RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 HMOX1P09601 288 aa16.94■□□□□ 0.3
PNKP-217ENST00000625216 ATP6V1AP38606 617 aa16.94■□□□□ 0.3
PNKP-217ENST00000625216 CNGB1Q14028 1251 aaPredicted RBP16.94■□□□□ 0.3
PNKP-217ENST00000625216 CFAP53Q96M91 514 aa16.93■□□□□ 0.3
PNKP-217ENST00000625216 QSER1Q2KHR3 1735 aa16.93■□□□□ 0.3
PNKP-217ENST00000625216 ITGB4P16144 1822 aa16.92■□□□□ 0.3
PNKP-217ENST00000625216 SSFA2P28290 1259 aa16.92■□□□□ 0.3
PNKP-217ENST00000625216 NFATC2IPQ8NCF5 419 aa16.92■□□□□ 0.3
PNKP-217ENST00000625216 LINC00116Q8NCU8 138 aa16.92■□□□□ 0.3
PNKP-217ENST00000625216 KDM6AO15550 1401 aaPredicted RBP16.92■□□□□ 0.3
PNKP-217ENST00000625216 ITPK1Q13572 414 aa16.91■□□□□ 0.3
PNKP-217ENST00000625216 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.9■□□□□ 0.3
PNKP-217ENST00000625216 CCER2I3L3R5 266 aa16.9■□□□□ 0.3
PNKP-217ENST00000625216 U2SURPO15042 1029 aaKnown RBP16.9■□□□□ 0.3
PNKP-217ENST00000625216 MTHFSDQ2M296 383 aaKnown RBP16.9■□□□□ 0.3
PNKP-217ENST00000625216 RC3H1Q5TC82 1133 aaKnown RBP16.9■□□□□ 0.3
PNKP-217ENST00000625216 RBM42Q9BTD8 480 aaKnown RBP16.9■□□□□ 0.3
PNKP-217ENST00000625216 NUDCQ9Y266 331 aa16.9■□□□□ 0.3
PNKP-217ENST00000625216 SLC52A2Q9HAB3 445 aa16.89■□□□□ 0.29
PNKP-217ENST00000625216 GNPATO15228 680 aa16.88■□□□□ 0.29
PNKP-217ENST00000625216 RNMTO43148 476 aaKnown RBP16.88■□□□□ 0.29
PNKP-217ENST00000625216 PPP2R1AP30153 589 aa16.88■□□□□ 0.29
PNKP-217ENST00000625216 SLC4A9Q96Q91 983 aa16.88■□□□□ 0.29
PNKP-217ENST00000625216 C5P01031 1676 aa16.88■□□□□ 0.29
PNKP-217ENST00000625216 COL3A1P02461 1466 aaPredicted RBP16.87■□□□□ 0.29
PNKP-217ENST00000625216 PHF14O94880 888 aa16.87■□□□□ 0.29
PNKP-217ENST00000625216 RALBP1Q15311 655 aa16.87■□□□□ 0.29
PNKP-217ENST00000625216 GAS2L2Q8NHY3 880 aa16.87■□□□□ 0.29
PNKP-217ENST00000625216 LGR6Q9HBX8 967 aa16.87■□□□□ 0.29
PNKP-217ENST00000625216 RTCBQ9Y3I0 505 aaKnown RBP16.87■□□□□ 0.29
PNKP-217ENST00000625216 C4BP0C0L5 1744 aa16.87■□□□□ 0.29
PNKP-217ENST00000625216 PTCD1O75127 700 aaKnown RBP16.86■□□□□ 0.29
PNKP-217ENST00000625216 ADRA2BP18089 450 aa16.86■□□□□ 0.29
PNKP-217ENST00000625216 CCDC184Q52MB2 194 aa16.86■□□□□ 0.29
PNKP-217ENST00000625216 MSL1Q68DK7 614 aa16.86■□□□□ 0.29
PNKP-217ENST00000625216 AMIGO3Q86WK7 504 aa16.86■□□□□ 0.29
PNKP-217ENST00000625216 MYBBP1AQ9BQG0 1328 aaKnown RBP16.86■□□□□ 0.29
PNKP-217ENST00000625216 TRAPPC3LQ5T215 181 aa16.85■□□□□ 0.29
PNKP-217ENST00000625216 CNTNAP4Q9C0A0 1308 aa16.85■□□□□ 0.29
PNKP-217ENST00000625216 TAF1LQ8IZX4 1826 aa16.84■□□□□ 0.29
PNKP-217ENST00000625216 RPS6KA4O75676 772 aa16.84■□□□□ 0.29
PNKP-217ENST00000625216 KLHL34Q8N239 644 aa16.84■□□□□ 0.29
PNKP-217ENST00000625216 CD2APQ9Y5K6 639 aa16.84■□□□□ 0.29
PNKP-217ENST00000625216 COL24A1Q17RW2 1714 aa16.84■□□□□ 0.29
PNKP-217ENST00000625216 TUBGCP6Q96RT7 1819 aa16.84■□□□□ 0.29
PNKP-217ENST00000625216 GNAT3A8MTJ3 354 aa16.83■□□□□ 0.28
PNKP-217ENST00000625216 YY1P25490 414 aa16.83■□□□□ 0.28
PNKP-217ENST00000625216 FCHSD2O94868 740 aa16.82■□□□□ 0.28
PNKP-217ENST00000625216 U2AF1L5P0DN76 240 aaPredicted RBP16.82■□□□□ 0.28
PNKP-217ENST00000625216 U2AF1Q01081 240 aaKnown RBP eCLIP16.82■□□□□ 0.289e-9■■■■■ 30
PNKP-217ENST00000625216 SMIM5Q71RC9 77 aa16.82■□□□□ 0.28
PNKP-217ENST00000625216 RSPH6AQ9H0K4 717 aa16.82■□□□□ 0.28
PNKP-217ENST00000625216 ZNF831Q5JPB2 1677 aa16.81■□□□□ 0.28
PNKP-217ENST00000625216 PRKAR2BP31323 418 aa16.81■□□□□ 0.28
PNKP-217ENST00000625216 NLGN1Q8N2Q7 840 aa16.81■□□□□ 0.28
PNKP-217ENST00000625216 ARHGEF1Q92888 912 aaKnown RBP16.81■□□□□ 0.28
PNKP-217ENST00000625216 RFC4P35249 363 aa16.8■□□□□ 0.28
PNKP-217ENST00000625216 CRKLP46109 303 aaKnown RBP16.8■□□□□ 0.28
PNKP-217ENST00000625216 GPR162Q16538 588 aa16.8■□□□□ 0.28
PNKP-217ENST00000625216 VSIG10Q8N0Z9 540 aa16.8■□□□□ 0.28
PNKP-217ENST00000625216 IL17REQ8NFR9 667 aa16.8■□□□□ 0.28
PNKP-217ENST00000625216 MRC1P22897 1456 aa16.8■□□□□ 0.28
PNKP-217ENST00000625216 TEFQ10587 303 aa16.79■□□□□ 0.28
PNKP-217ENST00000625216 NLGN2Q8NFZ4 835 aa16.79■□□□□ 0.28
PNKP-217ENST00000625216 PHACTR3Q96KR7 559 aa16.79■□□□□ 0.28
PNKP-217ENST00000625216 MRS2Q9HD23 443 aa16.79■□□□□ 0.28
PNKP-217ENST00000625216 SLC39A6Q13433 755 aa16.78■□□□□ 0.28
PNKP-217ENST00000625216 UBR3Q6ZT12 1888 aa16.78■□□□□ 0.28
PNKP-217ENST00000625216 SCN11AQ9UI33 1791 aa16.77■□□□□ 0.28
PNKP-217ENST00000625216 INTS5Q6P9B9 1019 aaKnown RBP16.77■□□□□ 0.28
PNKP-217ENST00000625216 DNAJC10Q8IXB1 793 aa16.77■□□□□ 0.28
PNKP-217ENST00000625216 TTC5Q8N0Z6 440 aa16.77■□□□□ 0.28
PNKP-217ENST00000625216 GRIN3BO60391 1043 aa16.76■□□□□ 0.27
PNKP-217ENST00000625216 MMP10P09238 476 aa16.76■□□□□ 0.27
PNKP-217ENST00000625216 CYP19A1P11511 503 aaPredicted RBP16.76■□□□□ 0.27
PNKP-217ENST00000625216 CCDC87Q9NVE4 849 aa16.76■□□□□ 0.27
PNKP-217ENST00000625216 UTRNP46939 3433 aa16.75■□□□□ 0.27
PNKP-217ENST00000625216 HTATSF1O43719 755 aaKnown RBP16.75■□□□□ 0.27
PNKP-217ENST00000625216 NEFMP07197 916 aa16.75■□□□□ 0.27
PNKP-217ENST00000625216 GYS1P13807 737 aa16.75■□□□□ 0.27
PNKP-217ENST00000625216 RTF1Q92541 710 aaKnown RBP16.75■□□□□ 0.27
PNKP-217ENST00000625216 TEX13AQ9BXU3 409 aaPredicted RBP16.75■□□□□ 0.27
PNKP-217ENST00000625216 CEMIPQ8WUJ3 1361 aa16.75■□□□□ 0.27
PNKP-217ENST00000625216 ADAMTS7Q9UKP4 1686 aa16.75■□□□□ 0.27
PNKP-217ENST00000625216 STARD3NLO95772 234 aa16.74■□□□□ 0.27
PNKP-217ENST00000625216 ZNF790Q6PG37 636 aa16.74■□□□□ 0.27
PNKP-217ENST00000625216 PELP1Q8IZL8 1130 aaKnown RBP16.74■□□□□ 0.27
PNKP-217ENST00000625216 PNNQ9H307 717 aaKnown RBP16.74■□□□□ 0.27
PNKP-217ENST00000625216 YTHDC1Q96MU7 727 aaKnown RBP16.72■□□□□ 0.27
PNKP-217ENST00000625216 PARP3Q9Y6F1 533 aa16.72■□□□□ 0.27
PNKP-217ENST00000625216 USP42Q9H9J4 1324 aaKnown RBP16.71■□□□□ 0.27
PNKP-217ENST00000625216 CICQ96RK0 1608 aaPredicted RBP16.71■□□□□ 0.27
PNKP-217ENST00000625216 COL5A3P25940 1745 aaPredicted RBP16.71■□□□□ 0.27
PNKP-217ENST00000625216 BTBD11A6QL63 1104 aa16.71■□□□□ 0.27
PNKP-217ENST00000625216 ZPR1O75312 459 aa16.71■□□□□ 0.27
PNKP-217ENST00000625216 TGFB2P61812 414 aa16.71■□□□□ 0.27
PNKP-217ENST00000625216 ZNF496Q96IT1 587 aaPredicted RBP16.71■□□□□ 0.27
PNKP-217ENST00000625216 FMNL2Q96PY5 1086 aa16.71■□□□□ 0.27
PNKP-217ENST00000625216 SOS1Q07889 1333 aaPredicted RBP16.7■□□□□ 0.26
PNKP-217ENST00000625216 KCPQ6ZWJ8 1503 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms