RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 ELL2O00472 640 aaPredicted RBP22.14■■□□□ 1.14
PCF11-207ENST00000624931 C8orf58Q8NAV2 365 aa22.14■■□□□ 1.14
PCF11-207ENST00000624931 CEMIPQ8WUJ3 1361 aa22.14■■□□□ 1.13
PCF11-207ENST00000624931 C1orf141Q5JVX7 400 aa22.14■■□□□ 1.13
PCF11-207ENST00000624931 TBC1D32Q96NH3 1257 aa22.14■■□□□ 1.13
PCF11-207ENST00000624931 CARD10Q9BWT7 1032 aa22.14■■□□□ 1.13
PCF11-207ENST00000624931 RTN4Q9NQC3 1192 aaKnown RBP22.14■■□□□ 1.13
PCF11-207ENST00000624931 JCADQ9P266 1359 aa22.12■■□□□ 1.13
PCF11-207ENST00000624931 TSPYL4Q9UJ04 414 aa22.12■■□□□ 1.13
PCF11-207ENST00000624931 ANO8Q9HCE9 1232 aaPredicted RBP22.11■■□□□ 1.13
PCF11-207ENST00000624931 ADAMTS7Q9UKP4 1686 aa22.11■■□□□ 1.13
PCF11-207ENST00000624931 SHANK3Q9BYB0 1731 aa22.11■■□□□ 1.13
PCF11-207ENST00000624931 RNMTO43148 476 aaKnown RBP22.11■■□□□ 1.13
PCF11-207ENST00000624931 SSH1Q8WYL5 1049 aa22.11■■□□□ 1.13
PCF11-207ENST00000624931 TNNQ9UQP3 1299 aa22.11■■□□□ 1.13
PCF11-207ENST00000624931 KDM6AO15550 1401 aaPredicted RBP22.1■■□□□ 1.13
PCF11-207ENST00000624931 HSPA1LP34931 641 aa22.1■■□□□ 1.13
PCF11-207ENST00000624931 SPG7Q9UQ90 795 aa22.1■■□□□ 1.13
PCF11-207ENST00000624931 CYP27B1O15528 508 aa22.09■■□□□ 1.13
PCF11-207ENST00000624931 VAMP4O75379 141 aa22.09■■□□□ 1.13
PCF11-207ENST00000624931 PHKG2P15735 406 aa22.09■■□□□ 1.13
PCF11-207ENST00000624931 SMC4Q9NTJ3 1288 aa22.09■■□□□ 1.13
PCF11-207ENST00000624931 PDZRN3Q9UPQ7 1066 aa22.09■■□□□ 1.13
PCF11-207ENST00000624931 LRP6O75581 1613 aa22.09■■□□□ 1.13
PCF11-207ENST00000624931 TWISTNBQ3B726 338 aaPredicted RBP22.09■■□□□ 1.13
PCF11-207ENST00000624931 SCN11AQ9UI33 1791 aa22.08■■□□□ 1.13
PCF11-207ENST00000624931 IL2RBP14784 551 aa22.08■■□□□ 1.12
PCF11-207ENST00000624931 ZKSCAN2Q63HK3 967 aa22.08■■□□□ 1.12
PCF11-207ENST00000624931 ANTXR1Q9H6X2 564 aa22.08■■□□□ 1.12
PCF11-207ENST00000624931 SIPA1L3O60292 1781 aaPredicted RBP22.08■■□□□ 1.12
PCF11-207ENST00000624931 KDM3BQ7LBC6 1761 aa22.08■■□□□ 1.12
PCF11-207ENST00000624931 SEC24BO95487 1268 aa22.07■■□□□ 1.12
PCF11-207ENST00000624931 MVPQ14764 893 aaKnown RBP22.07■■□□□ 1.12
PCF11-207ENST00000624931 TAF7Q15545 349 aaPredicted RBP22.07■■□□□ 1.12
PCF11-207ENST00000624931 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.07■■□□□ 1.12
PCF11-207ENST00000624931 PCDHB15Q9Y5E8 787 aa22.07■■□□□ 1.12
PCF11-207ENST00000624931 WNK3Q9BYP7 1800 aa22.06■■□□□ 1.12
PCF11-207ENST00000624931 NWD2Q9ULI1 1742 aa22.05■■□□□ 1.12
PCF11-207ENST00000624931 SLIT2O94813 1529 aa22.05■■□□□ 1.12
PCF11-207ENST00000624931 PLEKHG2Q9H7P9 1386 aa22.05■■□□□ 1.12
PCF11-207ENST00000624931 KCNQ3O43525 872 aa22.04■■□□□ 1.12
PCF11-207ENST00000624931 TEFQ10587 303 aa22.04■■□□□ 1.12
PCF11-207ENST00000624931 IFNL2Q8IZJ0 200 aa22.04■■□□□ 1.12
PCF11-207ENST00000624931 ZCRB1Q8TBF4 217 aaKnown RBP22.04■■□□□ 1.12
PCF11-207ENST00000624931 DISP2A7MBM2 1401 aa22.04■■□□□ 1.12
PCF11-207ENST00000624931 HDAC1Q13547 482 aaPredicted RBP22.03■■□□□ 1.12
PCF11-207ENST00000624931 DZIP1LQ8IYY4 767 aaKnown RBP22.03■■□□□ 1.12
PCF11-207ENST00000624931 RLBP1P12271 317 aa22.02■■□□□ 1.12
PCF11-207ENST00000624931 C8orf37Q96NL8 207 aa22.02■■□□□ 1.12
PCF11-207ENST00000624931 PCDH11XQ9BZA7 1347 aa22.01■■□□□ 1.11
PCF11-207ENST00000624931 PCDH11YQ9BZA8 1340 aa22.01■■□□□ 1.11
PCF11-207ENST00000624931 ALDH1L2Q3SY69 923 aa22■■□□□ 1.11
PCF11-207ENST00000624931 FTSJ3Q8IY81 847 aaKnown RBP22■■□□□ 1.11
PCF11-207ENST00000624931 MRPL50Q8N5N7 158 aaKnown RBP22■■□□□ 1.11
PCF11-207ENST00000624931 TBC1D2Q9BYX2 928 aa22■■□□□ 1.11
PCF11-207ENST00000624931 MRC1P22897 1456 aa22■■□□□ 1.11
PCF11-207ENST00000624931 BTBD11A6QL63 1104 aa22■■□□□ 1.11
PCF11-207ENST00000624931 DDX54Q8TDD1 881 aaKnown RBP22■■□□□ 1.11
PCF11-207ENST00000624931 NOB1Q9ULX3 412 aaKnown RBP22■■□□□ 1.11
PCF11-207ENST00000624931 DDX19BQ9UMR2 479 aa22■■□□□ 1.11
PCF11-207ENST00000624931 SPATA31A1Q5TZJ5 1347 aa21.98■■□□□ 1.11
PCF11-207ENST00000624931 SPATA31A6Q5VVP1 1343 aa21.98■■□□□ 1.11
PCF11-207ENST00000624931 TOGARAM1Q9Y4F4 1720 aa21.98■■□□□ 1.11
PCF11-207ENST00000624931 BABAM1Q9NWV8 329 aa21.98■■□□□ 1.11
PCF11-207ENST00000624931 CHMP5Q9NZZ3 219 aa21.98■■□□□ 1.11
PCF11-207ENST00000624931 NGLY1Q96IV0 654 aa21.97■■□□□ 1.11
PCF11-207ENST00000624931 DCAF5Q96JK2 942 aa21.97■■□□□ 1.11
PCF11-207ENST00000624931 SLKQ9H2G2 1235 aaPredicted RBP21.97■■□□□ 1.11
PCF11-207ENST00000624931 SLC52A2Q9HAB3 445 aa21.97■■□□□ 1.11
PCF11-207ENST00000624931 ZNF428Q96B54 188 aa21.97■■□□□ 1.11
PCF11-207ENST00000624931 TRIM27P14373 513 aa21.96■■□□□ 1.11
PCF11-207ENST00000624931 EIF4A1P60842 406 aaKnown RBP21.96■■□□□ 1.11
PCF11-207ENST00000624931 NECTIN2Q92692 538 aa21.96■■□□□ 1.11
PCF11-207ENST00000624931 CCDC9Q9Y3X0 531 aaKnown RBP21.96■■□□□ 1.11
PCF11-207ENST00000624931 BCL9LQ86UU0 1499 aa21.96■■□□□ 1.11
PCF11-207ENST00000624931 SPATA31A5Q5VU36 1347 aa21.96■■□□□ 1.11
PCF11-207ENST00000624931 SPATA31A7Q8IWB4 1347 aa21.96■■□□□ 1.11
PCF11-207ENST00000624931 KIF16BQ96L93 1317 aa21.96■■□□□ 1.11
PCF11-207ENST00000624931 SLC39A6Q13433 755 aa21.95■■□□□ 1.1
PCF11-207ENST00000624931 NFATC2IPQ8NCF5 419 aa21.95■■□□□ 1.1
PCF11-207ENST00000624931 C22orf23Q9BZE7 217 aa21.94■■□□□ 1.1
PCF11-207ENST00000624931 ISY1Q9ULR0 285 aaKnown RBP21.94■■□□□ 1.1
PCF11-207ENST00000624931 IPO8O15397 1037 aaKnown RBP21.94■■□□□ 1.1
PCF11-207ENST00000624931 HSP90AB1P08238 724 aaKnown RBP21.94■■□□□ 1.1
PCF11-207ENST00000624931 UNC5CLQ8IV45 518 aa21.94■■□□□ 1.1
PCF11-207ENST00000624931 CHMP4BQ9H444 224 aaKnown RBP21.94■■□□□ 1.1
PCF11-207ENST00000624931 MCM4P33991 863 aa21.93■■□□□ 1.1
PCF11-207ENST00000624931 ATF7IPQ6VMQ6 1270 aa21.93■■□□□ 1.1
PCF11-207ENST00000624931 SMC5Q8IY18 1101 aa21.92■■□□□ 1.1
PCF11-207ENST00000624931 TNS2Q63HR2 1409 aa21.92■■□□□ 1.1
PCF11-207ENST00000624931 BRPF1P55201 1214 aaPredicted RBP21.92■■□□□ 1.1
PCF11-207ENST00000624931 C5P01031 1676 aa21.91■■□□□ 1.1
PCF11-207ENST00000624931 GOLGA6L3A6NEY3 463 aa21.91■■□□□ 1.1
PCF11-207ENST00000624931 CABP4P57796 275 aa21.91■■□□□ 1.1
PCF11-207ENST00000624931 NKX1-1Q15270 411 aaPredicted RBP21.91■■□□□ 1.1
PCF11-207ENST00000624931 MEX3CQ5U5Q3 659 aaKnown RBP21.91■■□□□ 1.1
PCF11-207ENST00000624931 PRAMEF22A3QJZ6 481 aa21.9■■□□□ 1.1
PCF11-207ENST00000624931 DDX11L8A8MPP1 907 aa21.89■■□□□ 1.1
PCF11-207ENST00000624931 EIF5BO60841 1220 aaKnown RBP21.89■■□□□ 1.1
PCF11-207ENST00000624931 PTMSP20962 102 aa21.89■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms