RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 COL16A1Q07092 1604 aaPredicted RBP27.26■■□□□ 1.95
SPAST-204ENST00000621856 SLC4A2P04920 1241 aa27.25■■□□□ 1.95
SPAST-204ENST00000621856 CCDC30Q5VVM6 783 aa27.25■■□□□ 1.95
SPAST-204ENST00000621856 LARP1Q6PKG0 1096 aaKnown RBP27.24■■□□□ 1.95
SPAST-204ENST00000621856 PCDHB15Q9Y5E8 787 aa27.24■■□□□ 1.95
SPAST-204ENST00000621856 PTPRCP08575 1304 aa27.24■■□□□ 1.95
SPAST-204ENST00000621856 EIF4A1P60842 406 aaKnown RBP27.24■■□□□ 1.95
SPAST-204ENST00000621856 IGHDP01880 384 aa27.23■■□□□ 1.95
SPAST-204ENST00000621856 BTG4Q9NY30 223 aa27.22■■□□□ 1.95
SPAST-204ENST00000621856 KDM6AO15550 1401 aaPredicted RBP27.22■■□□□ 1.95
SPAST-204ENST00000621856 CHMP4BQ9H444 224 aaKnown RBP27.21■■□□□ 1.95
SPAST-204ENST00000621856 KCNQ3O43525 872 aa27.21■■□□□ 1.95
SPAST-204ENST00000621856 NECTIN2Q92692 538 aa27.21■■□□□ 1.95
SPAST-204ENST00000621856 CACNA1FO60840 1977 aa27.2■■□□□ 1.95
SPAST-204ENST00000621856 CYP27B1O15528 508 aa27.2■■□□□ 1.94
SPAST-204ENST00000621856 HSP90AB1P08238 724 aaKnown RBP27.2■■□□□ 1.94
SPAST-204ENST00000621856 IL2RBP14784 551 aa27.2■■□□□ 1.94
SPAST-204ENST00000621856 ZCRB1Q8TBF4 217 aaKnown RBP27.19■■□□□ 1.94
SPAST-204ENST00000621856 ZBTB40Q9NUA8 1239 aa27.19■■□□□ 1.94
SPAST-204ENST00000621856 UBAP1LF5GYI3 381 aa27.19■■□□□ 1.94
SPAST-204ENST00000621856 HDGFL1Q5TGJ6 251 aa27.19■■□□□ 1.94
SPAST-204ENST00000621856 DCAF5Q96JK2 942 aa27.19■■□□□ 1.94
SPAST-204ENST00000621856 RWDD1Q9H446 243 aaPredicted RBP27.19■■□□□ 1.94
SPAST-204ENST00000621856 HOXB7P09629 217 aa27.18■■□□□ 1.94
SPAST-204ENST00000621856 AEBP2Q6ZN18 517 aaPredicted RBP27.18■■□□□ 1.94
SPAST-204ENST00000621856 SLC52A2Q9HAB3 445 aa27.18■■□□□ 1.94
SPAST-204ENST00000621856 RGS12O14924 1447 aa27.17■■□□□ 1.94
SPAST-204ENST00000621856 CHMP4AQ9BY43 222 aa27.17■■□□□ 1.94
SPAST-204ENST00000621856 PCDH11XQ9BZA7 1347 aa27.17■■□□□ 1.94
SPAST-204ENST00000621856 PCDH11YQ9BZA8 1340 aa27.17■■□□□ 1.94
SPAST-204ENST00000621856 G2E3Q7L622 706 aa27.16■■□□□ 1.94
SPAST-204ENST00000621856 ZBTB7BO15156 539 aaPredicted RBP27.15■■□□□ 1.94
SPAST-204ENST00000621856 EIF2S2P20042 333 aaKnown RBP27.14■■□□□ 1.94
SPAST-204ENST00000621856 INTS3Q68E01 1043 aaKnown RBP27.14■■□□□ 1.94
SPAST-204ENST00000621856 USP35Q9P2H5 1018 aa27.14■■□□□ 1.94
SPAST-204ENST00000621856 MRC1P22897 1456 aa27.13■■□□□ 1.93
SPAST-204ENST00000621856 SKAP1Q86WV1 359 aa27.13■■□□□ 1.93
SPAST-204ENST00000621856 NFATC2IPQ8NCF5 419 aa27.13■■□□□ 1.93
SPAST-204ENST00000621856 FLIIQ13045 1269 aa27.12■■□□□ 1.93
SPAST-204ENST00000621856 PLCH1Q4KWH8 1693 aa27.11■■□□□ 1.93
SPAST-204ENST00000621856 ADAMTS2O95450 1211 aa27.11■■□□□ 1.93
SPAST-204ENST00000621856 SHANK3Q9BYB0 1731 aa27.11■■□□□ 1.93
SPAST-204ENST00000621856 CABP4P57796 275 aa27.1■■□□□ 1.93
SPAST-204ENST00000621856 FKBP5Q13451 457 aaPredicted RBP27.1■■□□□ 1.93
SPAST-204ENST00000621856 NUTM2BA6NNL0 878 aaPredicted RBP27.09■■□□□ 1.93
SPAST-204ENST00000621856 NUTM2EB1AL46 878 aaPredicted RBP27.09■■□□□ 1.93
SPAST-204ENST00000621856 HDAC1Q13547 482 aaPredicted RBP27.09■■□□□ 1.93
SPAST-204ENST00000621856 ZNF790Q6PG37 636 aa27.09■■□□□ 1.93
SPAST-204ENST00000621856 NUTM2AQ8IVF1 878 aaPredicted RBP27.09■■□□□ 1.93
SPAST-204ENST00000621856 GIGYF1O75420 1035 aaPredicted RBP27.08■■□□□ 1.93
SPAST-204ENST00000621856 SLC39A6Q13433 755 aa27.08■■□□□ 1.93
SPAST-204ENST00000621856 DDX54Q8TDD1 881 aaKnown RBP27.08■■□□□ 1.93
SPAST-204ENST00000621856 HEG1Q9ULI3 1381 aa27.08■■□□□ 1.93
SPAST-204ENST00000621856 SLC4A10Q6U841 1118 aa27.07■■□□□ 1.92
SPAST-204ENST00000621856 F6X3S4 739 aa27.07■■□□□ 1.92
SPAST-204ENST00000621856 CHPF2Q9P2E5 772 aa27.07■■□□□ 1.92
SPAST-204ENST00000621856 CCT4P50991 539 aaKnown RBP27.06■■□□□ 1.92
SPAST-204ENST00000621856 C1orf115Q9H7X2 142 aa27.06■■□□□ 1.92
SPAST-204ENST00000621856 TTC5Q8N0Z6 440 aa27.05■■□□□ 1.92
SPAST-204ENST00000621856 RGS3P49796 1198 aa27.04■■□□□ 1.92
SPAST-204ENST00000621856 NKX1-1Q15270 411 aaPredicted RBP27.04■■□□□ 1.92
SPAST-204ENST00000621856 RBM19Q9Y4C8 960 aaKnown RBP27.04■■□□□ 1.92
SPAST-204ENST00000621856 PHAXQ9H814 394 aaKnown RBP27.03■■□□□ 1.92
SPAST-204ENST00000621856 NRAPQ86VF7 1730 aa27.03■■□□□ 1.92
SPAST-204ENST00000621856 ERVV-2B6SEH9 535 aa27.02■■□□□ 1.92
SPAST-204ENST00000621856 DBF4Q9UBU7 674 aaPredicted RBP27.02■■□□□ 1.92
SPAST-204ENST00000621856 C5P01031 1676 aa27.02■■□□□ 1.92
SPAST-204ENST00000621856 PRAMEF22A3QJZ6 481 aa27.02■■□□□ 1.92
SPAST-204ENST00000621856 DISP2A7MBM2 1401 aa27.01■■□□□ 1.91
SPAST-204ENST00000621856 WNK3Q9BYP7 1800 aa27.01■■□□□ 1.91
SPAST-204ENST00000621856 N4BP2Q86UW6 1770 aaPredicted RBP27■■□□□ 1.91
SPAST-204ENST00000621856 PDZRN3Q9UPQ7 1066 aa27■■□□□ 1.91
SPAST-204ENST00000621856 PXDNLA1KZ92 1463 aa26.99■■□□□ 1.91
SPAST-204ENST00000621856 ZNF496Q96IT1 587 aaPredicted RBP26.99■■□□□ 1.91
SPAST-204ENST00000621856 FMNL2Q96PY5 1086 aa26.99■■□□□ 1.91
SPAST-204ENST00000621856 ANXA1P04083 346 aa26.99■■□□□ 1.91
SPAST-204ENST00000621856 CERKQ8TCT0 537 aa26.98■■□□□ 1.91
SPAST-204ENST00000621856 NWD2Q9ULI1 1742 aa26.97■■□□□ 1.91
SPAST-204ENST00000621856 MEIS3Q99687 375 aa26.97■■□□□ 1.91
SPAST-204ENST00000621856 JCADQ9P266 1359 aa26.96■■□□□ 1.91
SPAST-204ENST00000621856 SNRPA1P09661 255 aaKnown RBP26.96■■□□□ 1.91
SPAST-204ENST00000621856 SMC5Q8IY18 1101 aa26.96■■□□□ 1.91
SPAST-204ENST00000621856 TOGARAM1Q9Y4F4 1720 aa26.96■■□□□ 1.91
SPAST-204ENST00000621856 HYPKQ9NX55 129 aa26.95■■□□□ 1.9
SPAST-204ENST00000621856 PROSER3Q2NL68 480 aa26.93■■□□□ 1.9
SPAST-204ENST00000621856 DDX21Q9NR30 783 aaKnown RBP eCLIP26.93■■□□□ 1.9
SPAST-204ENST00000621856 PAPPAQ13219 1627 aa26.93■■□□□ 1.9
SPAST-204ENST00000621856 SPATA31A1Q5TZJ5 1347 aa26.93■■□□□ 1.9
SPAST-204ENST00000621856 EXOC5O00471 708 aa26.93■■□□□ 1.9
SPAST-204ENST00000621856 SIRT2Q8IXJ6 389 aa26.93■■□□□ 1.9
SPAST-204ENST00000621856 PDE4AP27815 886 aa26.92■■□□□ 1.9
SPAST-204ENST00000621856 SLIT2O94813 1529 aa26.92■■□□□ 1.9
SPAST-204ENST00000621856 LAMB4A4D0S4 1761 aa26.91■■□□□ 1.9
SPAST-204ENST00000621856 UBR2Q8IWV8 1755 aa26.91■■□□□ 1.9
SPAST-204ENST00000621856 DNAAF4Q8WXU2 420 aa26.91■■□□□ 1.9
SPAST-204ENST00000621856 CDCA7Q9BWT1 371 aaPredicted RBP26.91■■□□□ 1.9
SPAST-204ENST00000621856 TMOD3Q9NYL9 352 aa26.91■■□□□ 1.9
SPAST-204ENST00000621856 THRAP3Q9Y2W1 955 aaKnown RBP26.91■■□□□ 1.9
SPAST-204ENST00000621856 PI4KAP2A4QPH2 592 aa26.9■■□□□ 1.9
SPAST-204ENST00000621856 PI4KAP1Q8N8J0 262 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms