RNA–Protein interactions for RNA: ENST00000613988.4

CBWD1-223, Transcript of COBW domain containing 1, human

TSL 2

Gene CBWD1, Length 1,381 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBWD1-223	ENST00000613988	IL13	P35225	146 aa		29.52	■■■□□ 2.32
CBWD1-223	ENST00000613988	NLGN2	Q8NFZ4	835 aa		29.52	■■■□□ 2.32
CBWD1-223	ENST00000613988	ITPK1	Q13572	414 aa		29.51	■■■□□ 2.31
CBWD1-223	ENST00000613988	AMIGO3	Q86WK7	504 aa		29.51	■■■□□ 2.31
CBWD1-223	ENST00000613988	PELP1	Q8IZL8	1130 aa	Known RBP	29.51	■■■□□ 2.31
CBWD1-223	ENST00000613988	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	29.5	■■■□□ 2.31
CBWD1-223	ENST00000613988	SMIM5	Q71RC9	77 aa		29.5	■■■□□ 2.31
CBWD1-223	ENST00000613988	C1orf141	Q5JVX7	400 aa		29.49	■■■□□ 2.31
CBWD1-223	ENST00000613988	UBR3	Q6ZT12	1888 aa		29.48	■■■□□ 2.31
CBWD1-223	ENST00000613988	PER1	O15534	1290 aa	Predicted RBP	29.48	■■■□□ 2.31
CBWD1-223	ENST00000613988	SSFA2	P28290	1259 aa		29.48	■■■□□ 2.31
CBWD1-223	ENST00000613988	MTHFS	P49914	203 aa		29.48	■■■□□ 2.31
CBWD1-223	ENST00000613988	CABP4	P57796	275 aa		29.48	■■■□□ 2.31
CBWD1-223	ENST00000613988	GOLGB1	Q14789	3259 aa	Known RBP	29.48	■■■□□ 2.31
CBWD1-223	ENST00000613988	CHD4	Q14839	1912 aa		29.47	■■■□□ 2.31
CBWD1-223	ENST00000613988	GNPAT	O15228	680 aa		29.46	■■■□□ 2.31
CBWD1-223	ENST00000613988	CC2D1B	Q5T0F9	858 aa	Known RBP	29.46	■■■□□ 2.31
CBWD1-223	ENST00000613988	RBM42	Q9BTD8	480 aa	Known RBP	29.46	■■■□□ 2.31
CBWD1-223	ENST00000613988	KDR	P35968	1356 aa		29.45	■■■□□ 2.3
CBWD1-223	ENST00000613988	KDM6A	O15550	1401 aa	Predicted RBP	29.44	■■■□□ 2.3
CBWD1-223	ENST00000613988	ZNF784	Q8NCA9	323 aa	Predicted RBP	29.42	■■■□□ 2.3
CBWD1-223	ENST00000613988	CD2AP	Q9Y5K6	639 aa		29.42	■■■□□ 2.3
CBWD1-223	ENST00000613988	SLC4A9	Q96Q91	983 aa		29.41	■■■□□ 2.3
CBWD1-223	ENST00000613988	NFATC2IP	Q8NCF5	419 aa		29.39	■■■□□ 2.3
CBWD1-223	ENST00000613988	CNGB1	Q14028	1251 aa	Predicted RBP	29.38	■■■□□ 2.29
CBWD1-223	ENST00000613988	RTCB	Q9Y3I0	505 aa	Known RBP	29.38	■■■□□ 2.29
CBWD1-223	ENST00000613988	DIAPH1	O60610	1272 aa	Known RBP	29.37	■■■□□ 2.29
CBWD1-223	ENST00000613988	HMOX1	P09601	288 aa		29.37	■■■□□ 2.29
CBWD1-223	ENST00000613988	TRAPPC3L	Q5T215	181 aa		29.37	■■■□□ 2.29
CBWD1-223	ENST00000613988	GRIN3B	O60391	1043 aa		29.36	■■■□□ 2.29
CBWD1-223	ENST00000613988	YBX3	P16989	372 aa	Known RBP eCLIP	29.36	■■■□□ 2.29
CBWD1-223	ENST00000613988	AKAP4	Q5JQC9	854 aa		29.36	■■■□□ 2.29
CBWD1-223	ENST00000613988	ZNF831	Q5JPB2	1677 aa		29.36	■■■□□ 2.29
CBWD1-223	ENST00000613988	PTCD1	O75127	700 aa	Known RBP	29.35	■■■□□ 2.29
CBWD1-223	ENST00000613988	RC3H1	Q5TC82	1133 aa	Known RBP	29.35	■■■□□ 2.29
CBWD1-223	ENST00000613988	CNTNAP4	Q9C0A0	1308 aa		29.32	■■■□□ 2.28
CBWD1-223	ENST00000613988	NPC1L1	Q9UHC9	1359 aa		29.32	■■■□□ 2.28
CBWD1-223	ENST00000613988	SCN11A	Q9UI33	1791 aa		29.31	■■■□□ 2.28
CBWD1-223	ENST00000613988	ADRA2B	P18089	450 aa		29.3	■■■□□ 2.28
CBWD1-223	ENST00000613988	COL5A3	P25940	1745 aa	Predicted RBP	29.3	■■■□□ 2.28
CBWD1-223	ENST00000613988	RPS6KA4	O75676	772 aa		29.29	■■■□□ 2.28
CBWD1-223	ENST00000613988	DIEXF	Q68CQ4	756 aa	Known RBP	29.29	■■■□□ 2.28
CBWD1-223	ENST00000613988	ARHGEF1	Q92888	912 aa	Known RBP	29.29	■■■□□ 2.28
CBWD1-223	ENST00000613988	LGR6	Q9HBX8	967 aa		29.29	■■■□□ 2.28
CBWD1-223	ENST00000613988	MMP10	P09238	476 aa		29.28	■■■□□ 2.28
CBWD1-223	ENST00000613988	NLGN1	Q8N2Q7	840 aa		29.28	■■■□□ 2.28
CBWD1-223	ENST00000613988	RFC4	P35249	363 aa		29.27	■■■□□ 2.28
CBWD1-223	ENST00000613988	MTHFSD	Q2M296	383 aa	Known RBP	29.27	■■■□□ 2.28
CBWD1-223	ENST00000613988	SLC52A2	Q9HAB3	445 aa		29.27	■■■□□ 2.28
CBWD1-223	ENST00000613988	RNMT	O43148	476 aa	Known RBP	29.26	■■■□□ 2.27
CBWD1-223	ENST00000613988	MYH14	Q7Z406	1995 aa	Known RBP	29.25	■■■□□ 2.27
CBWD1-223	ENST00000613988	CRKL	P46109	303 aa	Known RBP	29.25	■■■□□ 2.27
CBWD1-223	ENST00000613988	U2SURP	O15042	1029 aa	Known RBP	29.24	■■■□□ 2.27
CBWD1-223	ENST00000613988	GYS1	P13807	737 aa		29.22	■■■□□ 2.27
CBWD1-223	ENST00000613988	WWC3	Q9ULE0	1092 aa		29.21	■■■□□ 2.27
CBWD1-223	ENST00000613988	COL3A1	P02461	1466 aa	Predicted RBP	29.2	■■■□□ 2.27
CBWD1-223	ENST00000613988	SLC39A6	Q13433	755 aa		29.2	■■■□□ 2.26
CBWD1-223	ENST00000613988	VIRMA	Q69YN4	1812 aa	Known RBP	29.19	■■■□□ 2.26
CBWD1-223	ENST00000613988	TJP1	Q07157	1748 aa		29.19	■■■□□ 2.26
CBWD1-223	ENST00000613988	DNAJC10	Q8IXB1	793 aa		29.18	■■■□□ 2.26
CBWD1-223	ENST00000613988	MRC1	P22897	1456 aa		29.18	■■■□□ 2.26
CBWD1-223	ENST00000613988	INTS5	Q6P9B9	1019 aa	Known RBP	29.17	■■■□□ 2.26
CBWD1-223	ENST00000613988	PARP3	Q9Y6F1	533 aa		29.17	■■■□□ 2.26
CBWD1-223	ENST00000613988	CIC	Q96RK0	1608 aa	Predicted RBP	29.16	■■■□□ 2.26
CBWD1-223	ENST00000613988	C4A	P0C0L4	1744 aa		29.16	■■■□□ 2.26
CBWD1-223	ENST00000613988	CFAP53	Q96M91	514 aa		29.15	■■■□□ 2.26
CBWD1-223	ENST00000613988	CCDC87	Q9NVE4	849 aa		29.15	■■■□□ 2.26
CBWD1-223	ENST00000613988	TGFB2	P61812	414 aa		29.14	■■■□□ 2.26
CBWD1-223	ENST00000613988	SRP68	Q9UHB9	627 aa	Known RBP	29.14	■■■□□ 2.26
CBWD1-223	ENST00000613988	GAS2L2	Q8NHY3	880 aa		29.13	■■■□□ 2.25
CBWD1-223	ENST00000613988	ADAMTS7	Q9UKP4	1686 aa		29.13	■■■□□ 2.25
CBWD1-223	ENST00000613988	USP42	Q9H9J4	1324 aa	Known RBP	29.12	■■■□□ 2.25
CBWD1-223	ENST00000613988	KIF13B	Q9NQT8	1826 aa		29.12	■■■□□ 2.25
CBWD1-223	ENST00000613988	GNAT3	A8MTJ3	354 aa		29.12	■■■□□ 2.25
CBWD1-223	ENST00000613988	CYP19A1	P11511	503 aa	Predicted RBP	29.12	■■■□□ 2.25
CBWD1-223	ENST00000613988	FKBP8	Q14318	412 aa		29.11	■■■□□ 2.25
CBWD1-223	ENST00000613988	PXDNL	A1KZ92	1463 aa		29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988		A0A0G2JLW4	131 aa		29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988	GIGYF1	O75420	1035 aa	Predicted RBP	29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988	C1QTNF8	P60827	252 aa		29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988	TTC5	Q8N0Z6	440 aa		29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988	VSIG10	Q8N0Z9	540 aa		29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988	C10orf71	Q711Q0	1435 aa		29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988	KCP	Q6ZWJ8	1503 aa		29.1	■■■□□ 2.25
CBWD1-223	ENST00000613988	ZPR1	O75312	459 aa		29.09	■■■□□ 2.25
CBWD1-223	ENST00000613988	TEF	Q10587	303 aa		29.09	■■■□□ 2.25
CBWD1-223	ENST00000613988	IL17RE	Q8NFR9	667 aa		29.09	■■■□□ 2.25
CBWD1-223	ENST00000613988	NUDC	Q9Y266	331 aa		29.09	■■■□□ 2.25
CBWD1-223	ENST00000613988	N4BP2	Q86UW6	1770 aa	Predicted RBP	29.07	■■■□□ 2.24
CBWD1-223	ENST00000613988	SOS1	Q07889	1333 aa	Predicted RBP	29.07	■■■□□ 2.24
CBWD1-223	ENST00000613988	PPP2R1A	P30153	589 aa		29.07	■■■□□ 2.24
CBWD1-223	ENST00000613988	PRKAR2B	P31323	418 aa		29.06	■■■□□ 2.24
CBWD1-223	ENST00000613988	USPL1	Q5W0Q7	1092 aa		29.06	■■■□□ 2.24
CBWD1-223	ENST00000613988	ATP10D	Q9P241	1426 aa		29.05	■■■□□ 2.24
CBWD1-223	ENST00000613988	DPEP1	P16444	411 aa		29.05	■■■□□ 2.24
CBWD1-223	ENST00000613988	PHACTR3	Q96KR7	559 aa		29.05	■■■□□ 2.24
CBWD1-223	ENST00000613988	RSPH6A	Q9H0K4	717 aa		29.05	■■■□□ 2.24
CBWD1-223	ENST00000613988	BCS1L	Q9Y276	419 aa		29.05	■■■□□ 2.24
CBWD1-223	ENST00000613988	KIAA1551	Q9HCM1	1747 aa		29.05	■■■□□ 2.24
CBWD1-223	ENST00000613988	DDR1	Q08345	913 aa		29.04	■■■□□ 2.24

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms