RNA–Protein interactions for RNA: ENST00000601614.6

SSBP4-211, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 628 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-211ENST00000601614 BCS1LQ9Y276 419 aa22.47■■□□□ 1.19
SSBP4-211ENST00000601614 C4AP0C0L4 1744 aa22.46■■□□□ 1.19
SSBP4-211ENST00000601614 COL5A3P25940 1745 aaPredicted RBP22.46■■□□□ 1.19
SSBP4-211ENST00000601614 ARFGEF1Q9Y6D6 1849 aa22.46■■□□□ 1.19
SSBP4-211ENST00000601614 A0A0G2JLW4 131 aa22.46■■□□□ 1.19
SSBP4-211ENST00000601614 TMOD3Q9NYL9 352 aa22.46■■□□□ 1.19
SSBP4-211ENST00000601614 ATG3Q9NT62 314 aa22.45■■□□□ 1.18
SSBP4-211ENST00000601614 KDRP35968 1356 aa22.45■■□□□ 1.18
SSBP4-211ENST00000601614 MYH14Q7Z406 1995 aaKnown RBP22.45■■□□□ 1.18
SSBP4-211ENST00000601614 TGFB2P61812 414 aa22.44■■□□□ 1.18
SSBP4-211ENST00000601614 SPG7Q9UQ90 795 aa22.44■■□□□ 1.18
SSBP4-211ENST00000601614 ZNF831Q5JPB2 1677 aa22.43■■□□□ 1.18
SSBP4-211ENST00000601614 HTRA3P83110 453 aa22.43■■□□□ 1.18
SSBP4-211ENST00000601614 SLC4A9Q96Q91 983 aa22.43■■□□□ 1.18
SSBP4-211ENST00000601614 CARD14Q9BXL6 1004 aa22.43■■□□□ 1.18
SSBP4-211ENST00000601614 PHKG2P15735 406 aa22.42■■□□□ 1.18
SSBP4-211ENST00000601614 DPEP1P16444 411 aa22.42■■□□□ 1.18
SSBP4-211ENST00000601614 ARHGAP27Q6ZUM4 889 aa22.42■■□□□ 1.18
SSBP4-211ENST00000601614 EYA1Q99502 592 aa22.42■■□□□ 1.18
SSBP4-211ENST00000601614 SLC24A1O60721 1099 aa22.41■■□□□ 1.18
SSBP4-211ENST00000601614 TMF1P82094 1093 aa22.4■■□□□ 1.18
SSBP4-211ENST00000601614 PPM1GO15355 546 aaPredicted RBP22.39■■□□□ 1.17
SSBP4-211ENST00000601614 KCNA3P22001 575 aa22.39■■□□□ 1.17
SSBP4-211ENST00000601614 TRAPPC3LQ5T215 181 aa22.39■■□□□ 1.17
SSBP4-211ENST00000601614 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.39■■□□□ 1.17
SSBP4-211ENST00000601614 RTCBQ9Y3I0 505 aaKnown RBP22.39■■□□□ 1.17
SSBP4-211ENST00000601614 SBF1O95248 1867 aa22.39■■□□□ 1.17
SSBP4-211ENST00000601614 FCHSD2O94868 740 aa22.38■■□□□ 1.17
SSBP4-211ENST00000601614 IFNL2Q8IZJ0 200 aa22.38■■□□□ 1.17
SSBP4-211ENST00000601614 NLGN1Q8N2Q7 840 aa22.38■■□□□ 1.17
SSBP4-211ENST00000601614 ARHGEF1Q92888 912 aaKnown RBP22.38■■□□□ 1.17
SSBP4-211ENST00000601614 WASHC2AQ641Q2 1341 aa22.37■■□□□ 1.17
SSBP4-211ENST00000601614 GYS1P13807 737 aa22.37■■□□□ 1.17
SSBP4-211ENST00000601614 COL13A1Q5TAT6 717 aaPredicted RBP22.37■■□□□ 1.17
SSBP4-211ENST00000601614 RBM46Q8TBY0 533 aaKnown RBP22.37■■□□□ 1.17
SSBP4-211ENST00000601614 KCPQ6ZWJ8 1503 aa22.36■■□□□ 1.17
SSBP4-211ENST00000601614 C9orf131Q5VYM1 1079 aa22.36■■□□□ 1.17
SSBP4-211ENST00000601614 KLRG1Q96E93 195 aa22.36■■□□□ 1.17
SSBP4-211ENST00000601614 CCDC87Q9NVE4 849 aa22.36■■□□□ 1.17
SSBP4-211ENST00000601614 JMYQ8N9B5 988 aa22.34■■□□□ 1.17
SSBP4-211ENST00000601614 CNTNAP4Q9C0A0 1308 aa22.33■■□□□ 1.17
SSBP4-211ENST00000601614 RC3H1Q5TC82 1133 aaKnown RBP22.33■■□□□ 1.17
SSBP4-211ENST00000601614 RBM42Q9BTD8 480 aaKnown RBP22.33■■□□□ 1.17
SSBP4-211ENST00000601614 PLEKHG2Q9H7P9 1386 aa22.33■■□□□ 1.17
SSBP4-211ENST00000601614 TNRC6CQ9HCJ0 1690 aaKnown RBP22.33■■□□□ 1.16
SSBP4-211ENST00000601614 ADRA2BP18089 450 aa22.32■■□□□ 1.16
SSBP4-211ENST00000601614 RPS6KA4O75676 772 aa22.31■■□□□ 1.16
SSBP4-211ENST00000601614 POLKQ9UBT6 870 aa22.31■■□□□ 1.16
SSBP4-211ENST00000601614 PARP3Q9Y6F1 533 aa22.31■■□□□ 1.16
SSBP4-211ENST00000601614 ADAMTS7Q9UKP4 1686 aa22.3■■□□□ 1.16
SSBP4-211ENST00000601614 RFC4P35249 363 aa22.3■■□□□ 1.16
SSBP4-211ENST00000601614 DCAF5Q96JK2 942 aa22.3■■□□□ 1.16
SSBP4-211ENST00000601614 TJP1Q07157 1748 aa22.3■■□□□ 1.16
SSBP4-211ENST00000601614 KDM6AO15550 1401 aaPredicted RBP22.3■■□□□ 1.16
SSBP4-211ENST00000601614 FSTL1Q12841 308 aa22.29■■□□□ 1.16
SSBP4-211ENST00000601614 EIF4A2Q14240 407 aaKnown RBP22.29■■□□□ 1.16
SSBP4-211ENST00000601614 C16orf71Q8IYS4 520 aaPredicted RBP22.29■■□□□ 1.16
SSBP4-211ENST00000601614 DDR1Q08345 913 aa22.28■■□□□ 1.16
SSBP4-211ENST00000601614 RRAGCQ9HB90 399 aa22.28■■□□□ 1.16
SSBP4-211ENST00000601614 RNF181Q9P0P0 153 aa22.28■■□□□ 1.16
SSBP4-211ENST00000601614 PIM2Q9P1W9 311 aa22.28■■□□□ 1.16
SSBP4-211ENST00000601614 SRP68Q9UHB9 627 aaKnown RBP22.28■■□□□ 1.16
SSBP4-211ENST00000601614 ERVV-2B6SEH9 535 aa22.27■■□□□ 1.16
SSBP4-211ENST00000601614 CAPN15O75808 1086 aa22.27■■□□□ 1.16
SSBP4-211ENST00000601614 PCNTO95613 3336 aa22.26■■□□□ 1.15
SSBP4-211ENST00000601614 CHRNA5P30532 468 aa22.26■■□□□ 1.15
SSBP4-211ENST00000601614 FKBP8Q14318 412 aa22.26■■□□□ 1.15
SSBP4-211ENST00000601614 CDCA8Q53HL2 280 aa22.25■■□□□ 1.15
SSBP4-211ENST00000601614 DALRD3Q5D0E6 543 aaKnown RBP22.25■■□□□ 1.15
SSBP4-211ENST00000601614 CCDC88AQ3V6T2 1871 aa22.25■■□□□ 1.15
SSBP4-211ENST00000601614 KDM2BQ8NHM5 1336 aa22.25■■□□□ 1.15
SSBP4-211ENST00000601614 AFDNP55196 1824 aaKnown RBP22.24■■□□□ 1.15
SSBP4-211ENST00000601614 CRKLP46109 303 aaKnown RBP22.23■■□□□ 1.15
SSBP4-211ENST00000601614 USP42Q9H9J4 1324 aaKnown RBP22.23■■□□□ 1.15
SSBP4-211ENST00000601614 PTCD1O75127 700 aaKnown RBP22.21■■□□□ 1.15
SSBP4-211ENST00000601614 TNNT2P45379 298 aaPredicted RBP22.21■■□□□ 1.15
SSBP4-211ENST00000601614 TNS4Q8IZW8 715 aa22.21■■□□□ 1.15
SSBP4-211ENST00000601614 DLEC1Q9Y238 1755 aa22.2■■□□□ 1.14
SSBP4-211ENST00000601614 PRELPP51888 382 aa22.2■■□□□ 1.14
SSBP4-211ENST00000601614 CABP4P57796 275 aa22.2■■□□□ 1.14
SSBP4-211ENST00000601614 RASSF7Q02833 373 aa22.2■■□□□ 1.14
SSBP4-211ENST00000601614 SCN11AQ9UI33 1791 aa22.2■■□□□ 1.14
SSBP4-211ENST00000601614 POLRMTO00411 1230 aaKnown RBP22.19■■□□□ 1.14
SSBP4-211ENST00000601614 HSP90AB1P08238 724 aaKnown RBP22.19■■□□□ 1.14
SSBP4-211ENST00000601614 ZNF530Q6P9A1 599 aaPredicted RBP22.19■■□□□ 1.14
SSBP4-211ENST00000601614 TIAM2Q8IVF5 1701 aa22.19■■□□□ 1.14
SSBP4-211ENST00000601614 NRXN2Q9P2S2 1712 aa22.18■■□□□ 1.14
SSBP4-211ENST00000601614 SMC1BQ8NDV3 1235 aa22.18■■□□□ 1.14
SSBP4-211ENST00000601614 TM4SF1P30408 202 aa22.17■■□□□ 1.14
SSBP4-211ENST00000601614 PLEKHO1Q53GL0 409 aaPredicted RBP22.17■■□□□ 1.14
SSBP4-211ENST00000601614 VIRMAQ69YN4 1812 aaKnown RBP22.16■■□□□ 1.14
SSBP4-211ENST00000601614 INTS5Q6P9B9 1019 aaKnown RBP22.16■■□□□ 1.14
SSBP4-211ENST00000601614 NFATC2IPQ8NCF5 419 aa22.16■■□□□ 1.14
SSBP4-211ENST00000601614 AEBP1Q8IUX7 1158 aa22.15■■□□□ 1.14
SSBP4-211ENST00000601614 MTHFSP49914 203 aa22.14■■□□□ 1.13
SSBP4-211ENST00000601614 HSPA1AP0DMV8 641 aaKnown RBP22.13■■□□□ 1.13
SSBP4-211ENST00000601614 HSPA1BP0DMV9 641 aaKnown RBP22.13■■□□□ 1.13
SSBP4-211ENST00000601614 AMOTQ4VCS5 1084 aa22.12■■□□□ 1.13
SSBP4-211ENST00000601614 USPL1Q5W0Q7 1092 aa22.12■■□□□ 1.13
SSBP4-211ENST00000601614 ZC3H4Q9UPT8 1303 aaKnown RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms