RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 AK7Q96M32 723 aa23.25■■□□□ 1.31
HMGN3-203ENST00000620514 DCAF8L1A6NGE4 600 aa23.24■■□□□ 1.31
HMGN3-203ENST00000620514 DIAPH1O60610 1272 aaKnown RBP23.24■■□□□ 1.31
HMGN3-203ENST00000620514 HMGB2P26583 209 aaKnown RBP23.24■■□□□ 1.31
HMGN3-203ENST00000620514 ATP6V1AP38606 617 aa23.24■■□□□ 1.31
HMGN3-203ENST00000620514 CABP4P57796 275 aa23.23■■□□□ 1.31
HMGN3-203ENST00000620514 KLHL34Q8N239 644 aa23.23■■□□□ 1.31
HMGN3-203ENST00000620514 MAP3K5Q99683 1374 aa23.23■■□□□ 1.31
HMGN3-203ENST00000620514 PHF14O94880 888 aa23.22■■□□□ 1.31
HMGN3-203ENST00000620514 SLC4A9Q96Q91 983 aa23.22■■□□□ 1.31
HMGN3-203ENST00000620514 COL3A1P02461 1466 aaPredicted RBP23.22■■□□□ 1.31
HMGN3-203ENST00000620514 FLAD1Q8NFF5 587 aa23.21■■□□□ 1.31
HMGN3-203ENST00000620514 UBR3Q6ZT12 1888 aa23.21■■□□□ 1.31
HMGN3-203ENST00000620514 RBM42Q9BTD8 480 aaKnown RBP23.2■■□□□ 1.3
HMGN3-203ENST00000620514 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.19■■□□□ 1.3
HMGN3-203ENST00000620514 AKAP4Q5JQC9 854 aa23.18■■□□□ 1.3
HMGN3-203ENST00000620514 NFATC2IPQ8NCF5 419 aa23.18■■□□□ 1.3
HMGN3-203ENST00000620514 GNPATO15228 680 aa23.17■■□□□ 1.3
HMGN3-203ENST00000620514 YY1P25490 414 aa23.16■■□□□ 1.3
HMGN3-203ENST00000620514 SSFA2P28290 1259 aa23.16■■□□□ 1.3
HMGN3-203ENST00000620514 MTHFSDQ2M296 383 aaKnown RBP23.16■■□□□ 1.3
HMGN3-203ENST00000620514 NLGN2Q8NFZ4 835 aa23.16■■□□□ 1.3
HMGN3-203ENST00000620514 LGR6Q9HBX8 967 aa23.16■■□□□ 1.3
HMGN3-203ENST00000620514 SCN11AQ9UI33 1791 aa23.16■■□□□ 1.3
HMGN3-203ENST00000620514 U2SURPO15042 1029 aaKnown RBP23.15■■□□□ 1.3
HMGN3-203ENST00000620514 PTCD1O75127 700 aaKnown RBP23.14■■□□□ 1.29
HMGN3-203ENST00000620514 ZNF831Q5JPB2 1677 aa23.13■■□□□ 1.29
HMGN3-203ENST00000620514 RNMTO43148 476 aaKnown RBP23.13■■□□□ 1.29
HMGN3-203ENST00000620514 SLC52A2Q9HAB3 445 aa23.12■■□□□ 1.29
HMGN3-203ENST00000620514 COL5A3P25940 1745 aaPredicted RBP23.11■■□□□ 1.29
HMGN3-203ENST00000620514 PPP2R1AP30153 589 aa23.1■■□□□ 1.29
HMGN3-203ENST00000620514 GPR162Q16538 588 aa23.09■■□□□ 1.29
HMGN3-203ENST00000620514 RC3H1Q5TC82 1133 aaKnown RBP23.09■■□□□ 1.29
HMGN3-203ENST00000620514 RTCBQ9Y3I0 505 aaKnown RBP23.09■■□□□ 1.29
HMGN3-203ENST00000620514 MRC1P22897 1456 aa23.09■■□□□ 1.29
HMGN3-203ENST00000620514 CNTNAP4Q9C0A0 1308 aa23.08■■□□□ 1.29
HMGN3-203ENST00000620514 CFAP53Q96M91 514 aa23.08■■□□□ 1.29
HMGN3-203ENST00000620514 ADAMTS7Q9UKP4 1686 aa23.07■■□□□ 1.28
HMGN3-203ENST00000620514 SLC39A6Q13433 755 aa23.07■■□□□ 1.28
HMGN3-203ENST00000620514 TRAPPC3LQ5T215 181 aa23.07■■□□□ 1.28
HMGN3-203ENST00000620514 PELP1Q8IZL8 1130 aaKnown RBP23.07■■□□□ 1.28
HMGN3-203ENST00000620514 VIRMAQ69YN4 1812 aaKnown RBP23.07■■□□□ 1.28
HMGN3-203ENST00000620514 TJP1Q07157 1748 aa23.06■■□□□ 1.28
HMGN3-203ENST00000620514 MYH14Q7Z406 1995 aaKnown RBP23.06■■□□□ 1.28
HMGN3-203ENST00000620514 RPS6KA4O75676 772 aa23.05■■□□□ 1.28
HMGN3-203ENST00000620514 ARHGEF1Q92888 912 aaKnown RBP23.05■■□□□ 1.28
HMGN3-203ENST00000620514 CRKLP46109 303 aaKnown RBP23.04■■□□□ 1.28
HMGN3-203ENST00000620514 CD2APQ9Y5K6 639 aa23.04■■□□□ 1.28
HMGN3-203ENST00000620514 PRKAR2BP31323 418 aa23.03■■□□□ 1.28
HMGN3-203ENST00000620514 DNAJC10Q8IXB1 793 aa23.03■■□□□ 1.28
HMGN3-203ENST00000620514 GAS2L2Q8NHY3 880 aa23.03■■□□□ 1.28
HMGN3-203ENST00000620514 PHACTR3Q96KR7 559 aa23.03■■□□□ 1.28
HMGN3-203ENST00000620514 RSPH6AQ9H0K4 717 aa23.03■■□□□ 1.28
HMGN3-203ENST00000620514 CICQ96RK0 1608 aaPredicted RBP23.02■■□□□ 1.28
HMGN3-203ENST00000620514 ADRA2BP18089 450 aa23.02■■□□□ 1.28
HMGN3-203ENST00000620514 IL17REQ8NFR9 667 aa23.02■■□□□ 1.28
HMGN3-203ENST00000620514 NUDCQ9Y266 331 aa23.02■■□□□ 1.28
HMGN3-203ENST00000620514 KCPQ6ZWJ8 1503 aa23.02■■□□□ 1.28
HMGN3-203ENST00000620514 MMP10P09238 476 aa23.01■■□□□ 1.27
HMGN3-203ENST00000620514 YBX3P16989 372 aaKnown RBP eCLIP23.01■■□□□ 1.276e-6■□□□□ 10.6
HMGN3-203ENST00000620514 UTRNP46939 3433 aa23.01■■□□□ 1.27
HMGN3-203ENST00000620514 GNAT3A8MTJ3 354 aa23■■□□□ 1.27
HMGN3-203ENST00000620514 U2AF1L5P0DN76 240 aaPredicted RBP23■■□□□ 1.27
HMGN3-203ENST00000620514 RFC4P35249 363 aa23■■□□□ 1.27
HMGN3-203ENST00000620514 U2AF1Q01081 240 aaKnown RBP eCLIP23■■□□□ 1.277e-10■■■■■ 33.4
HMGN3-203ENST00000620514 INTS5Q6P9B9 1019 aaKnown RBP23■■□□□ 1.27
HMGN3-203ENST00000620514 GYS1P13807 737 aa22.99■■□□□ 1.27
HMGN3-203ENST00000620514 C4AP0C0L4 1744 aa22.99■■□□□ 1.27
HMGN3-203ENST00000620514 NLGN1Q8N2Q7 840 aa22.97■■□□□ 1.27
HMGN3-203ENST00000620514 SRP68Q9UHB9 627 aaKnown RBP22.97■■□□□ 1.27
HMGN3-203ENST00000620514 CHD4Q14839 1912 aa22.97■■□□□ 1.27
HMGN3-203ENST00000620514 CYP19A1P11511 503 aaPredicted RBP22.96■■□□□ 1.27
HMGN3-203ENST00000620514 TEFQ10587 303 aa22.96■■□□□ 1.27
HMGN3-203ENST00000620514 CCDC87Q9NVE4 849 aa22.96■■□□□ 1.27
HMGN3-203ENST00000620514 WWC3Q9ULE0 1092 aa22.95■■□□□ 1.26
HMGN3-203ENST00000620514 UBR2Q8IWV8 1755 aa22.94■■□□□ 1.26
HMGN3-203ENST00000620514 CEMIPQ8WUJ3 1361 aa22.93■■□□□ 1.26
HMGN3-203ENST00000620514 SOS1Q07889 1333 aaPredicted RBP22.93■■□□□ 1.26
HMGN3-203ENST00000620514 USP42Q9H9J4 1324 aaKnown RBP22.93■■□□□ 1.26
HMGN3-203ENST00000620514 FCHSD2O94868 740 aa22.93■■□□□ 1.26
HMGN3-203ENST00000620514 TTC5Q8N0Z6 440 aa22.93■■□□□ 1.26
HMGN3-203ENST00000620514 ZNF784Q8NCA9 323 aaPredicted RBP22.93■■□□□ 1.26
HMGN3-203ENST00000620514 SIPA1L3O60292 1781 aaPredicted RBP22.93■■□□□ 1.26
HMGN3-203ENST00000620514 GRIN3BO60391 1043 aa22.92■■□□□ 1.26
HMGN3-203ENST00000620514 FKBP8Q14318 412 aa22.92■■□□□ 1.26
HMGN3-203ENST00000620514 VSIG10Q8N0Z9 540 aa22.92■■□□□ 1.26
HMGN3-203ENST00000620514 ZNF496Q96IT1 587 aaPredicted RBP22.92■■□□□ 1.26
HMGN3-203ENST00000620514 ZBTB1Q9Y2K1 713 aa22.92■■□□□ 1.26
HMGN3-203ENST00000620514 ZNF790Q6PG37 636 aa22.91■■□□□ 1.26
HMGN3-203ENST00000620514 PARP3Q9Y6F1 533 aa22.9■■□□□ 1.26
HMGN3-203ENST00000620514 GOLGB1Q14789 3259 aaKnown RBP22.9■■□□□ 1.26
HMGN3-203ENST00000620514 KCNQ3O43525 872 aa22.89■■□□□ 1.25
HMGN3-203ENST00000620514 USPL1Q5W0Q7 1092 aa22.89■■□□□ 1.25
HMGN3-203ENST00000620514 MCM10Q7L590 875 aa22.89■■□□□ 1.25
HMGN3-203ENST00000620514 C10orf71Q711Q0 1435 aa22.89■■□□□ 1.25
HMGN3-203ENST00000620514 PXDNLA1KZ92 1463 aa22.88■■□□□ 1.25
HMGN3-203ENST00000620514 KIF13BQ9NQT8 1826 aa22.88■■□□□ 1.25
HMGN3-203ENST00000620514 DDR1Q08345 913 aa22.88■■□□□ 1.25
HMGN3-203ENST00000620514 DDX10Q13206 875 aaKnown RBP22.88■■□□□ 1.25
HMGN3-203ENST00000620514 COL15A1P39059 1388 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms