RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 RAB11FIP3O75154 756 aa10.4□□□□□ -0.75
VCL-206ENST00000623461 SLC4A2P04920 1241 aa10.4□□□□□ -0.75
VCL-206ENST00000623461 RNF187Q5TA31 235 aaPredicted RBP10.4□□□□□ -0.75
VCL-206ENST00000623461 CCDC91Q7Z6B0 441 aa10.4□□□□□ -0.75
VCL-206ENST00000623461 ANKRD30BQ9BXX2 1392 aa10.4□□□□□ -0.75
VCL-206ENST00000623461 TRIM22Q8IYM9 498 aa10.39□□□□□ -0.75
VCL-206ENST00000623461 JPH4Q96JJ6 628 aa10.39□□□□□ -0.75
VCL-206ENST00000623461 STX6O43752 255 aa10.39□□□□□ -0.75
VCL-206ENST00000623461 ZNF165P49910 485 aa10.39□□□□□ -0.75
VCL-206ENST00000623461 SEPT7Q16181 437 aaKnown RBP10.39□□□□□ -0.75
VCL-206ENST00000623461 ENOX2Q16206 610 aaKnown RBP10.39□□□□□ -0.75
VCL-206ENST00000623461 TAF4BQ92750 862 aa10.39□□□□□ -0.75
VCL-206ENST00000623461 MYRIPQ8NFW9 859 aa10.39□□□□□ -0.75
VCL-206ENST00000623461 CEP131Q9UPN4 1083 aa10.39□□□□□ -0.75
VCL-206ENST00000623461 SYNJ1O43426 1573 aa10.38□□□□□ -0.75
VCL-206ENST00000623461 FCHSD2O94868 740 aa10.38□□□□□ -0.75
VCL-206ENST00000623461 MAP2K1Q02750 393 aaPredicted RBP10.38□□□□□ -0.75
VCL-206ENST00000623461 WASF1Q92558 559 aa10.38□□□□□ -0.75
VCL-206ENST00000623461 HCLS1P14317 486 aaPredicted RBP10.38□□□□□ -0.75
VCL-206ENST00000623461 FAM200AQ8TCP9 573 aa10.38□□□□□ -0.75
VCL-206ENST00000623461 PRIM1P49642 420 aaKnown RBP10.38□□□□□ -0.75
VCL-206ENST00000623461 MLECQ14165 292 aa10.38□□□□□ -0.75
VCL-206ENST00000623461 CWC27Q6UX04 472 aaKnown RBP10.38□□□□□ -0.75
VCL-206ENST00000623461 TMPOP42166 694 aaKnown RBP10.37□□□□□ -0.75
VCL-206ENST00000623461 A0A1B0GUL7 405 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 TMC6Q7Z403 805 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 TICAM2Q86XR7 235 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 CTNNA3Q9UI47 895 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 TBC1D2BQ9UPU7 963 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 DAPK1P53355 1430 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 SPA17Q15506 151 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 FANCD2Q9BXW9 1451 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 NEFHP12036 1026 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 TAX1BP1Q86VP1 789 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 CCAR1Q8IX12 1150 aaKnown RBP10.37□□□□□ -0.75
VCL-206ENST00000623461 CABP2Q9NPB3 220 aa10.37□□□□□ -0.75
VCL-206ENST00000623461 NUCB1Q02818 461 aa10.36□□□□□ -0.75
VCL-206ENST00000623461 CKAP2LQ8IYA6 745 aa10.36□□□□□ -0.75
VCL-206ENST00000623461 CDK5RAP3Q96JB5 506 aa10.36□□□□□ -0.75
VCL-206ENST00000623461 ZNF830Q96NB3 372 aaPredicted RBP10.36□□□□□ -0.75
VCL-206ENST00000623461 PAFAH1B1P43034 410 aa10.36□□□□□ -0.75
VCL-206ENST00000623461 GIGYF2Q6Y7W6 1299 aaKnown RBP10.36□□□□□ -0.75
VCL-206ENST00000623461 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.36□□□□□ -0.756e-10■■□□□ 13
VCL-206ENST00000623461 GLRX3O76003 335 aaKnown RBP10.36□□□□□ -0.75
VCL-206ENST00000623461 TUBBP07437 444 aa10.36□□□□□ -0.75
VCL-206ENST00000623461 ZSCAN22P10073 491 aaPredicted RBP10.36□□□□□ -0.75
VCL-206ENST00000623461 SSH1Q8WYL5 1049 aa10.36□□□□□ -0.75
VCL-206ENST00000623461 SKILP12757 684 aa10.36□□□□□ -0.75
VCL-206ENST00000623461 HMGB1P09429 215 aaKnown RBP10.35□□□□□ -0.75
VCL-206ENST00000623461 GTF2E1P29083 439 aaPredicted RBP10.35□□□□□ -0.75
VCL-206ENST00000623461 EIF5P55010 431 aaKnown RBP10.35□□□□□ -0.75
VCL-206ENST00000623461 SYCP1Q15431 976 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 CCDC186Q7Z3E2 898 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 NAA15Q9BXJ9 866 aaKnown RBP10.35□□□□□ -0.75
VCL-206ENST00000623461 TCEAL9Q9UHQ7 104 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 ATP2B1P20020 1258 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.35□□□□□ -0.75
VCL-206ENST00000623461 RSPH14Q9UHP6 348 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 MAP4K4O95819 1239 aaPredicted RBP10.35□□□□□ -0.75
VCL-206ENST00000623461 KIF1BPQ96EK5 621 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.35□□□□□ -0.754e-7■■□□□ 14.3
VCL-206ENST00000623461 GAPVD1Q14C86 1478 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 FERMT3Q86UX7 667 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 USO1O60763 962 aaKnown RBP10.35□□□□□ -0.75
VCL-206ENST00000623461 GBP2P32456 591 aaPredicted RBP10.35□□□□□ -0.75
VCL-206ENST00000623461 CEP112Q8N8E3 955 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 KDM4AO75164 1064 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 TTC22Q5TAA0 569 aa10.35□□□□□ -0.75
VCL-206ENST00000623461 ANAPC15P60006 121 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 CKAP4Q07065 602 aaKnown RBP10.34□□□□□ -0.75
VCL-206ENST00000623461 NFE2L2Q16236 605 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 ERO1AQ96HE7 468 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 RAI14Q9P0K7 980 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 CTDP1Q9Y5B0 961 aaPredicted RBP10.34□□□□□ -0.75
VCL-206ENST00000623461 CAPN2P17655 700 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 GJB2P29033 226 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 GNG11P61952 73 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 EHBP1Q8NDI1 1231 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 TTC12Q9H892 705 aaPredicted RBP10.34□□□□□ -0.75
VCL-206ENST00000623461 YEATS4O95619 227 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 HSPA4P34932 840 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 ZNF445P59923 1031 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 NBPF11Q86T75 865 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 TMX3Q96JJ7 454 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 CCDC69A6NI79 296 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 GCOM1H8Y6P7 765 aaPredicted RBP10.34□□□□□ -0.75
VCL-206ENST00000623461 CCDC175P0C221 793 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 MYZAPP0CAP1 466 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 EZRP15311 586 aaKnown RBP10.34□□□□□ -0.75
VCL-206ENST00000623461 GOLGA1Q92805 767 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 C9orf84Q5VXU9 1444 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 SPECC1LQ69YQ0 1117 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 GIMAP6Q6P9H5 292 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 USP48Q86UV5 1035 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 CNKSR2Q8WXI2 1034 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 GDPD2Q9HCC8 539 aa10.34□□□□□ -0.75
VCL-206ENST00000623461 SLC3A2P08195 630 aaKnown RBP10.33□□□□□ -0.76
VCL-206ENST00000623461 CCDC158Q5M9N0 1113 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 ZSCAN25Q6NSZ9 544 aa10.33□□□□□ -0.76
VCL-206ENST00000623461 ZSCAN16Q9H4T2 348 aaPredicted RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms