RNA–Protein interactions for RNA: ENST00000626631.1

TCF4-256, Transcript of transcription factor 4, human

TSL 2

Gene TCF4, Length 622 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-256	ENST00000626631	KIF24	Q5T7B8	1368 aa		11.02	□□□□□ -0.65
TCF4-256	ENST00000626631	GRIN3B	O60391	1043 aa		11.01	□□□□□ -0.65
TCF4-256	ENST00000626631	CARD14	Q9BXL6	1004 aa		11.01	□□□□□ -0.65
TCF4-256	ENST00000626631	HMGB2	P26583	209 aa	Known RBP	11	□□□□□ -0.65
TCF4-256	ENST00000626631	NKX1-1	Q15270	411 aa	Predicted RBP	11	□□□□□ -0.65
TCF4-256	ENST00000626631	PELP1	Q8IZL8	1130 aa	Known RBP	11	□□□□□ -0.65
TCF4-256	ENST00000626631	FLAD1	Q8NFF5	587 aa		11	□□□□□ -0.65
TCF4-256	ENST00000626631	CD2AP	Q9Y5K6	639 aa		11	□□□□□ -0.65
TCF4-256	ENST00000626631	PCDH11X	Q9BZA7	1347 aa		11	□□□□□ -0.65
TCF4-256	ENST00000626631	PCDH11Y	Q9BZA8	1340 aa		11	□□□□□ -0.65
TCF4-256	ENST00000626631	FLT4	P35916	1363 aa		11	□□□□□ -0.65
TCF4-256	ENST00000626631	SMG6	Q86US8	1419 aa	Known RBP	11	□□□□□ -0.65
TCF4-256	ENST00000626631	SENP3-EIF4A1	A0A087X0R7	540 aa		10.99	□□□□□ -0.65
TCF4-256	ENST00000626631	MSL1	Q68DK7	614 aa		10.99	□□□□□ -0.65
TCF4-256	ENST00000626631	MPRIP	Q6WCQ1	1025 aa		10.99	□□□□□ -0.65
TCF4-256	ENST00000626631	AMIGO3	Q86WK7	504 aa		10.99	□□□□□ -0.65
TCF4-256	ENST00000626631	GIGYF1	O75420	1035 aa	Predicted RBP	10.98	□□□□□ -0.65
TCF4-256	ENST00000626631	CDCA8	Q53HL2	280 aa		10.98	□□□□□ -0.65
TCF4-256	ENST00000626631	PIGB	Q92521	554 aa		10.98	□□□□□ -0.65
TCF4-256	ENST00000626631	EMILIN1	Q9Y6C2	1016 aa		10.98	□□□□□ -0.65
TCF4-256	ENST00000626631	PALLD	Q8WX93	1383 aa		10.98	□□□□□ -0.65
TCF4-256	ENST00000626631	NCAPD2	Q15021	1401 aa		10.98	□□□□□ -0.65
TCF4-256	ENST00000626631	SMARCC1	Q92922	1105 aa	Predicted RBP	10.97	□□□□□ -0.65
TCF4-256	ENST00000626631	C5	P01031	1676 aa		10.96	□□□□□ -0.65
TCF4-256	ENST00000626631	WASHC2A	Q641Q2	1341 aa		10.96	□□□□□ -0.65
TCF4-256	ENST00000626631	SMIM5	Q71RC9	77 aa		10.96	□□□□□ -0.65
TCF4-256	ENST00000626631	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.96	□□□□□ -0.65
TCF4-256	ENST00000626631	TAF1L	Q8IZX4	1826 aa		10.95	□□□□□ -0.66
TCF4-256	ENST00000626631	PHF12	Q96QT6	1004 aa		10.95	□□□□□ -0.66
TCF4-256	ENST00000626631	EYA1	Q99502	592 aa		10.95	□□□□□ -0.66
TCF4-256	ENST00000626631	ITGB4	P16144	1822 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	LOC102724428	A0A0B4J2F2	783 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	SIK1	P57059	783 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	LINC00116	Q8NCU8	138 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	AK7	Q96M32	723 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	CREBZF	Q9NS37	354 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	POLK	Q9UBT6	870 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	SPG7	Q9UQ90	795 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	C4B	P0C0L5	1744 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	TOGARAM1	Q9Y4F4	1720 aa		10.94	□□□□□ -0.66
TCF4-256	ENST00000626631	NSD3	Q9BZ95	1437 aa		10.93	□□□□□ -0.66
TCF4-256	ENST00000626631	KIF20B	Q96Q89	1820 aa		10.93	□□□□□ -0.66
TCF4-256	ENST00000626631	PKD1L3	Q7Z443	1732 aa		10.93	□□□□□ -0.66
TCF4-256	ENST00000626631	SSFA2	P28290	1259 aa		10.93	□□□□□ -0.66
TCF4-256	ENST00000626631	ASAP1	Q9ULH1	1129 aa		10.93	□□□□□ -0.66
TCF4-256	ENST00000626631	MAP2	P11137	1827 aa	Known RBP	10.93	□□□□□ -0.66
TCF4-256	ENST00000626631	ATP10D	Q9P241	1426 aa		10.92	□□□□□ -0.66
TCF4-256	ENST00000626631	UBR3	Q6ZT12	1888 aa		10.92	□□□□□ -0.66
TCF4-256	ENST00000626631	PPM1G	O15355	546 aa	Predicted RBP	10.92	□□□□□ -0.66
TCF4-256	ENST00000626631	PHKG2	P15735	406 aa		10.92	□□□□□ -0.66
TCF4-256	ENST00000626631	ITPK1	Q13572	414 aa		10.92	□□□□□ -0.66
TCF4-256	ENST00000626631	METRN	Q9UJH8	293 aa		10.92	□□□□□ -0.66
TCF4-256	ENST00000626631	ADCY9	O60503	1353 aa		10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	PHF14	O94880	888 aa		10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	MAMSTR	Q6ZN01	415 aa		10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	IFNL2	Q8IZJ0	200 aa		10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	FAM163A	Q96GL9	167 aa	Predicted RBP	10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	ATG3	Q9NT62	314 aa		10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	TMOD3	Q9NYL9	352 aa		10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	TIMELESS	Q9UNS1	1208 aa		10.91	□□□□□ -0.66
TCF4-256	ENST00000626631	IGSF1	Q8N6C5	1336 aa		10.9	□□□□□ -0.66
TCF4-256	ENST00000626631	ANKRD26	Q9UPS8	1709 aa		10.9	□□□□□ -0.66
TCF4-256	ENST00000626631	EIF4A2	Q14240	407 aa	Known RBP	10.9	□□□□□ -0.66
TCF4-256	ENST00000626631	GNPAT	O15228	680 aa		10.89	□□□□□ -0.67
TCF4-256	ENST00000626631	ATP6V1A	P38606	617 aa		10.89	□□□□□ -0.67
TCF4-256	ENST00000626631	TRIM26	Q12899	539 aa	Predicted RBP	10.89	□□□□□ -0.67
TCF4-256	ENST00000626631	SLC4A9	Q96Q91	983 aa		10.89	□□□□□ -0.67
TCF4-256	ENST00000626631	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.89	□□□□□ -0.67
TCF4-256	ENST00000626631	PLEKHG2	Q9H7P9	1386 aa		10.89	□□□□□ -0.67
TCF4-256	ENST00000626631	ERVV-2	B6SEH9	535 aa		10.88	□□□□□ -0.67
TCF4-256	ENST00000626631	LCE2D	Q5TA82	110 aa	Predicted RBP	10.87	□□□□□ -0.67
TCF4-256	ENST00000626631	RC3H1	Q5TC82	1133 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-256	ENST00000626631	KDR	P35968	1356 aa		10.87	□□□□□ -0.67
TCF4-256	ENST00000626631	MMP10	P09238	476 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	TNNT2	P45379	298 aa	Predicted RBP	10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	TGFB2	P61812	414 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	TRAPPC3L	Q5T215	181 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	IFFO2	Q5TF58	517 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	NLGN1	Q8N2Q7	840 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	SLC39A7	Q92504	469 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	ARHGEF1	Q92888	912 aa	Known RBP	10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	DCAF5	Q96JK2	942 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	WWC3	Q9ULE0	1092 aa		10.86	□□□□□ -0.67
TCF4-256	ENST00000626631	KIF3C	O14782	793 aa		10.85	□□□□□ -0.67
TCF4-256	ENST00000626631	POTEJ	P0CG39	1038 aa		10.85	□□□□□ -0.67
TCF4-256	ENST00000626631	HSPA6	P17066	643 aa		10.85	□□□□□ -0.67
TCF4-256	ENST00000626631	ZNF526	Q8TF50	670 aa	Predicted RBP	10.85	□□□□□ -0.67
TCF4-256	ENST00000626631	RTCB	Q9Y3I0	505 aa	Known RBP	10.85	□□□□□ -0.67
TCF4-256	ENST00000626631	RPS6KA4	O75676	772 aa		10.84	□□□□□ -0.67
TCF4-256	ENST00000626631	HSP90AB1	P08238	724 aa	Known RBP	10.84	□□□□□ -0.67
TCF4-256	ENST00000626631	C7	P10643	843 aa		10.84	□□□□□ -0.67
TCF4-256	ENST00000626631	GYS1	P13807	737 aa		10.84	□□□□□ -0.67
TCF4-256	ENST00000626631	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.84	□□□□□ -0.67
TCF4-256	ENST00000626631	PXDNL	A1KZ92	1463 aa		10.84	□□□□□ -0.67
TCF4-256	ENST00000626631	ZNF831	Q5JPB2	1677 aa		10.84	□□□□□ -0.67
TCF4-256	ENST00000626631	CNTNAP4	Q9C0A0	1308 aa		10.84	□□□□□ -0.67
TCF4-256	ENST00000626631		A0A0G2JLW4	131 aa		10.83	□□□□□ -0.68
TCF4-256	ENST00000626631	AMOT	Q4VCS5	1084 aa		10.83	□□□□□ -0.68
TCF4-256	ENST00000626631	PANK3	Q9H999	370 aa		10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms