RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 FAM181BA6NEQ2 426 aa10.96□□□□□ -0.65
VPS29-212ENST00000621131 F11P03951 625 aa10.96□□□□□ -0.65
VPS29-212ENST00000621131 PHKA2P46019 1235 aa10.96□□□□□ -0.65
VPS29-212ENST00000621131 EML3Q32P44 896 aa10.96□□□□□ -0.65
VPS29-212ENST00000621131 C4orf17Q53FE4 359 aa10.96□□□□□ -0.65
VPS29-212ENST00000621131 TMEM214Q6NUQ4 689 aaKnown RBP10.96□□□□□ -0.65
VPS29-212ENST00000621131 PPARGC1BQ86YN6 1023 aaKnown RBP10.96□□□□□ -0.65
VPS29-212ENST00000621131 TMEM229AB2RXF0 380 aa10.95□□□□□ -0.66
VPS29-212ENST00000621131 H7C1W4 665 aa10.94□□□□□ -0.66
VPS29-212ENST00000621131 GAS6Q14393 721 aa10.94□□□□□ -0.66
VPS29-212ENST00000621131 TLR1Q15399 786 aa10.94□□□□□ -0.66
VPS29-212ENST00000621131 GNASQ5JWF2 1037 aa10.94□□□□□ -0.66
VPS29-212ENST00000621131 SLC4A9Q96Q91 983 aa10.94□□□□□ -0.66
VPS29-212ENST00000621131 NOD1Q9Y239 953 aa10.94□□□□□ -0.66
VPS29-212ENST00000621131 SLURP2P0DP57 97 aa10.93□□□□□ -0.66
VPS29-212ENST00000621131 GTF2E1P29083 439 aaPredicted RBP10.93□□□□□ -0.66
VPS29-212ENST00000621131 NCOA4Q13772 614 aa10.93□□□□□ -0.66
VPS29-212ENST00000621131 TBC1D9Q6ZT07 1266 aa10.93□□□□□ -0.66
VPS29-212ENST00000621131 RHBDD1Q8TEB9 315 aa10.93□□□□□ -0.66
VPS29-212ENST00000621131 UCN2Q96RP3 112 aa10.93□□□□□ -0.66
VPS29-212ENST00000621131 USP17L5A8MUK1 530 aa10.92□□□□□ -0.66
VPS29-212ENST00000621131 SMTNP53814 917 aa10.92□□□□□ -0.66
VPS29-212ENST00000621131 PROSER2Q86WR7 435 aaPredicted RBP10.92□□□□□ -0.66
VPS29-212ENST00000621131 DEPDC4Q8N2C3 294 aa10.92□□□□□ -0.66
VPS29-212ENST00000621131 A0A1B0GTH6 734 aa10.91□□□□□ -0.66
VPS29-212ENST00000621131 A6NJR5 290 aa10.91□□□□□ -0.66
VPS29-212ENST00000621131 THBS1P07996 1170 aa10.91□□□□□ -0.66
VPS29-212ENST00000621131 GTF2IP78347 998 aa10.91□□□□□ -0.66
VPS29-212ENST00000621131 GTPBP3Q969Y2 492 aaKnown RBP10.91□□□□□ -0.66
VPS29-212ENST00000621131 SERTAD1Q9UHV2 236 aa10.91□□□□□ -0.66
VPS29-212ENST00000621131 GPR25O00155 361 aa10.9□□□□□ -0.66
VPS29-212ENST00000621131 MTFR1Q15390 333 aa10.9□□□□□ -0.66
VPS29-212ENST00000621131 FOXR1Q6PIV2 292 aa10.9□□□□□ -0.66
VPS29-212ENST00000621131 PLEKHM2Q8IWE5 1019 aa10.9□□□□□ -0.66
VPS29-212ENST00000621131 MSX1P28360 303 aa10.89□□□□□ -0.67
VPS29-212ENST00000621131 SRSF11Q05519 484 aaKnown RBP10.89□□□□□ -0.67
VPS29-212ENST00000621131 ZNF385CQ66K41 422 aaPredicted RBP10.89□□□□□ -0.67
VPS29-212ENST00000621131 WHAMMQ8TF30 809 aa10.89□□□□□ -0.67
VPS29-212ENST00000621131 NUCKS1Q9H1E3 243 aaKnown RBP10.89□□□□□ -0.67
VPS29-212ENST00000621131 GPAMQ9HCL2 828 aa10.89□□□□□ -0.67
VPS29-212ENST00000621131 CDK2AP1O14519 115 aa10.88□□□□□ -0.67
VPS29-212ENST00000621131 ZBTB7BO15156 539 aaPredicted RBP10.88□□□□□ -0.67
VPS29-212ENST00000621131 ATP9BO43861 1147 aa10.88□□□□□ -0.67
VPS29-212ENST00000621131 ZNF295-AS1Q8N0V1 137 aa10.88□□□□□ -0.67
VPS29-212ENST00000621131 IQSEC3Q9UPP2 1182 aaPredicted RBP10.88□□□□□ -0.67
VPS29-212ENST00000621131 A6NJY4 79 aa10.87□□□□□ -0.67
VPS29-212ENST00000621131 ADAMTS2O95450 1211 aa10.87□□□□□ -0.67
VPS29-212ENST00000621131 USP17L3A6NCW0 530 aa10.86□□□□□ -0.67
VPS29-212ENST00000621131 USP17L4A6NCW7 530 aa10.86□□□□□ -0.67
VPS29-212ENST00000621131 UBAP2LQ14157 1087 aaKnown RBP10.86□□□□□ -0.67
VPS29-212ENST00000621131 USP17L2Q6R6M4 530 aa10.86□□□□□ -0.67
VPS29-212ENST00000621131 USP17L1Q7RTZ2 530 aa10.86□□□□□ -0.67
VPS29-212ENST00000621131 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS29-212ENST00000621131 GLMNQ92990 594 aa10.86□□□□□ -0.67
VPS29-212ENST00000621131 NIFKQ9BYG3 293 aaKnown RBP10.86□□□□□ -0.67
VPS29-212ENST00000621131 MBIPQ9NS73 344 aa10.86□□□□□ -0.67
VPS29-212ENST00000621131 USP3Q9Y6I4 520 aa10.86□□□□□ -0.67
VPS29-212ENST00000621131 RUBCNLQ9H714 662 aa10.85□□□□□ -0.67
VPS29-212ENST00000621131 ZNF358Q9NW07 568 aa10.85□□□□□ -0.67
VPS29-212ENST00000621131 BACH1O14867 736 aa10.84□□□□□ -0.67
VPS29-212ENST00000621131 PLA2G4AP47712 749 aa10.84□□□□□ -0.67
VPS29-212ENST00000621131 LBRQ14739 615 aaKnown RBP10.84□□□□□ -0.67
VPS29-212ENST00000621131 TRIM50Q86XT4 487 aa10.84□□□□□ -0.67
VPS29-212ENST00000621131 TRERF1Q96PN7 1200 aa10.84□□□□□ -0.67
VPS29-212ENST00000621131 ARHGEF15O94989 841 aa10.83□□□□□ -0.68
VPS29-212ENST00000621131 CLDN10P78369 228 aa10.83□□□□□ -0.68
VPS29-212ENST00000621131 LYPD4Q6UWN0 246 aa10.83□□□□□ -0.68
VPS29-212ENST00000621131 CFHR5Q9BXR6 569 aa10.83□□□□□ -0.68
VPS29-212ENST00000621131 CRISPLD1Q9H336 500 aa10.83□□□□□ -0.68
VPS29-212ENST00000621131 TFIP11Q9UBB9 837 aaKnown RBP10.83□□□□□ -0.68
VPS29-212ENST00000621131 ADAMTS8Q9UP79 889 aa10.83□□□□□ -0.68
VPS29-212ENST00000621131 KIAA1024Q9UPX6 916 aa10.83□□□□□ -0.68
VPS29-212ENST00000621131 IGF1RP08069 1367 aa10.82□□□□□ -0.68
VPS29-212ENST00000621131 CSB-PGBD3P0DP91 1061 aa10.82□□□□□ -0.68
VPS29-212ENST00000621131 PSME1Q06323 249 aa10.82□□□□□ -0.68
VPS29-212ENST00000621131 PGBD3Q8N328 593 aa10.82□□□□□ -0.68
VPS29-212ENST00000621131 MKRN1Q9UHC7 482 aaKnown RBP10.82□□□□□ -0.68
VPS29-212ENST00000621131 EPHA4P54764 986 aa10.81□□□□□ -0.68
VPS29-212ENST00000621131 SVOPQ8N4V2 548 aa10.81□□□□□ -0.68
VPS29-212ENST00000621131 SCHIP1Q9P0W5 487 aaPredicted RBP10.81□□□□□ -0.68
VPS29-212ENST00000621131 CELA2BP08218 269 aaPredicted RBP10.8□□□□□ -0.68
VPS29-212ENST00000621131 ATP4AP20648 1035 aa10.8□□□□□ -0.68
VPS29-212ENST00000621131 ATP1A2P50993 1020 aa10.8□□□□□ -0.68
VPS29-212ENST00000621131 FOXK2Q01167 660 aa10.8□□□□□ -0.68
VPS29-212ENST00000621131 CCDC102BQ68D86 513 aa10.8□□□□□ -0.68
VPS29-212ENST00000621131 C1orf216Q8TAB5 229 aa10.8□□□□□ -0.68
VPS29-212ENST00000621131 AIDAQ96BJ3 306 aa10.8□□□□□ -0.68
VPS29-212ENST00000621131 CABP1Q9NZU7 370 aa10.8□□□□□ -0.68
VPS29-212ENST00000621131 MX2P20592 715 aa10.79□□□□□ -0.68
VPS29-212ENST00000621131 EFHC2Q5JST6 749 aa10.79□□□□□ -0.68
VPS29-212ENST00000621131 TNS4Q8IZW8 715 aa10.79□□□□□ -0.68
VPS29-212ENST00000621131 LARGE2Q8N3Y3 721 aa10.79□□□□□ -0.68
VPS29-212ENST00000621131 OGFOD1Q8N543 542 aa10.79□□□□□ -0.68
VPS29-212ENST00000621131 TPCN2Q8NHX9 752 aa10.79□□□□□ -0.68
VPS29-212ENST00000621131 CALR3Q96L12 384 aaKnown RBP10.79□□□□□ -0.68
VPS29-212ENST00000621131 NDFIP2Q9NV92 336 aa10.79□□□□□ -0.68
VPS29-212ENST00000621131 DNAAF2Q9NVR5 837 aaKnown RBP10.79□□□□□ -0.68
VPS29-212ENST00000621131 PALM3A6NDB9 673 aaPredicted RBP10.78□□□□□ -0.68
VPS29-212ENST00000621131 DKK1O94907 266 aa10.78□□□□□ -0.68
VPS29-212ENST00000621131 MAFBQ9Y5Q3 323 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms