RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 MPRIPQ6WCQ1 1025 aa10.46□□□□□ -0.73
CPNE3-209ENST00000620393 DDX54Q8TDD1 881 aaKnown RBP10.46□□□□□ -0.73
CPNE3-209ENST00000620393 CFAP44Q96MT7 982 aa10.46□□□□□ -0.73
CPNE3-209ENST00000620393 MAP3K5Q99683 1374 aa10.46□□□□□ -0.74
CPNE3-209ENST00000620393 DISP2A7MBM2 1401 aa10.46□□□□□ -0.74
CPNE3-209ENST00000620393 RGPD5Q99666 1765 aa10.46□□□□□ -0.74
CPNE3-209ENST00000620393 PCDH11XQ9BZA7 1347 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 PCDH11YQ9BZA8 1340 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 CHL1O00533 1208 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 GNAI1P63096 354 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 TAF7Q15545 349 aaPredicted RBP10.45□□□□□ -0.74
CPNE3-209ENST00000620393 DDB1Q16531 1140 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 FAM98CQ17RN3 349 aaKnown RBP10.45□□□□□ -0.74
CPNE3-209ENST00000620393 DCAF5Q96JK2 942 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 MYH16Q9H6N6 1097 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 IFT57Q9NWB7 429 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 BABAM1Q9NWV8 329 aa10.45□□□□□ -0.74
CPNE3-209ENST00000620393 ATRNO75882 1429 aa10.44□□□□□ -0.74
CPNE3-209ENST00000620393 LAS1LQ9Y4W2 734 aaKnown RBP10.44□□□□□ -0.74
CPNE3-209ENST00000620393 FAM208AQ9UK61 1670 aaKnown RBP10.44□□□□□ -0.74
CPNE3-209ENST00000620393 CEMIPQ8WUJ3 1361 aa10.43□□□□□ -0.74
CPNE3-209ENST00000620393 ERVV-2B6SEH9 535 aa10.43□□□□□ -0.74
CPNE3-209ENST00000620393 RGPD2P0DJD1 1756 aa10.42□□□□□ -0.74
CPNE3-209ENST00000620393 NWD2Q9ULI1 1742 aa10.42□□□□□ -0.74
CPNE3-209ENST00000620393 RBM6P78332 1123 aaKnown RBP10.42□□□□□ -0.74
CPNE3-209ENST00000620393 TEFQ10587 303 aa10.42□□□□□ -0.74
CPNE3-209ENST00000620393 ILDR1Q86SU0 546 aaPredicted RBP10.42□□□□□ -0.74
CPNE3-209ENST00000620393 MBIPQ9NS73 344 aa10.42□□□□□ -0.74
CPNE3-209ENST00000620393 MIS18AQ9NYP9 233 aa10.42□□□□□ -0.74
CPNE3-209ENST00000620393 CABP4P57796 275 aa10.41□□□□□ -0.74
CPNE3-209ENST00000620393 MARCH10Q8NA82 808 aaPredicted RBP10.41□□□□□ -0.74
CPNE3-209ENST00000620393 NFATC2IPQ8NCF5 419 aa10.41□□□□□ -0.74
CPNE3-209ENST00000620393 TSR2Q969E8 191 aaKnown RBP10.41□□□□□ -0.74
CPNE3-209ENST00000620393 SLC52A2Q9HAB3 445 aa10.41□□□□□ -0.74
CPNE3-209ENST00000620393 RGS17Q9UGC6 210 aaPredicted RBP10.41□□□□□ -0.74
CPNE3-209ENST00000620393 NRAPQ86VF7 1730 aa10.41□□□□□ -0.74
CPNE3-209ENST00000620393 FANCIQ9NVI1 1328 aa10.4□□□□□ -0.74
CPNE3-209ENST00000620393 BTBD11A6QL63 1104 aa10.4□□□□□ -0.74
CPNE3-209ENST00000620393 EXOSC9Q06265 439 aaKnown RBP10.4□□□□□ -0.74
CPNE3-209ENST00000620393 SEPT12Q8IYM1 358 aa10.4□□□□□ -0.74
CPNE3-209ENST00000620393 TSPYL4Q9UJ04 414 aa10.4□□□□□ -0.74
CPNE3-209ENST00000620393 PLCH1Q4KWH8 1693 aa10.4□□□□□ -0.74
CPNE3-209ENST00000620393 A0A0G2JS52 829 aa10.39□□□□□ -0.75
CPNE3-209ENST00000620393 CT47B1P0C2W7 299 aaPredicted RBP10.39□□□□□ -0.75
CPNE3-209ENST00000620393 RXRBP28702 533 aa10.39□□□□□ -0.75
CPNE3-209ENST00000620393 MYT1Q01538 1121 aa10.39□□□□□ -0.75
CPNE3-209ENST00000620393 KDM6AO15550 1401 aaPredicted RBP10.39□□□□□ -0.75
CPNE3-209ENST00000620393 C19orf67A6NJJ6 358 aa10.38□□□□□ -0.75
CPNE3-209ENST00000620393 EVX2Q03828 476 aa10.38□□□□□ -0.75
CPNE3-209ENST00000620393 FARP1Q9Y4F1 1045 aaPredicted RBP10.38□□□□□ -0.75
CPNE3-209ENST00000620393 KCNQ3O43525 872 aa10.37□□□□□ -0.75
CPNE3-209ENST00000620393 VAMP4O75379 141 aa10.37□□□□□ -0.75
CPNE3-209ENST00000620393 PRIM1P49642 420 aaKnown RBP10.37□□□□□ -0.75
CPNE3-209ENST00000620393 EIF4A1P60842 406 aaKnown RBP10.37□□□□□ -0.75
CPNE3-209ENST00000620393 TNS2Q63HR2 1409 aa10.37□□□□□ -0.75
CPNE3-209ENST00000620393 POTEAQ6S8J7 498 aa10.37□□□□□ -0.75
CPNE3-209ENST00000620393 C8orf58Q8NAV2 365 aa10.37□□□□□ -0.75
CPNE3-209ENST00000620393 RCAN3Q9UKA8 241 aa10.37□□□□□ -0.75
CPNE3-209ENST00000620393 ZNF790Q6PG37 636 aa10.36□□□□□ -0.75
CPNE3-209ENST00000620393 TSPYL6Q8N831 410 aa10.36□□□□□ -0.75
CPNE3-209ENST00000620393 PIGBQ92521 554 aa10.36□□□□□ -0.75
CPNE3-209ENST00000620393 ZNF428Q96B54 188 aa10.36□□□□□ -0.75
CPNE3-209ENST00000620393 TMOD3Q9NYL9 352 aa10.36□□□□□ -0.75
CPNE3-209ENST00000620393 ELL2O00472 640 aaPredicted RBP10.35□□□□□ -0.75
CPNE3-209ENST00000620393 SLC39A6Q13433 755 aa10.35□□□□□ -0.75
CPNE3-209ENST00000620393 TWISTNBQ3B726 338 aaPredicted RBP10.35□□□□□ -0.75
CPNE3-209ENST00000620393 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.35□□□□□ -0.75
CPNE3-209ENST00000620393 GLI3P10071 1580 aa10.35□□□□□ -0.75
CPNE3-209ENST00000620393 SOS1Q07889 1333 aaPredicted RBP10.34□□□□□ -0.75
CPNE3-209ENST00000620393 PKD1L3Q7Z443 1732 aa10.34□□□□□ -0.75
CPNE3-209ENST00000620393 PARP4Q9UKK3 1724 aaKnown RBP10.34□□□□□ -0.75
CPNE3-209ENST00000620393 RARSP54136 660 aaKnown RBP10.34□□□□□ -0.75
CPNE3-209ENST00000620393 KRT24Q2M2I5 525 aa10.34□□□□□ -0.75
CPNE3-209ENST00000620393 KRT27Q7Z3Y8 459 aa10.34□□□□□ -0.75
CPNE3-209ENST00000620393 TTC5Q8N0Z6 440 aa10.34□□□□□ -0.75
CPNE3-209ENST00000620393 SYTL4Q96C24 671 aaPredicted RBP10.34□□□□□ -0.75
CPNE3-209ENST00000620393 ACSBG1Q96GR2 724 aa10.34□□□□□ -0.75
CPNE3-209ENST00000620393 SUPT16HQ9Y5B9 1047 aaKnown RBP10.34□□□□□ -0.75
CPNE3-209ENST00000620393 KCNQ2O43526 872 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 GIGYF1O75420 1035 aaPredicted RBP10.33□□□□□ -0.76
CPNE3-209ENST00000620393 HOXB7P09629 217 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 ALDH1L2Q3SY69 923 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 FAM182BQ5T319 152 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 FAM196AQ6ZSG2 479 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 PROM2Q8N271 834 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 ZNF496Q96IT1 587 aaPredicted RBP10.33□□□□□ -0.76
CPNE3-209ENST00000620393 FMNL2Q96PY5 1086 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 CHMP4AQ9BY43 222 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 CREBZFQ9NS37 354 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 ATG3Q9NT62 314 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 ASAP1Q9ULH1 1129 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 BCL9O00512 1426 aa10.33□□□□□ -0.76
CPNE3-209ENST00000620393 HEG1Q9ULI3 1381 aa10.32□□□□□ -0.76
CPNE3-209ENST00000620393 BCAR3O75815 825 aa10.32□□□□□ -0.76
CPNE3-209ENST00000620393 SSH1Q8WYL5 1049 aa10.32□□□□□ -0.76
CPNE3-209ENST00000620393 ADAMTS7Q9UKP4 1686 aa10.31□□□□□ -0.76
CPNE3-209ENST00000620393 DLG5Q8TDM6 1919 aa10.31□□□□□ -0.76
CPNE3-209ENST00000620393 MRC1P22897 1456 aa10.31□□□□□ -0.76
CPNE3-209ENST00000620393 SNRPA1P09661 255 aaKnown RBP10.31□□□□□ -0.76
CPNE3-209ENST00000620393 BRPF1P55201 1214 aaPredicted RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms