RNA–Protein interactions for RNA: ENST00000628078.2

TCF4-262, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-262	ENST00000628078	GOLGB1	Q14789	3259 aa	Known RBP	18.54	■□□□□ 0.56
TCF4-262	ENST00000628078	CCER1	Q8TC90	406 aa	Predicted RBP	18.54	■□□□□ 0.56
TCF4-262	ENST00000628078	IGSF1	Q8N6C5	1336 aa		18.53	■□□□□ 0.56
TCF4-262	ENST00000628078	HMGB2	P26583	209 aa	Known RBP	18.53	■□□□□ 0.56
TCF4-262	ENST00000628078	SSFA2	P28290	1259 aa		18.53	■□□□□ 0.56
TCF4-262	ENST00000628078	MORC1	Q86VD1	984 aa		18.53	■□□□□ 0.56
TCF4-262	ENST00000628078	AEBP1	Q8IUX7	1158 aa		18.53	■□□□□ 0.56
TCF4-262	ENST00000628078	SLC4A9	Q96Q91	983 aa		18.53	■□□□□ 0.56
TCF4-262	ENST00000628078	PLEKHO1	Q53GL0	409 aa	Predicted RBP	18.52	■□□□□ 0.56
TCF4-262	ENST00000628078	ZNF530	Q6P9A1	599 aa	Predicted RBP	18.52	■□□□□ 0.56
TCF4-262	ENST00000628078	CLSPN	Q9HAW4	1339 aa		18.5	■□□□□ 0.55
TCF4-262	ENST00000628078	MMP10	P09238	476 aa		18.5	■□□□□ 0.55
TCF4-262	ENST00000628078	CABP4	P57796	275 aa		18.5	■□□□□ 0.55
TCF4-262	ENST00000628078	TRAPPC3L	Q5T215	181 aa		18.5	■□□□□ 0.55
TCF4-262	ENST00000628078	PTCD1	O75127	700 aa	Known RBP	18.49	■□□□□ 0.55
TCF4-262	ENST00000628078	RTCB	Q9Y3I0	505 aa	Known RBP	18.49	■□□□□ 0.55
TCF4-262	ENST00000628078	ATP10D	Q9P241	1426 aa		18.49	■□□□□ 0.55
TCF4-262	ENST00000628078	ERVV-2	B6SEH9	535 aa		18.48	■□□□□ 0.55
TCF4-262	ENST00000628078	MTHFS	P49914	203 aa		18.48	■□□□□ 0.55
TCF4-262	ENST00000628078	SULT6B1	Q6IMI4	303 aa		18.48	■□□□□ 0.55
TCF4-262	ENST00000628078	ARHGEF1	Q92888	912 aa	Known RBP	18.48	■□□□□ 0.55
TCF4-262	ENST00000628078	DCAF5	Q96JK2	942 aa		18.48	■□□□□ 0.55
TCF4-262	ENST00000628078	CNGB1	Q14028	1251 aa	Predicted RBP	18.47	■□□□□ 0.55
TCF4-262	ENST00000628078	NFATC2IP	Q8NCF5	419 aa		18.47	■□□□□ 0.55
TCF4-262	ENST00000628078		A0A0G2JLW4	131 aa		18.46	■□□□□ 0.55
TCF4-262	ENST00000628078	C1orf141	Q5JVX7	400 aa		18.46	■□□□□ 0.55
TCF4-262	ENST00000628078	GPBP1L1	Q9HC44	474 aa	Predicted RBP	18.46	■□□□□ 0.55
TCF4-262	ENST00000628078	KNSTRN	Q9Y448	316 aa		18.46	■□□□□ 0.55
TCF4-262	ENST00000628078	KDM6A	O15550	1401 aa	Predicted RBP	18.46	■□□□□ 0.55
TCF4-262	ENST00000628078	HSP90AB1	P08238	724 aa	Known RBP	18.45	■□□□□ 0.54
TCF4-262	ENST00000628078	N4BP2	Q86UW6	1770 aa	Predicted RBP	18.45	■□□□□ 0.54
TCF4-262	ENST00000628078	KDR	P35968	1356 aa		18.44	■□□□□ 0.54
TCF4-262	ENST00000628078	RFC4	P35249	363 aa		18.44	■□□□□ 0.54
TCF4-262	ENST00000628078	AMOT	Q4VCS5	1084 aa		18.44	■□□□□ 0.54
TCF4-262	ENST00000628078	BCS1L	Q9Y276	419 aa		18.43	■□□□□ 0.54
TCF4-262	ENST00000628078	MYH14	Q7Z406	1995 aa	Known RBP	18.42	■□□□□ 0.54
TCF4-262	ENST00000628078	RPS6KA4	O75676	772 aa		18.42	■□□□□ 0.54
TCF4-262	ENST00000628078	HMOX1	P09601	288 aa		18.42	■□□□□ 0.54
TCF4-262	ENST00000628078	GYS1	P13807	737 aa		18.42	■□□□□ 0.54
TCF4-262	ENST00000628078	IL13	P35225	146 aa		18.42	■□□□□ 0.54
TCF4-262	ENST00000628078	NLGN1	Q8N2Q7	840 aa		18.42	■□□□□ 0.54
TCF4-262	ENST00000628078	SRP68	Q9UHB9	627 aa	Known RBP	18.42	■□□□□ 0.54
TCF4-262	ENST00000628078	CIC	Q96RK0	1608 aa	Predicted RBP	18.41	■□□□□ 0.54
TCF4-262	ENST00000628078	RC3H1	Q5TC82	1133 aa	Known RBP	18.41	■□□□□ 0.54
TCF4-262	ENST00000628078	LGR6	Q9HBX8	967 aa		18.41	■□□□□ 0.54
TCF4-262	ENST00000628078	COL5A3	P25940	1745 aa	Predicted RBP	18.4	■□□□□ 0.54
TCF4-262	ENST00000628078	DPEP1	P16444	411 aa		18.4	■□□□□ 0.54
TCF4-262	ENST00000628078	CRKL	P46109	303 aa	Known RBP	18.4	■□□□□ 0.54
TCF4-262	ENST00000628078	PARP3	Q9Y6F1	533 aa		18.4	■□□□□ 0.54
TCF4-262	ENST00000628078	ARHGAP27	Q6ZUM4	889 aa		18.39	■□□□□ 0.53
TCF4-262	ENST00000628078	CNTNAP4	Q9C0A0	1308 aa		18.39	■□□□□ 0.53
TCF4-262	ENST00000628078	PXDNL	A1KZ92	1463 aa		18.39	■□□□□ 0.53
TCF4-262	ENST00000628078	SLC39A6	Q13433	755 aa		18.38	■□□□□ 0.53
TCF4-262	ENST00000628078	CC2D1B	Q5T0F9	858 aa	Known RBP	18.38	■□□□□ 0.53
TCF4-262	ENST00000628078	FCHSD2	O94868	740 aa		18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	TGFB2	P61812	414 aa		18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	FKBP8	Q14318	412 aa		18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	AMER1	Q5JTC6	1135 aa	Predicted RBP	18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	CCDC87	Q9NVE4	849 aa		18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	KIF7	Q2M1P5	1343 aa		18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	ADCY9	O60503	1353 aa		18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	KIAA1551	Q9HCM1	1747 aa		18.37	■□□□□ 0.53
TCF4-262	ENST00000628078	C4A	P0C0L4	1744 aa		18.36	■□□□□ 0.53
TCF4-262	ENST00000628078	ADRA2B	P18089	450 aa		18.36	■□□□□ 0.53
TCF4-262	ENST00000628078	DNAJC10	Q8IXB1	793 aa		18.36	■□□□□ 0.53
TCF4-262	ENST00000628078	KIF13B	Q9NQT8	1826 aa		18.35	■□□□□ 0.53
TCF4-262	ENST00000628078	ZNF831	Q5JPB2	1677 aa		18.35	■□□□□ 0.53
TCF4-262	ENST00000628078	INTS5	Q6P9B9	1019 aa	Known RBP	18.35	■□□□□ 0.53
TCF4-262	ENST00000628078	SCN11A	Q9UI33	1791 aa		18.35	■□□□□ 0.53
TCF4-262	ENST00000628078	AKAP4	Q5JQC9	854 aa		18.34	■□□□□ 0.53
TCF4-262	ENST00000628078	TJP1	Q07157	1748 aa		18.34	■□□□□ 0.53
TCF4-262	ENST00000628078	C10orf71	Q711Q0	1435 aa		18.33	■□□□□ 0.53
TCF4-262	ENST00000628078	PLEKHG2	Q9H7P9	1386 aa		18.33	■□□□□ 0.53
TCF4-262	ENST00000628078	RNMT	O43148	476 aa	Known RBP	18.33	■□□□□ 0.52
TCF4-262	ENST00000628078	KCNA3	P22001	575 aa		18.33	■□□□□ 0.52
TCF4-262	ENST00000628078	DDR1	Q08345	913 aa		18.33	■□□□□ 0.52
TCF4-262	ENST00000628078	MTHFSD	Q2M296	383 aa	Known RBP	18.33	■□□□□ 0.52
TCF4-262	ENST00000628078	SLC52A2	Q9HAB3	445 aa		18.33	■□□□□ 0.52
TCF4-262	ENST00000628078	KIF3C	O14782	793 aa		18.32	■□□□□ 0.52
TCF4-262	ENST00000628078	CHRNA5	P30532	468 aa		18.32	■□□□□ 0.52
TCF4-262	ENST00000628078	USPL1	Q5W0Q7	1092 aa		18.32	■□□□□ 0.52
TCF4-262	ENST00000628078	USP42	Q9H9J4	1324 aa	Known RBP	18.31	■□□□□ 0.52
TCF4-262	ENST00000628078	VIRMA	Q69YN4	1812 aa	Known RBP	18.31	■□□□□ 0.52
TCF4-262	ENST00000628078	PER1	O15534	1290 aa	Predicted RBP	18.3	■□□□□ 0.52
TCF4-262	ENST00000628078	DIAPH1	O60610	1272 aa	Known RBP	18.3	■□□□□ 0.52
TCF4-262	ENST00000628078	ZPR1	O75312	459 aa		18.29	■□□□□ 0.52
TCF4-262	ENST00000628078	HSPA6	P17066	643 aa		18.29	■□□□□ 0.52
TCF4-262	ENST00000628078	PIM2	Q9P1W9	311 aa		18.29	■□□□□ 0.52
TCF4-262	ENST00000628078	U2SURP	O15042	1029 aa	Known RBP	18.28	■□□□□ 0.52
TCF4-262	ENST00000628078	CYP19A1	P11511	503 aa	Predicted RBP	18.28	■□□□□ 0.52
TCF4-262	ENST00000628078	NMRK2	Q9NPI5	230 aa		18.28	■□□□□ 0.52
TCF4-262	ENST00000628078	BRCA1	P38398	1863 aa	Known RBP	18.27	■□□□□ 0.52
TCF4-262	ENST00000628078	POLRMT	O00411	1230 aa	Known RBP	18.27	■□□□□ 0.52
TCF4-262	ENST00000628078	CANX	P27824	592 aa	Known RBP	18.27	■□□□□ 0.52
TCF4-262	ENST00000628078	TM4SF1	P30408	202 aa		18.27	■□□□□ 0.52
TCF4-262	ENST00000628078	C9orf131	Q5VYM1	1079 aa		18.27	■□□□□ 0.52
TCF4-262	ENST00000628078	ZBTB1	Q9Y2K1	713 aa		18.27	■□□□□ 0.52
TCF4-262	ENST00000628078	DALRD3	Q5D0E6	543 aa	Known RBP	18.26	■□□□□ 0.51
TCF4-262	ENST00000628078	SOS1	Q07889	1333 aa	Predicted RBP	18.25	■□□□□ 0.51
TCF4-262	ENST00000628078	BICDL1	Q6ZP65	573 aa		18.25	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms