RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 CNTNAP4Q9C0A0 1308 aa6.59□□□□□ -1.35
SNCA-213ENST00000618500 ZBTB7CA1YPR0 619 aa6.59□□□□□ -1.35
SNCA-213ENST00000618500 DSG3P32926 999 aa6.59□□□□□ -1.35
SNCA-213ENST00000618500 PRDM10Q9NQV6 1147 aa6.59□□□□□ -1.35
SNCA-213ENST00000618500 TERF2IPQ9NYB0 399 aa6.59□□□□□ -1.35
SNCA-213ENST00000618500 ROCK2O75116 1388 aaKnown RBP6.59□□□□□ -1.36
SNCA-213ENST00000618500 COL13A1Q5TAT6 717 aaPredicted RBP6.58□□□□□ -1.36
SNCA-213ENST00000618500 MRC1P22897 1456 aa6.58□□□□□ -1.36
SNCA-213ENST00000618500 BCORQ6W2J9 1755 aa6.58□□□□□ -1.36
SNCA-213ENST00000618500 AK7Q96M32 723 aa6.58□□□□□ -1.36
SNCA-213ENST00000618500 NME9Q86XW9 330 aa6.58□□□□□ -1.36
SNCA-213ENST00000618500 FLT4P35916 1363 aa6.57□□□□□ -1.36
SNCA-213ENST00000618500 KLHL34Q8N239 644 aa6.57□□□□□ -1.36
SNCA-213ENST00000618500 CCDC88AQ3V6T2 1871 aa6.57□□□□□ -1.36
SNCA-213ENST00000618500 CCDC87Q9NVE4 849 aa6.57□□□□□ -1.36
SNCA-213ENST00000618500 NLGN1Q8N2Q7 840 aa6.56□□□□□ -1.36
SNCA-213ENST00000618500 ANKRD31Q8N7Z5 1873 aa6.56□□□□□ -1.36
SNCA-213ENST00000618500 KAT6BQ8WYB5 2073 aa6.56□□□□□ -1.36
SNCA-213ENST00000618500 TATP17735 454 aaPredicted RBP6.56□□□□□ -1.36
SNCA-213ENST00000618500 C16orf71Q8IYS4 520 aaPredicted RBP6.56□□□□□ -1.36
SNCA-213ENST00000618500 COL11A2P13942 1736 aaPredicted RBP6.56□□□□□ -1.36
SNCA-213ENST00000618500 MYH14Q7Z406 1995 aaKnown RBP6.55□□□□□ -1.36
SNCA-213ENST00000618500 KCNA3P22001 575 aa6.55□□□□□ -1.36
SNCA-213ENST00000618500 MSL1Q68DK7 614 aa6.55□□□□□ -1.36
SNCA-213ENST00000618500 LINC00116Q8NCU8 138 aa6.55□□□□□ -1.36
SNCA-213ENST00000618500 DDX54Q8TDD1 881 aaKnown RBP6.55□□□□□ -1.36
SNCA-213ENST00000618500 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.55□□□□□ -1.36
SNCA-213ENST00000618500 RGS19P49795 217 aa6.55□□□□□ -1.36
SNCA-213ENST00000618500 PPARGC1BQ86YN6 1023 aaKnown RBP6.55□□□□□ -1.36
SNCA-213ENST00000618500 WWC3Q9ULE0 1092 aa6.55□□□□□ -1.36
SNCA-213ENST00000618500 HSPA1AP0DMV8 641 aaKnown RBP6.54□□□□□ -1.36
SNCA-213ENST00000618500 HSPA1BP0DMV9 641 aaKnown RBP6.54□□□□□ -1.36
SNCA-213ENST00000618500 COG3Q96JB2 828 aa6.54□□□□□ -1.36
SNCA-213ENST00000618500 NMRK2Q9NPI5 230 aa6.54□□□□□ -1.36
SNCA-213ENST00000618500 SIPA1L3O60292 1781 aaPredicted RBP6.54□□□□□ -1.36
SNCA-213ENST00000618500 LTBP3Q9NS15 1303 aa6.54□□□□□ -1.36
SNCA-213ENST00000618500 RAPGEF4Q8WZA2 1011 aa6.54□□□□□ -1.36
SNCA-213ENST00000618500 PDZRN3Q9UPQ7 1066 aa6.54□□□□□ -1.36
SNCA-213ENST00000618500 LTBP1Q14766 1721 aa6.54□□□□□ -1.36
SNCA-213ENST00000618500 LOC102724428A0A0B4J2F2 783 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 SIK1P57059 783 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 C9orf131Q5VYM1 1079 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 AMIGO3Q86WK7 504 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 CREBZFQ9NS37 354 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 CNTNAP1P78357 1384 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 NBPF6Q5VWK0 638 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 NBPF4Q96M43 638 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 TRPM7Q96QT4 1865 aa6.53□□□□□ -1.36
SNCA-213ENST00000618500 CYP27B1O15528 508 aa6.52□□□□□ -1.36
SNCA-213ENST00000618500 ZNF526Q8TF50 670 aaPredicted RBP6.52□□□□□ -1.36
SNCA-213ENST00000618500 SPG7Q9UQ90 795 aa6.52□□□□□ -1.36
SNCA-213ENST00000618500 MMP10P09238 476 aa6.52□□□□□ -1.37
SNCA-213ENST00000618500 TMF1P82094 1093 aa6.52□□□□□ -1.37
SNCA-213ENST00000618500 PIGBQ92521 554 aa6.52□□□□□ -1.37
SNCA-213ENST00000618500 PIM2Q9P1W9 311 aa6.52□□□□□ -1.37
SNCA-213ENST00000618500 ERVV-2B6SEH9 535 aa6.52□□□□□ -1.37
SNCA-213ENST00000618500 RPS6KA4O75676 772 aa6.52□□□□□ -1.37
SNCA-213ENST00000618500 SYTL4Q96C24 671 aaPredicted RBP6.52□□□□□ -1.37
SNCA-213ENST00000618500 GLTPD2A6NH11 291 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 GYS1P13807 737 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 DPEP1P16444 411 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 ITPK1Q13572 414 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 DALRD3Q5D0E6 543 aaKnown RBP6.51□□□□□ -1.37
SNCA-213ENST00000618500 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.51□□□□□ -1.37
SNCA-213ENST00000618500 L3MBTL2Q969R5 705 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 AMPHP49418 695 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 KCNQ4P56696 695 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 PASKQ96RG2 1323 aa6.51□□□□□ -1.37
SNCA-213ENST00000618500 ARHGAP27Q6ZUM4 889 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 FOXD4L1Q9NU39 408 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 RTCBQ9Y3I0 505 aaKnown RBP6.5□□□□□ -1.37
SNCA-213ENST00000618500 PARP3Q9Y6F1 533 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 USP42Q9H9J4 1324 aaKnown RBP6.5□□□□□ -1.37
SNCA-213ENST00000618500 FCHSD2O94868 740 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 HSP90AB1P08238 724 aaKnown RBP6.5□□□□□ -1.37
SNCA-213ENST00000618500 VEGFAP15692 232 aaPredicted RBP6.5□□□□□ -1.37
SNCA-213ENST00000618500 TRAPPC3LQ5T215 181 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 GNPATO15228 680 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 LMNB1P20700 586 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 CTCFP49711 727 aaPredicted RBP6.5□□□□□ -1.37
SNCA-213ENST00000618500 ATG3Q9NT62 314 aa6.5□□□□□ -1.37
SNCA-213ENST00000618500 WASHC2AQ641Q2 1341 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 SOX12O15370 315 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 PHKG2P15735 406 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 TM4SF1P30408 202 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 TESK2Q96S53 571 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 TMOD3Q9NYL9 352 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 BCS1LQ9Y276 419 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 SLC12A5Q9H2X9 1139 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 RRAGCQ9HB90 399 aa6.49□□□□□ -1.37
SNCA-213ENST00000618500 IFNL2Q8IZJ0 200 aa6.48□□□□□ -1.37
SNCA-213ENST00000618500 RNF181Q9P0P0 153 aa6.48□□□□□ -1.37
SNCA-213ENST00000618500 A0A0G2JLW4 131 aa6.48□□□□□ -1.37
SNCA-213ENST00000618500 POLRMTO00411 1230 aaKnown RBP6.48□□□□□ -1.37
SNCA-213ENST00000618500 L3MBTL3Q96JM7 780 aaPredicted RBP6.48□□□□□ -1.37
SNCA-213ENST00000618500 CACNA1SQ13698 1873 aa6.48□□□□□ -1.37
SNCA-213ENST00000618500 LAMB1P07942 1786 aa6.48□□□□□ -1.37
SNCA-213ENST00000618500 RGL2O15211 777 aa6.47□□□□□ -1.37
SNCA-213ENST00000618500 CAPN15O75808 1086 aa6.47□□□□□ -1.37
SNCA-213ENST00000618500 CHADLQ6NUI6 762 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms