RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.89□□□□□ -0.83
NEK3-207ENST00000617054 BTBD11A6QL63 1104 aa9.89□□□□□ -0.83
NEK3-207ENST00000617054 ZBTB7BO15156 539 aaPredicted RBP9.89□□□□□ -0.83
NEK3-207ENST00000617054 SOS2Q07890 1332 aaPredicted RBP9.89□□□□□ -0.83
NEK3-207ENST00000617054 SLC39A6Q13433 755 aa9.88□□□□□ -0.83
NEK3-207ENST00000617054 AKAP4Q5JQC9 854 aa9.88□□□□□ -0.83
NEK3-207ENST00000617054 HTATSF1O43719 755 aaKnown RBP9.88□□□□□ -0.83
NEK3-207ENST00000617054 MS4A1P11836 297 aa9.88□□□□□ -0.83
NEK3-207ENST00000617054 RNMTO43148 476 aaKnown RBP9.88□□□□□ -0.83
NEK3-207ENST00000617054 PIP4K2BP78356 416 aa9.88□□□□□ -0.83
NEK3-207ENST00000617054 TOM1L2Q6ZVM7 507 aa9.88□□□□□ -0.83
NEK3-207ENST00000617054 PHAXQ9H814 394 aaKnown RBP9.88□□□□□ -0.83
NEK3-207ENST00000617054 PDZRN3Q9UPQ7 1066 aa9.88□□□□□ -0.83
NEK3-207ENST00000617054 DCAF8L1A6NGE4 600 aa9.87□□□□□ -0.83
NEK3-207ENST00000617054 BRPF1P55201 1214 aaPredicted RBP9.87□□□□□ -0.83
NEK3-207ENST00000617054 NFATC2IPQ8NCF5 419 aa9.87□□□□□ -0.83
NEK3-207ENST00000617054 RWDD1Q9H446 243 aaPredicted RBP9.87□□□□□ -0.83
NEK3-207ENST00000617054 AMOTQ4VCS5 1084 aa9.87□□□□□ -0.83
NEK3-207ENST00000617054 TATP17735 454 aaPredicted RBP9.86□□□□□ -0.83
NEK3-207ENST00000617054 LARP1Q6PKG0 1096 aaKnown RBP9.86□□□□□ -0.83
NEK3-207ENST00000617054 ARHGAP45Q92619 1136 aa9.86□□□□□ -0.83
NEK3-207ENST00000617054 EIF4A1P60842 406 aaKnown RBP9.86□□□□□ -0.83
NEK3-207ENST00000617054 FKBP5Q13451 457 aaPredicted RBP9.86□□□□□ -0.83
NEK3-207ENST00000617054 HDGFL1Q5TGJ6 251 aa9.86□□□□□ -0.83
NEK3-207ENST00000617054 BACH2Q9BYV9 841 aa9.86□□□□□ -0.83
NEK3-207ENST00000617054 ABCC4O15439 1325 aa9.86□□□□□ -0.83
NEK3-207ENST00000617054 CEMIPQ8WUJ3 1361 aa9.86□□□□□ -0.83
NEK3-207ENST00000617054 CYP27B1O15528 508 aa9.85□□□□□ -0.83
NEK3-207ENST00000617054 HOXD11P31277 338 aaPredicted RBP9.85□□□□□ -0.83
NEK3-207ENST00000617054 EVA1CP58658 441 aa9.85□□□□□ -0.83
NEK3-207ENST00000617054 SIRT2Q8IXJ6 389 aa9.85□□□□□ -0.83
NEK3-207ENST00000617054 STK31Q9BXU1 1019 aa9.85□□□□□ -0.83
NEK3-207ENST00000617054 MEGF6O75095 1541 aa9.85□□□□□ -0.83
NEK3-207ENST00000617054 PIP4K2AP48426 406 aaPredicted RBP9.85□□□□□ -0.83
NEK3-207ENST00000617054 DDX54Q8TDD1 881 aaKnown RBP9.85□□□□□ -0.83
NEK3-207ENST00000617054 BBXQ8WY36 941 aaPredicted RBP9.85□□□□□ -0.83
NEK3-207ENST00000617054 MEIS3Q99687 375 aa9.85□□□□□ -0.83
NEK3-207ENST00000617054 API5Q9BZZ5 524 aaKnown RBP9.85□□□□□ -0.83
NEK3-207ENST00000617054 PHRF1Q9P1Y6 1649 aaKnown RBP9.85□□□□□ -0.83
NEK3-207ENST00000617054 APBB1O00213 710 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 MSH5O43196 834 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 FLIIQ13045 1269 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 CCDC30Q5VVM6 783 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 CHPF2Q9P2E5 772 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 PHKG2P15735 406 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 BTG4Q9NY30 223 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 CAMTA1Q9Y6Y1 1673 aa9.84□□□□□ -0.83
NEK3-207ENST00000617054 SPRYD3Q8NCJ5 442 aa9.83□□□□□ -0.84
NEK3-207ENST00000617054 LNPKQ9C0E8 428 aa9.83□□□□□ -0.84
NEK3-207ENST00000617054 RGS12O14924 1447 aa9.83□□□□□ -0.84
NEK3-207ENST00000617054 ADAMTS2O95450 1211 aa9.83□□□□□ -0.84
NEK3-207ENST00000617054 PROSER3Q2NL68 480 aa9.83□□□□□ -0.84
NEK3-207ENST00000617054 COL18A1P39060 1754 aa9.83□□□□□ -0.84
NEK3-207ENST00000617054 C8orf34Q49A92 452 aa9.82□□□□□ -0.84
NEK3-207ENST00000617054 SPG7Q9UQ90 795 aa9.82□□□□□ -0.84
NEK3-207ENST00000617054 NUTM2BA6NNL0 878 aaPredicted RBP9.82□□□□□ -0.84
NEK3-207ENST00000617054 NUTM2EB1AL46 878 aaPredicted RBP9.82□□□□□ -0.84
NEK3-207ENST00000617054 ANKRD45Q5TZF3 282 aa9.82□□□□□ -0.84
NEK3-207ENST00000617054 NUTM2AQ8IVF1 878 aaPredicted RBP9.82□□□□□ -0.84
NEK3-207ENST00000617054 SEC24BO95487 1268 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 AIMP1Q12904 312 aaKnown RBP9.81□□□□□ -0.84
NEK3-207ENST00000617054 HDAC1Q13547 482 aaPredicted RBP9.81□□□□□ -0.84
NEK3-207ENST00000617054 INTS3Q68E01 1043 aaKnown RBP9.81□□□□□ -0.84
NEK3-207ENST00000617054 IFNL2Q8IZJ0 200 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 CPDO75976 1380 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 WDR17Q8IZU2 1322 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 PTPRCP08575 1304 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 AAMPQ13685 434 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 SLC52A2Q9HAB3 445 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 NCAPD2Q15021 1401 aa9.81□□□□□ -0.84
NEK3-207ENST00000617054 GIGYF1O75420 1035 aaPredicted RBP9.8□□□□□ -0.84
NEK3-207ENST00000617054 MYL6BP14649 208 aa9.8□□□□□ -0.84
NEK3-207ENST00000617054 ZNF790Q6PG37 636 aa9.8□□□□□ -0.84
NEK3-207ENST00000617054 LRRC37A3O60309 1634 aa9.8□□□□□ -0.84
NEK3-207ENST00000617054 KDM6AO15550 1401 aaPredicted RBP9.8□□□□□ -0.84
NEK3-207ENST00000617054 KAT6BQ8WYB5 2073 aa9.8□□□□□ -0.84
NEK3-207ENST00000617054 PI4KAP2A4QPH2 592 aa9.8□□□□□ -0.84
NEK3-207ENST00000617054 PI4KAP1Q8N8J0 262 aa9.8□□□□□ -0.84
NEK3-207ENST00000617054 FAM161AQ3B820 660 aa9.8□□□□□ -0.84
NEK3-207ENST00000617054 ZCRB1Q8TBF4 217 aaKnown RBP9.8□□□□□ -0.84
NEK3-207ENST00000617054 ZNF496Q96IT1 587 aaPredicted RBP9.8□□□□□ -0.84
NEK3-207ENST00000617054 CRYBG1Q9Y4K1 1723 aa9.79□□□□□ -0.84
NEK3-207ENST00000617054 SMC5Q8IY18 1101 aa9.79□□□□□ -0.84
NEK3-207ENST00000617054 FBXO3Q9UK99 471 aa9.79□□□□□ -0.84
NEK3-207ENST00000617054 USP16Q9Y5T5 823 aa9.79□□□□□ -0.84
NEK3-207ENST00000617054 COL5A2P05997 1499 aaPredicted RBP9.79□□□□□ -0.84
NEK3-207ENST00000617054 CABP4P57796 275 aa9.79□□□□□ -0.84
NEK3-207ENST00000617054 C16orf71Q8IYS4 520 aaPredicted RBP9.79□□□□□ -0.84
NEK3-207ENST00000617054 FAM208AQ9UK61 1670 aaKnown RBP9.79□□□□□ -0.84
NEK3-207ENST00000617054 SMARCA5O60264 1052 aaPredicted RBP9.78□□□□□ -0.84
NEK3-207ENST00000617054 PTCD1O75127 700 aaKnown RBP9.78□□□□□ -0.84
NEK3-207ENST00000617054 IL2RBP14784 551 aa9.78□□□□□ -0.84
NEK3-207ENST00000617054 BABAM1Q9NWV8 329 aa9.78□□□□□ -0.84
NEK3-207ENST00000617054 ROBO1Q9Y6N7 1651 aa9.78□□□□□ -0.84
NEK3-207ENST00000617054 VIRMAQ69YN4 1812 aaKnown RBP9.78□□□□□ -0.84
NEK3-207ENST00000617054 LMO7Q8WWI1 1683 aa9.78□□□□□ -0.84
NEK3-207ENST00000617054 CEP85Q6P2H3 762 aa9.78□□□□□ -0.84
NEK3-207ENST00000617054 DCAF5Q96JK2 942 aa9.78□□□□□ -0.84
NEK3-207ENST00000617054 NUCB1Q02818 461 aa9.77□□□□□ -0.85
NEK3-207ENST00000617054 CHD1LQ86WJ1 897 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms