RNA–Protein interactions for RNA: ENST00000606394.5

CTSA-212, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-212ENST00000606394 PLEKHG2Q9H7P9 1386 aa18.6■□□□□ 0.57
CTSA-212ENST00000606394 ITPK1Q13572 414 aa18.6■□□□□ 0.57
CTSA-212ENST00000606394 KIAA1551Q9HCM1 1747 aa18.6■□□□□ 0.57
CTSA-212ENST00000606394 C10orf71Q711Q0 1435 aa18.59■□□□□ 0.57
CTSA-212ENST00000606394 PCNTO95613 3336 aa18.59■□□□□ 0.57
CTSA-212ENST00000606394 ADRA2BP18089 450 aa18.59■□□□□ 0.57
CTSA-212ENST00000606394 CDCA8Q53HL2 280 aa18.59■□□□□ 0.57
CTSA-212ENST00000606394 RBM46Q8TBY0 533 aaKnown RBP18.59■□□□□ 0.57
CTSA-212ENST00000606394 ASAP1Q9ULH1 1129 aa18.59■□□□□ 0.57
CTSA-212ENST00000606394 BCS1LQ9Y276 419 aa18.59■□□□□ 0.57
CTSA-212ENST00000606394 TRAPPC3LQ5T215 181 aa18.58■□□□□ 0.56
CTSA-212ENST00000606394 IFNL2Q8IZJ0 200 aa18.58■□□□□ 0.56
CTSA-212ENST00000606394 RTCBQ9Y3I0 505 aaKnown RBP18.58■□□□□ 0.56
CTSA-212ENST00000606394 ZNF831Q5JPB2 1677 aa18.57■□□□□ 0.56
CTSA-212ENST00000606394 ARHGAP27Q6ZUM4 889 aa18.57■□□□□ 0.56
CTSA-212ENST00000606394 CCER1Q8TC90 406 aaPredicted RBP18.57■□□□□ 0.56
CTSA-212ENST00000606394 CCDC87Q9NVE4 849 aa18.57■□□□□ 0.56
CTSA-212ENST00000606394 EMILIN1Q9Y6C2 1016 aa18.57■□□□□ 0.56
CTSA-212ENST00000606394 WASHC2AQ641Q2 1341 aa18.56■□□□□ 0.56
CTSA-212ENST00000606394 N4BP2Q86UW6 1770 aaPredicted RBP18.56■□□□□ 0.56
CTSA-212ENST00000606394 A0A0G2JLW4 131 aa18.56■□□□□ 0.56
CTSA-212ENST00000606394 PHKG2P15735 406 aa18.56■□□□□ 0.56
CTSA-212ENST00000606394 RC3H1Q5TC82 1133 aaKnown RBP18.56■□□□□ 0.56
CTSA-212ENST00000606394 ATG3Q9NT62 314 aa18.56■□□□□ 0.56
CTSA-212ENST00000606394 WDR90Q96KV7 1748 aa18.55■□□□□ 0.56
CTSA-212ENST00000606394 ANKRD26Q9UPS8 1709 aa18.55■□□□□ 0.56
CTSA-212ENST00000606394 FSTL1Q12841 308 aa18.55■□□□□ 0.56
CTSA-212ENST00000606394 NMRK2Q9NPI5 230 aa18.55■□□□□ 0.56
CTSA-212ENST00000606394 KDRP35968 1356 aa18.55■□□□□ 0.56
CTSA-212ENST00000606394 FCHSD2O94868 740 aa18.54■□□□□ 0.56
CTSA-212ENST00000606394 C16orf71Q8IYS4 520 aaPredicted RBP18.54■□□□□ 0.56
CTSA-212ENST00000606394 JMYQ8N9B5 988 aa18.54■□□□□ 0.56
CTSA-212ENST00000606394 KLRG1Q96E93 195 aa18.54■□□□□ 0.56
CTSA-212ENST00000606394 BRCA1P38398 1863 aaKnown RBP18.54■□□□□ 0.56
CTSA-212ENST00000606394 C4AP0C0L4 1744 aa18.53■□□□□ 0.56
CTSA-212ENST00000606394 DPEP1P16444 411 aa18.53■□□□□ 0.56
CTSA-212ENST00000606394 EYA1Q99502 592 aa18.53■□□□□ 0.56
CTSA-212ENST00000606394 CNTNAP4Q9C0A0 1308 aa18.52■□□□□ 0.56
CTSA-212ENST00000606394 ARFGEF1Q9Y6D6 1849 aa18.52■□□□□ 0.56
CTSA-212ENST00000606394 ERVV-2B6SEH9 535 aa18.52■□□□□ 0.56
CTSA-212ENST00000606394 PPM1GO15355 546 aaPredicted RBP18.52■□□□□ 0.56
CTSA-212ENST00000606394 ARHGEF1Q92888 912 aaKnown RBP18.52■□□□□ 0.56
CTSA-212ENST00000606394 PARP3Q9Y6F1 533 aa18.52■□□□□ 0.56
CTSA-212ENST00000606394 KDM2BQ8NHM5 1336 aa18.51■□□□□ 0.55
CTSA-212ENST00000606394 GYS1P13807 737 aa18.51■□□□□ 0.55
CTSA-212ENST00000606394 RFC4P35249 363 aa18.51■□□□□ 0.55
CTSA-212ENST00000606394 C9orf131Q5VYM1 1079 aa18.51■□□□□ 0.55
CTSA-212ENST00000606394 CARD14Q9BXL6 1004 aa18.51■□□□□ 0.55
CTSA-212ENST00000606394 RPS6KA4O75676 772 aa18.5■□□□□ 0.55
CTSA-212ENST00000606394 HSP90AB1P08238 724 aaKnown RBP18.5■□□□□ 0.55
CTSA-212ENST00000606394 PIM2Q9P1W9 311 aa18.5■□□□□ 0.55
CTSA-212ENST00000606394 KCNA3P22001 575 aa18.49■□□□□ 0.55
CTSA-212ENST00000606394 SLC4A9Q96Q91 983 aa18.49■□□□□ 0.55
CTSA-212ENST00000606394 COL5A3P25940 1745 aaPredicted RBP18.49■□□□□ 0.55
CTSA-212ENST00000606394 DCAF5Q96JK2 942 aa18.48■□□□□ 0.55
CTSA-212ENST00000606394 DALRD3Q5D0E6 543 aaKnown RBP18.47■□□□□ 0.55
CTSA-212ENST00000606394 COL13A1Q5TAT6 717 aaPredicted RBP18.47■□□□□ 0.55
CTSA-212ENST00000606394 RBM42Q9BTD8 480 aaKnown RBP18.47■□□□□ 0.55
CTSA-212ENST00000606394 POLKQ9UBT6 870 aa18.46■□□□□ 0.55
CTSA-212ENST00000606394 ZC3H4Q9UPT8 1303 aaKnown RBP18.46■□□□□ 0.55
CTSA-212ENST00000606394 TNRC6CQ9HCJ0 1690 aaKnown RBP18.44■□□□□ 0.54
CTSA-212ENST00000606394 KCPQ6ZWJ8 1503 aa18.44■□□□□ 0.54
CTSA-212ENST00000606394 SMC1BQ8NDV3 1235 aa18.44■□□□□ 0.54
CTSA-212ENST00000606394 RNF181Q9P0P0 153 aa18.44■□□□□ 0.54
CTSA-212ENST00000606394 MYH14Q7Z406 1995 aaKnown RBP18.43■□□□□ 0.54
CTSA-212ENST00000606394 HTRA3P83110 453 aa18.43■□□□□ 0.54
CTSA-212ENST00000606394 EIF4A2Q14240 407 aaKnown RBP18.43■□□□□ 0.54
CTSA-212ENST00000606394 PLEKHO1Q53GL0 409 aaPredicted RBP18.42■□□□□ 0.54
CTSA-212ENST00000606394 USP42Q9H9J4 1324 aaKnown RBP18.42■□□□□ 0.54
CTSA-212ENST00000606394 CABP4P57796 275 aa18.41■□□□□ 0.54
CTSA-212ENST00000606394 AMOTQ4VCS5 1084 aa18.41■□□□□ 0.54
CTSA-212ENST00000606394 TNS4Q8IZW8 715 aa18.41■□□□□ 0.54
CTSA-212ENST00000606394 RRAGCQ9HB90 399 aa18.41■□□□□ 0.54
CTSA-212ENST00000606394 SBF1O95248 1867 aa18.4■□□□□ 0.54
CTSA-212ENST00000606394 CRKLP46109 303 aaKnown RBP18.4■□□□□ 0.54
CTSA-212ENST00000606394 PRELPP51888 382 aa18.4■□□□□ 0.54
CTSA-212ENST00000606394 DDR1Q08345 913 aa18.39■□□□□ 0.53
CTSA-212ENST00000606394 FKBP8Q14318 412 aa18.39■□□□□ 0.53
CTSA-212ENST00000606394 KDM6AO15550 1401 aaPredicted RBP18.39■□□□□ 0.53
CTSA-212ENST00000606394 ZNF530Q6P9A1 599 aaPredicted RBP18.37■□□□□ 0.53
CTSA-212ENST00000606394 POLRMTO00411 1230 aaKnown RBP18.36■□□□□ 0.53
CTSA-212ENST00000606394 PTCD1O75127 700 aaKnown RBP18.36■□□□□ 0.53
CTSA-212ENST00000606394 TM4SF1P30408 202 aa18.36■□□□□ 0.53
CTSA-212ENST00000606394 CHRNA5P30532 468 aa18.36■□□□□ 0.53
CTSA-212ENST00000606394 MTHFSP49914 203 aa18.36■□□□□ 0.53
CTSA-212ENST00000606394 SRP68Q9UHB9 627 aaKnown RBP18.36■□□□□ 0.53
CTSA-212ENST00000606394 VEGFAP15692 232 aaPredicted RBP18.35■□□□□ 0.53
CTSA-212ENST00000606394 LMNB1P20700 586 aa18.35■□□□□ 0.53
CTSA-212ENST00000606394 C1orf141Q5JVX7 400 aa18.35■□□□□ 0.53
CTSA-212ENST00000606394 GLTPD2A6NH11 291 aa18.34■□□□□ 0.53
CTSA-212ENST00000606394 ZPR1O75312 459 aa18.34■□□□□ 0.53
CTSA-212ENST00000606394 NFATC2IPQ8NCF5 419 aa18.34■□□□□ 0.53
CTSA-212ENST00000606394 CAPN15O75808 1086 aa18.33■□□□□ 0.52
CTSA-212ENST00000606394 INTS5Q6P9B9 1019 aaKnown RBP18.33■□□□□ 0.52
CTSA-212ENST00000606394 TJP1Q07157 1748 aa18.32■□□□□ 0.52
CTSA-212ENST00000606394 ADAMTS7Q9UKP4 1686 aa18.32■□□□□ 0.52
CTSA-212ENST00000606394 TNNT2P45379 298 aaPredicted RBP18.31■□□□□ 0.52
CTSA-212ENST00000606394 CLSPNQ9HAW4 1339 aa18.3■□□□□ 0.52
CTSA-212ENST00000606394 HSPA1AP0DMV8 641 aaKnown RBP18.3■□□□□ 0.52
CTSA-212ENST00000606394 HSPA1BP0DMV9 641 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms