RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 PLEKHO1Q53GL0 409 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-228ENST00000602239 SLC4A9Q96Q91 983 aa21.56■■□□□ 1.04
SHKBP1-228ENST00000602239 ERVV-2B6SEH9 535 aa21.55■■□□□ 1.04
SHKBP1-228ENST00000602239 GNPATO15228 680 aa21.55■■□□□ 1.04
SHKBP1-228ENST00000602239 KNSTRNQ9Y448 316 aa21.55■■□□□ 1.04
SHKBP1-228ENST00000602239 ZNF530Q6P9A1 599 aaPredicted RBP21.54■■□□□ 1.04
SHKBP1-228ENST00000602239 DCAF5Q96JK2 942 aa21.54■■□□□ 1.04
SHKBP1-228ENST00000602239 GRIN3BO60391 1043 aa21.53■■□□□ 1.04
SHKBP1-228ENST00000602239 PLEKHG2Q9H7P9 1386 aa21.52■■□□□ 1.04
SHKBP1-228ENST00000602239 AMER1Q5JTC6 1135 aaPredicted RBP21.52■■□□□ 1.04
SHKBP1-228ENST00000602239 RBM42Q9BTD8 480 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-228ENST00000602239 HSP90AB1P08238 724 aaKnown RBP21.51■■□□□ 1.03
SHKBP1-228ENST00000602239 IL13P35225 146 aa21.51■■□□□ 1.03
SHKBP1-228ENST00000602239 AMOTQ4VCS5 1084 aa21.51■■□□□ 1.03
SHKBP1-228ENST00000602239 SULT6B1Q6IMI4 303 aa21.51■■□□□ 1.03
SHKBP1-228ENST00000602239 KDM6AO15550 1401 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-228ENST00000602239 CABP4P57796 275 aa21.5■■□□□ 1.03
SHKBP1-228ENST00000602239 KIF7Q2M1P5 1343 aa21.5■■□□□ 1.03
SHKBP1-228ENST00000602239 KDRP35968 1356 aa21.49■■□□□ 1.03
SHKBP1-228ENST00000602239 MTHFSP49914 203 aa21.49■■□□□ 1.03
SHKBP1-228ENST00000602239 WWC3Q9ULE0 1092 aa21.49■■□□□ 1.03
SHKBP1-228ENST00000602239 C1QTNF8P60827 252 aa21.47■■□□□ 1.03
SHKBP1-228ENST00000602239 C1orf141Q5JVX7 400 aa21.47■■□□□ 1.03
SHKBP1-228ENST00000602239 TRAPPC3LQ5T215 181 aa21.47■■□□□ 1.03
SHKBP1-228ENST00000602239 NFATC2IPQ8NCF5 419 aa21.47■■□□□ 1.03
SHKBP1-228ENST00000602239 RTCBQ9Y3I0 505 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-228ENST00000602239 PER1O15534 1290 aaPredicted RBP21.46■■□□□ 1.03
SHKBP1-228ENST00000602239 PTCD1O75127 700 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-228ENST00000602239 ARHGEF1Q92888 912 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-228ENST00000602239 MMP10P09238 476 aa21.45■■□□□ 1.02
SHKBP1-228ENST00000602239 RC3H1Q5TC82 1133 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-228ENST00000602239 RPS6KA4O75676 772 aa21.42■■□□□ 1.02
SHKBP1-228ENST00000602239 CNTNAP4Q9C0A0 1308 aa21.42■■□□□ 1.02
SHKBP1-228ENST00000602239 LGR6Q9HBX8 967 aa21.42■■□□□ 1.02
SHKBP1-228ENST00000602239 HMOX1P09601 288 aa21.41■■□□□ 1.02
SHKBP1-228ENST00000602239 CC2D1BQ5T0F9 858 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-228ENST00000602239 ZNF831Q5JPB2 1677 aa21.4■■□□□ 1.02
SHKBP1-228ENST00000602239 MYH14Q7Z406 1995 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-228ENST00000602239 GIGYF1O75420 1035 aaPredicted RBP21.4■■□□□ 1.02
SHKBP1-228ENST00000602239 GYS1P13807 737 aa21.4■■□□□ 1.02
SHKBP1-228ENST00000602239 NLGN1Q8N2Q7 840 aa21.4■■□□□ 1.02
SHKBP1-228ENST00000602239 COL5A3P25940 1745 aaPredicted RBP21.39■■□□□ 1.01
SHKBP1-228ENST00000602239 SENP3-EIF4A1A0A087X0R7 540 aa21.39■■□□□ 1.01
SHKBP1-228ENST00000602239 ADRA2BP18089 450 aa21.39■■□□□ 1.01
SHKBP1-228ENST00000602239 RFC4P35249 363 aa21.39■■□□□ 1.01
SHKBP1-228ENST00000602239 AKAP4Q5JQC9 854 aa21.39■■□□□ 1.01
SHKBP1-228ENST00000602239 CRKLP46109 303 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-228ENST00000602239 CNGB1Q14028 1251 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-228ENST00000602239 ATP10DQ9P241 1426 aa21.37■■□□□ 1.01
SHKBP1-228ENST00000602239 A0A0G2JLW4 131 aa21.36■■□□□ 1.01
SHKBP1-228ENST00000602239 SLC52A2Q9HAB3 445 aa21.36■■□□□ 1.01
SHKBP1-228ENST00000602239 SRP68Q9UHB9 627 aaKnown RBP21.36■■□□□ 1.01
SHKBP1-228ENST00000602239 RNMTO43148 476 aaKnown RBP21.35■■□□□ 1.01
SHKBP1-228ENST00000602239 SLC39A6Q13433 755 aa21.35■■□□□ 1.01
SHKBP1-228ENST00000602239 MTHFSDQ2M296 383 aaKnown RBP21.35■■□□□ 1.01
SHKBP1-228ENST00000602239 SCN11AQ9UI33 1791 aa21.35■■□□□ 1.01
SHKBP1-228ENST00000602239 PXDNLA1KZ92 1463 aa21.34■■□□□ 1.01
SHKBP1-228ENST00000602239 CICQ96RK0 1608 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-228ENST00000602239 DIAPH1O60610 1272 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-228ENST00000602239 TGFB2P61812 414 aa21.34■■□□□ 1.01
SHKBP1-228ENST00000602239 INTS5Q6P9B9 1019 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-228ENST00000602239 DNAJC10Q8IXB1 793 aa21.33■■□□□ 1.01
SHKBP1-228ENST00000602239 ZNF526Q8TF50 670 aaPredicted RBP21.33■■□□□ 1.01
SHKBP1-228ENST00000602239 PARP3Q9Y6F1 533 aa21.33■■□□□ 1.01
SHKBP1-228ENST00000602239 FKBP8Q14318 412 aa21.32■■□□□ 1
SHKBP1-228ENST00000602239 ADCY9O60503 1353 aa21.32■■□□□ 1
SHKBP1-228ENST00000602239 N4BP2Q86UW6 1770 aaPredicted RBP21.31■■□□□ 1
SHKBP1-228ENST00000602239 DPEP1P16444 411 aa21.31■■□□□ 1
SHKBP1-228ENST00000602239 CCDC87Q9NVE4 849 aa21.31■■□□□ 1
SHKBP1-228ENST00000602239 BCS1LQ9Y276 419 aa21.31■■□□□ 1
SHKBP1-228ENST00000602239 TJP1Q07157 1748 aa21.31■■□□□ 1
SHKBP1-228ENST00000602239 KIF13BQ9NQT8 1826 aa21.31■■□□□ 1
SHKBP1-228ENST00000602239 C10orf71Q711Q0 1435 aa21.3■■□□□ 1
SHKBP1-228ENST00000602239 C4AP0C0L4 1744 aa21.3■■□□□ 1
SHKBP1-228ENST00000602239 KIAA1551Q9HCM1 1747 aa21.3■■□□□ 1
SHKBP1-228ENST00000602239 GPBP1L1Q9HC44 474 aaPredicted RBP21.3■■□□□ 1
SHKBP1-228ENST00000602239 USP42Q9H9J4 1324 aaKnown RBP21.29■■□□□ 1
SHKBP1-228ENST00000602239 KCNA3P22001 575 aa21.29■■□□□ 1
SHKBP1-228ENST00000602239 CYP19A1P11511 503 aaPredicted RBP21.28■■□□□ 1
SHKBP1-228ENST00000602239 DDR1Q08345 913 aa21.28■■□□□ 1
SHKBP1-228ENST00000602239 MRC1P22897 1456 aa21.26■□□□□ 0.99
SHKBP1-228ENST00000602239 NPC1L1Q9UHC9 1359 aa21.26■□□□□ 0.99
SHKBP1-228ENST00000602239 U2SURPO15042 1029 aaKnown RBP21.26■□□□□ 0.99
SHKBP1-228ENST00000602239 CEP350Q5VT06 3117 aa21.26■□□□□ 0.99
SHKBP1-228ENST00000602239 FCHSD2O94868 740 aa21.25■□□□□ 0.99
SHKBP1-228ENST00000602239 TM4SF1P30408 202 aa21.25■□□□□ 0.99
SHKBP1-228ENST00000602239 USPL1Q5W0Q7 1092 aa21.25■□□□□ 0.99
SHKBP1-228ENST00000602239 COL3A1P02461 1466 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-228ENST00000602239 SOS1Q07889 1333 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-228ENST00000602239 ADAMTS7Q9UKP4 1686 aa21.24■□□□□ 0.99
SHKBP1-228ENST00000602239 ARHGAP27Q6ZUM4 889 aa21.24■□□□□ 0.99
SHKBP1-228ENST00000602239 IL17REQ8NFR9 667 aa21.24■□□□□ 0.99
SHKBP1-228ENST00000602239 KCPQ6ZWJ8 1503 aa21.24■□□□□ 0.99
SHKBP1-228ENST00000602239 VIRMAQ69YN4 1812 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-228ENST00000602239 POLRMTO00411 1230 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-228ENST00000602239 ZPR1O75312 459 aa21.23■□□□□ 0.99
SHKBP1-228ENST00000602239 ZBTB1Q9Y2K1 713 aa21.23■□□□□ 0.99
SHKBP1-228ENST00000602239 CHRNA5P30532 468 aa21.21■□□□□ 0.99
SHKBP1-228ENST00000602239 VSIG10Q8N0Z9 540 aa21.2■□□□□ 0.98
SHKBP1-228ENST00000602239 PHACTR3Q96KR7 559 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms