicted RBP16.82■□□□□ 0.28
SOX2-OT-247ENST00000628347 INTS5Q6P9B9 1019 aaKnown RBP16.82■□□□□ 0.28
SOX2-OT-247ENST00000628347 DNAJC10Q8IXB1 793 aa16.81■□□□□ 0.28
SOX2-OT-247ENST00000628347 PARP3Q9Y6F1 533 aa16.81■□□□□ 0.28
SOX2-OT-247ENST00000628347 UBR2Q8IWV8 1755 aa16.81■□□□□ 0.28
SOX2-OT-247ENST00000628347 N4BP2Q86UW6 1770 aaPredicted RBP16.8■□□□□ 0.28
SOX2-OT-247ENST00000628347 VSIG10Q8N0Z9 540 aa16.8■□□□□ 0.28
SOX2-OT-247ENST00000628347 SOS1Q07889 1333 aaPredicted RBP16.79■□□□□ 0.28
SOX2-OT-247ENST00000628347 CYP19A1P11511 503 aaPredicted RBP16.79■□□□□ 0.28
SOX2-OT-247ENST00000628347 SLC39A6Q13433 755 aa16.79■□□□□ 0.28
SOX2-OT-247ENST00000628347 GAS2L2Q8NHY3 880 aa16.79■□□□□ 0.28
SOX2-OT-247ENST00000628347 SRP68Q9UHB9 627 aaKnown RBP16.79■□□□□ 0.28
SOX2-OT-247ENST00000628347 BRCA1P38398 1863 aaKnown RBP16.79■□□□□ 0.28
SOX2-OT-247ENST00000628347 FKBP8Q14318 412 aa16.78■□□□□ 0.28
SOX2-OT-247ENST00000628347 U2SURPO15042 1029 aaKnown RBP16.77■□□□□ 0.28
SOX2-OT-247ENST00000628347 WWC3Q9ULE0 1092 aa16.77■□□□□ 0.28
SOX2-OT-247ENST00000628347 SIPA1L3O60292 1781 aaPredicted RBP16.77■□□□□ 0.27
SOX2-OT-247ENST00000628347 A0A0G2JLW4 131 aa16.76■□□□□ 0.27
SOX2-OT-247ENST00000628347 GNAT3A8MTJ3 354 aa16.76■□□□□ 0.27
SOX2-OT-247ENST00000628347 DPEP1P16444 411 aa16.76■□□□□ 0.27
SOX2-OT-247ENST00000628347 TM4SF1P30408 202 aa16.76■□□□□ 0.27
SOX2-OT-247ENST00000628347 DDR1Q08345 913 aa16.76■□□□□ 0.27
SOX2-OT-247ENST00000628347 ZPR1O75312 459 aa16.75■□□□□ 0.27
SOX2-OT-247ENST00000628347 IL17REQ8NFR9 667 aa16.75■□□□□ 0.27
SOX2-OT-247ENST00000628347 CFAP53Q96M91 514 aa16.75■□□□□ 0.27
SOX2-OT-247ENST00000628347 COL15A1P39059 1388 aa16.75■□□□□ 0.27
SOX2-OT-247ENST00000628347 ARFGEF1Q9Y6D6 1849 aa16.75■□□□□ 0.27
SOX2-OT-247ENST00000628347 SENP3-EIF4A1A0A087X0R7 540 aa16.74■□□□□ 0.27
SOX2-OT-247ENST00000628347 POLRMTO00411 1230 aaKnown RBP16.74■□□□□ 0.27
SOX2-OT-247ENST00000628347 KCNA3P22001 575 aa16.74■□□□□ 0.27
SOX2-OT-247ENST00000628347 GPBP1L1Q9HC44 474 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms