RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 GNPATO15228 680 aa34.22■■■■□ 3.07
PTPRF-216ENST00000617451 ERVV-2B6SEH9 535 aa34.21■■■■□ 3.07
PTPRF-216ENST00000617451 GIGYF1O75420 1035 aaPredicted RBP34.19■■■■□ 3.06
PTPRF-216ENST00000617451 HSP90AB1P08238 724 aaKnown RBP34.19■■■■□ 3.06
PTPRF-216ENST00000617451 PLEKHO1Q53GL0 409 aaPredicted RBP34.19■■■■□ 3.06
PTPRF-216ENST00000617451 DCAF5Q96JK2 942 aa34.19■■■■□ 3.06
PTPRF-216ENST00000617451 SENP3-EIF4A1A0A087X0R7 540 aa34.17■■■■□ 3.06
PTPRF-216ENST00000617451 KDRP35968 1356 aa34.17■■■■□ 3.06
PTPRF-216ENST00000617451 MORC1Q86VD1 984 aa34.16■■■■□ 3.06
PTPRF-216ENST00000617451 SLC4A9Q96Q91 983 aa34.16■■■■□ 3.06
PTPRF-216ENST00000617451 AMOTQ4VCS5 1084 aa34.15■■■■□ 3.06
PTPRF-216ENST00000617451 ZNF530Q6P9A1 599 aaPredicted RBP34.13■■■■□ 3.05
PTPRF-216ENST00000617451 AEBP1Q8IUX7 1158 aa34.12■■■■□ 3.05
PTPRF-216ENST00000617451 RBM42Q9BTD8 480 aaKnown RBP34.12■■■■□ 3.05
PTPRF-216ENST00000617451 KDM6AO15550 1401 aaPredicted RBP34.12■■■■□ 3.05
PTPRF-216ENST00000617451 CCER1Q8TC90 406 aaPredicted RBP34.11■■■■□ 3.05
PTPRF-216ENST00000617451 RTCBQ9Y3I0 505 aaKnown RBP34.11■■■■□ 3.05
PTPRF-216ENST00000617451 ZNF831Q5JPB2 1677 aa34.1■■■■□ 3.05
PTPRF-216ENST00000617451 CABP4P57796 275 aa34.09■■■■□ 3.05
PTPRF-216ENST00000617451 TRAPPC3LQ5T215 181 aa34.09■■■■□ 3.05
PTPRF-216ENST00000617451 RC3H1Q5TC82 1133 aaKnown RBP34.09■■■■□ 3.05
PTPRF-216ENST00000617451 KNSTRNQ9Y448 316 aa34.09■■■■□ 3.05
PTPRF-216ENST00000617451 ATP10DQ9P241 1426 aa34.08■■■■□ 3.05
PTPRF-216ENST00000617451 MMP10P09238 476 aa34.08■■■■□ 3.05
PTPRF-216ENST00000617451 MTHFSP49914 203 aa34.07■■■■□ 3.04
PTPRF-216ENST00000617451 SULT6B1Q6IMI4 303 aa34.06■■■■□ 3.04
PTPRF-216ENST00000617451 WWC3Q9ULE0 1092 aa34.06■■■■□ 3.04
PTPRF-216ENST00000617451 CNTNAP4Q9C0A0 1308 aa34.05■■■■□ 3.04
PTPRF-216ENST00000617451 ADRA2BP18089 450 aa34.05■■■■□ 3.04
PTPRF-216ENST00000617451 C1orf141Q5JVX7 400 aa34.05■■■■□ 3.04
PTPRF-216ENST00000617451 ADCY9O60503 1353 aa34.04■■■■□ 3.04
PTPRF-216ENST00000617451 IL13P35225 146 aa34.04■■■■□ 3.04
PTPRF-216ENST00000617451 NLGN1Q8N2Q7 840 aa34.04■■■■□ 3.04
PTPRF-216ENST00000617451 ARHGEF1Q92888 912 aaKnown RBP34.04■■■■□ 3.04
PTPRF-216ENST00000617451 COL5A3P25940 1745 aaPredicted RBP34.02■■■■□ 3.04
PTPRF-216ENST00000617451 RPS6KA4O75676 772 aa34.02■■■■□ 3.04
PTPRF-216ENST00000617451 CEP350Q5VT06 3117 aa34.01■■■■□ 3.04
PTPRF-216ENST00000617451 AMER1Q5JTC6 1135 aaPredicted RBP34.01■■■■□ 3.03
PTPRF-216ENST00000617451 NFATC2IPQ8NCF5 419 aa34.01■■■■□ 3.03
PTPRF-216ENST00000617451 PTCD1O75127 700 aaKnown RBP33.99■■■■□ 3.03
PTPRF-216ENST00000617451 GYS1P13807 737 aa33.98■■■■□ 3.03
PTPRF-216ENST00000617451 RFC4P35249 363 aa33.98■■■■□ 3.03
PTPRF-216ENST00000617451 GPBP1L1Q9HC44 474 aaPredicted RBP33.98■■■■□ 3.03
PTPRF-216ENST00000617451 PXDNLA1KZ92 1463 aa33.97■■■■□ 3.03
PTPRF-216ENST00000617451 KIF13BQ9NQT8 1826 aa33.97■■■■□ 3.03
PTPRF-216ENST00000617451 CICQ96RK0 1608 aaPredicted RBP33.97■■■■□ 3.03
PTPRF-216ENST00000617451 MYH14Q7Z406 1995 aaKnown RBP33.96■■■■□ 3.03
PTPRF-216ENST00000617451 TGFB2P61812 414 aa33.96■■■■□ 3.03
PTPRF-216ENST00000617451 KIF7Q2M1P5 1343 aa33.94■■■■□ 3.02
PTPRF-216ENST00000617451 C10orf71Q711Q0 1435 aa33.94■■■■□ 3.02
PTPRF-216ENST00000617451 CRKLP46109 303 aaKnown RBP33.93■■■■□ 3.02
PTPRF-216ENST00000617451 CCDC87Q9NVE4 849 aa33.92■■■■□ 3.02
PTPRF-216ENST00000617451 KIAA1551Q9HCM1 1747 aa33.92■■■■□ 3.02
PTPRF-216ENST00000617451 A0A0G2JLW4 131 aa33.91■■■■□ 3.02
PTPRF-216ENST00000617451 AKAP4Q5JQC9 854 aa33.91■■■■□ 3.02
PTPRF-216ENST00000617451 ZNF526Q8TF50 670 aaPredicted RBP33.91■■■■□ 3.02
PTPRF-216ENST00000617451 PARP3Q9Y6F1 533 aa33.9■■■■□ 3.02
PTPRF-216ENST00000617451 C4AP0C0L4 1744 aa33.9■■■■□ 3.02
PTPRF-216ENST00000617451 SCN11AQ9UI33 1791 aa33.89■■■■□ 3.02
PTPRF-216ENST00000617451 N4BP2Q86UW6 1770 aaPredicted RBP33.88■■■■□ 3.01
PTPRF-216ENST00000617451 BCS1LQ9Y276 419 aa33.87■■■■□ 3.01
PTPRF-216ENST00000617451 PER1O15534 1290 aaPredicted RBP33.86■■■■□ 3.01
PTPRF-216ENST00000617451 SLC52A2Q9HAB3 445 aa33.86■■■■□ 3.01
PTPRF-216ENST00000617451 LGR6Q9HBX8 967 aa33.86■■■■□ 3.01
PTPRF-216ENST00000617451 TJP1Q07157 1748 aa33.86■■■■□ 3.01
PTPRF-216ENST00000617451 DPEP1P16444 411 aa33.85■■■■□ 3.01
PTPRF-216ENST00000617451 INTS5Q6P9B9 1019 aaKnown RBP33.85■■■■□ 3.01
PTPRF-216ENST00000617451 SRP68Q9UHB9 627 aaKnown RBP33.85■■■■□ 3.01
PTPRF-216ENST00000617451 HMOX1P09601 288 aa33.84■■■■□ 3.01
PTPRF-216ENST00000617451 USP42Q9H9J4 1324 aaKnown RBP33.83■■■■□ 3.01
PTPRF-216ENST00000617451 FKBP8Q14318 412 aa33.82■■■■□ 3
PTPRF-216ENST00000617451 RNMTO43148 476 aaKnown RBP33.81■■■■□ 3
PTPRF-216ENST00000617451 KCNA3P22001 575 aa33.8■■■■□ 3
PTPRF-216ENST00000617451 DNAJC10Q8IXB1 793 aa33.8■■■■□ 3
PTPRF-216ENST00000617451 MRC1P22897 1456 aa33.79■■■■□ 3
PTPRF-216ENST00000617451 DIAPH1O60610 1272 aaKnown RBP33.78■■■■□ 3
PTPRF-216ENST00000617451 FCHSD2O94868 740 aa33.78■■■■□ 3
PTPRF-216ENST00000617451 DDR1Q08345 913 aa33.78■■■■□ 3
PTPRF-216ENST00000617451 CC2D1BQ5T0F9 858 aaKnown RBP33.78■■■■□ 3
PTPRF-216ENST00000617451 ARHGAP27Q6ZUM4 889 aa33.78■■■■□ 3
PTPRF-216ENST00000617451 MTHFSDQ2M296 383 aaKnown RBP33.77■■■■□ 3
PTPRF-216ENST00000617451 BRCA1P38398 1863 aaKnown RBP33.76■■■■□ 3
PTPRF-216ENST00000617451 KIF3CO14782 793 aa33.76■■■□□ 2.99
PTPRF-216ENST00000617451 SLC39A6Q13433 755 aa33.76■■■□□ 2.99
PTPRF-216ENST00000617451 ADAMTS7Q9UKP4 1686 aa33.75■■■□□ 2.99
PTPRF-216ENST00000617451 CYP19A1P11511 503 aaPredicted RBP33.74■■■□□ 2.99
PTPRF-216ENST00000617451 HSPA6P17066 643 aa33.74■■■□□ 2.99
PTPRF-216ENST00000617451 TM4SF1P30408 202 aa33.74■■■□□ 2.99
PTPRF-216ENST00000617451 SOS1Q07889 1333 aaPredicted RBP33.74■■■□□ 2.99
PTPRF-216ENST00000617451 PIM2Q9P1W9 311 aa33.73■■■□□ 2.99
PTPRF-216ENST00000617451 POLRMTO00411 1230 aaKnown RBP33.72■■■□□ 2.99
PTPRF-216ENST00000617451 ZPR1O75312 459 aa33.72■■■□□ 2.99
PTPRF-216ENST00000617451 KCPQ6ZWJ8 1503 aa33.72■■■□□ 2.99
PTPRF-216ENST00000617451 USPL1Q5W0Q7 1092 aa33.71■■■□□ 2.99
PTPRF-216ENST00000617451 VSIG10Q8N0Z9 540 aa33.69■■■□□ 2.98
PTPRF-216ENST00000617451 VIRMAQ69YN4 1812 aaKnown RBP33.69■■■□□ 2.98
PTPRF-216ENST00000617451 NPC1L1Q9UHC9 1359 aa33.69■■■□□ 2.98
PTPRF-216ENST00000617451 DALRD3Q5D0E6 543 aaKnown RBP33.68■■■□□ 2.98
PTPRF-216ENST00000617451 NARFQ9UHQ1 456 aa33.67■■■□□ 2.98
PTPRF-216ENST00000617451 ZBTB1Q9Y2K1 713 aa33.67■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms