RNA–Protein interactions for RNA: ENST00000601357.6

SSBP4-209, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 606 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-209ENST00000601357 LINC00116Q8NCU8 138 aa30.71■■■□□ 2.51
SSBP4-209ENST00000601357 SCN11AQ9UI33 1791 aa30.7■■■□□ 2.51
SSBP4-209ENST00000601357 MSH5O43196 834 aa30.7■■■□□ 2.51
SSBP4-209ENST00000601357 ITPK1Q13572 414 aa30.7■■■□□ 2.51
SSBP4-209ENST00000601357 AK7Q96M32 723 aa30.7■■■□□ 2.51
SSBP4-209ENST00000601357 C1orf141Q5JVX7 400 aa30.69■■■□□ 2.5
SSBP4-209ENST00000601357 DIAPH1O60610 1272 aaKnown RBP30.68■■■□□ 2.5
SSBP4-209ENST00000601357 ATP6V1AP38606 617 aa30.67■■■□□ 2.5
SSBP4-209ENST00000601357 COL5A3P25940 1745 aaPredicted RBP30.66■■■□□ 2.5
SSBP4-209ENST00000601357 CABP4P57796 275 aa30.65■■■□□ 2.5
SSBP4-209ENST00000601357 SLC4A9Q96Q91 983 aa30.65■■■□□ 2.5
SSBP4-209ENST00000601357 HMOX1P09601 288 aa30.64■■■□□ 2.5
SSBP4-209ENST00000601357 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.63■■■□□ 2.49
SSBP4-209ENST00000601357 SSFA2P28290 1259 aa30.63■■■□□ 2.49
SSBP4-209ENST00000601357 AKAP4Q5JQC9 854 aa30.63■■■□□ 2.49
SSBP4-209ENST00000601357 MSL1Q68DK7 614 aa30.63■■■□□ 2.49
SSBP4-209ENST00000601357 ADAMTS7Q9UKP4 1686 aa30.62■■■□□ 2.49
SSBP4-209ENST00000601357 VIRMAQ69YN4 1812 aaKnown RBP30.62■■■□□ 2.49
SSBP4-209ENST00000601357 CNGB1Q14028 1251 aaPredicted RBP30.62■■■□□ 2.49
SSBP4-209ENST00000601357 SMIM5Q71RC9 77 aa30.62■■■□□ 2.49
SSBP4-209ENST00000601357 CICQ96RK0 1608 aaPredicted RBP30.61■■■□□ 2.49
SSBP4-209ENST00000601357 GOLGB1Q14789 3259 aaKnown RBP30.61■■■□□ 2.49
SSBP4-209ENST00000601357 PHF14O94880 888 aa30.6■■■□□ 2.49
SSBP4-209ENST00000601357 MRC1P22897 1456 aa30.6■■■□□ 2.49
SSBP4-209ENST00000601357 YY1P25490 414 aa30.6■■■□□ 2.49
SSBP4-209ENST00000601357 NFATC2IPQ8NCF5 419 aa30.6■■■□□ 2.49
SSBP4-209ENST00000601357 RBM42Q9BTD8 480 aaKnown RBP30.59■■■□□ 2.49
SSBP4-209ENST00000601357 GNPATO15228 680 aa30.58■■■□□ 2.49
SSBP4-209ENST00000601357 MTHFSDQ2M296 383 aaKnown RBP30.56■■■□□ 2.48
SSBP4-209ENST00000601357 KLHL34Q8N239 644 aa30.56■■■□□ 2.48
SSBP4-209ENST00000601357 TJP1Q07157 1748 aa30.56■■■□□ 2.48
SSBP4-209ENST00000601357 NLGN2Q8NFZ4 835 aa30.55■■■□□ 2.48
SSBP4-209ENST00000601357 CNTNAP4Q9C0A0 1308 aa30.54■■■□□ 2.48
SSBP4-209ENST00000601357 RC3H1Q5TC82 1133 aaKnown RBP30.54■■■□□ 2.48
SSBP4-209ENST00000601357 LGR6Q9HBX8 967 aa30.54■■■□□ 2.48
SSBP4-209ENST00000601357 SLC52A2Q9HAB3 445 aa30.53■■■□□ 2.48
SSBP4-209ENST00000601357 MYH14Q7Z406 1995 aaKnown RBP30.53■■■□□ 2.48
SSBP4-209ENST00000601357 RNMTO43148 476 aaKnown RBP30.52■■■□□ 2.48
SSBP4-209ENST00000601357 U2SURPO15042 1029 aaKnown RBP30.51■■■□□ 2.47
SSBP4-209ENST00000601357 PTCD1O75127 700 aaKnown RBP30.51■■■□□ 2.47
SSBP4-209ENST00000601357 CHD4Q14839 1912 aa30.5■■■□□ 2.47
SSBP4-209ENST00000601357 RTCBQ9Y3I0 505 aaKnown RBP30.49■■■□□ 2.47
SSBP4-209ENST00000601357 CD2APQ9Y5K6 639 aa30.49■■■□□ 2.47
SSBP4-209ENST00000601357 C4AP0C0L4 1744 aa30.48■■■□□ 2.47
SSBP4-209ENST00000601357 PPP2R1AP30153 589 aa30.48■■■□□ 2.47
SSBP4-209ENST00000601357 ADRA2BP18089 450 aa30.47■■■□□ 2.47
SSBP4-209ENST00000601357 CFAP53Q96M91 514 aa30.47■■■□□ 2.47
SSBP4-209ENST00000601357 RPS6KA4O75676 772 aa30.46■■■□□ 2.47
SSBP4-209ENST00000601357 GPR162Q16538 588 aa30.46■■■□□ 2.47
SSBP4-209ENST00000601357 TRAPPC3LQ5T215 181 aa30.46■■■□□ 2.47
SSBP4-209ENST00000601357 KCPQ6ZWJ8 1503 aa30.46■■■□□ 2.47
SSBP4-209ENST00000601357 UBR2Q8IWV8 1755 aa30.45■■■□□ 2.46
SSBP4-209ENST00000601357 ARHGEF1Q92888 912 aaKnown RBP30.44■■■□□ 2.46
SSBP4-209ENST00000601357 CRKLP46109 303 aaKnown RBP30.43■■■□□ 2.46
SSBP4-209ENST00000601357 SIPA1L3O60292 1781 aaPredicted RBP30.42■■■□□ 2.46
SSBP4-209ENST00000601357 GAS2L2Q8NHY3 880 aa30.42■■■□□ 2.46
SSBP4-209ENST00000601357 RSPH6AQ9H0K4 717 aa30.42■■■□□ 2.46
SSBP4-209ENST00000601357 SLC39A6Q13433 755 aa30.4■■■□□ 2.46
SSBP4-209ENST00000601357 GNAT3A8MTJ3 354 aa30.39■■■□□ 2.46
SSBP4-209ENST00000601357 YBX3P16989 372 aaKnown RBP eCLIP30.39■■■□□ 2.46
SSBP4-209ENST00000601357 KIF13BQ9NQT8 1826 aa30.38■■■□□ 2.45
SSBP4-209ENST00000601357 PRKAR2BP31323 418 aa30.38■■■□□ 2.45
SSBP4-209ENST00000601357 INTS5Q6P9B9 1019 aaKnown RBP30.38■■■□□ 2.45
SSBP4-209ENST00000601357 PELP1Q8IZL8 1130 aaKnown RBP30.38■■■□□ 2.45
SSBP4-209ENST00000601357 NLGN1Q8N2Q7 840 aa30.38■■■□□ 2.45
SSBP4-209ENST00000601357 IL17REQ8NFR9 667 aa30.38■■■□□ 2.45
SSBP4-209ENST00000601357 PHACTR3Q96KR7 559 aa30.38■■■□□ 2.45
SSBP4-209ENST00000601357 NUDCQ9Y266 331 aa30.38■■■□□ 2.45
SSBP4-209ENST00000601357 MMP10P09238 476 aa30.37■■■□□ 2.45
SSBP4-209ENST00000601357 GYS1P13807 737 aa30.37■■■□□ 2.45
SSBP4-209ENST00000601357 RFC4P35249 363 aa30.37■■■□□ 2.45
SSBP4-209ENST00000601357 DNAJC10Q8IXB1 793 aa30.36■■■□□ 2.45
SSBP4-209ENST00000601357 VSIG10Q8N0Z9 540 aa30.35■■■□□ 2.45
SSBP4-209ENST00000601357 CEMIPQ8WUJ3 1361 aa30.35■■■□□ 2.45
SSBP4-209ENST00000601357 CYP19A1P11511 503 aaPredicted RBP30.34■■■□□ 2.45
SSBP4-209ENST00000601357 KIAA1551Q9HCM1 1747 aa30.33■■■□□ 2.45
SSBP4-209ENST00000601357 U2AF1L5P0DN76 240 aaPredicted RBP30.33■■■□□ 2.45
SSBP4-209ENST00000601357 U2AF1Q01081 240 aaKnown RBP eCLIP30.33■■■□□ 2.45
SSBP4-209ENST00000601357 CCDC87Q9NVE4 849 aa30.33■■■□□ 2.45
SSBP4-209ENST00000601357 GRIN3BO60391 1043 aa30.32■■■□□ 2.44
SSBP4-209ENST00000601357 FCHSD2O94868 740 aa30.32■■■□□ 2.44
SSBP4-209ENST00000601357 USP42Q9H9J4 1324 aaKnown RBP30.31■■■□□ 2.44
SSBP4-209ENST00000601357 TEFQ10587 303 aa30.31■■■□□ 2.44
SSBP4-209ENST00000601357 ZNF784Q8NCA9 323 aaPredicted RBP30.31■■■□□ 2.44
SSBP4-209ENST00000601357 SOS1Q07889 1333 aaPredicted RBP30.29■■■□□ 2.44
SSBP4-209ENST00000601357 SRP68Q9UHB9 627 aaKnown RBP30.29■■■□□ 2.44
SSBP4-209ENST00000601357 C10orf71Q711Q0 1435 aa30.29■■■□□ 2.44
SSBP4-209ENST00000601357 ZNF790Q6PG37 636 aa30.27■■■□□ 2.44
SSBP4-209ENST00000601357 TTC5Q8N0Z6 440 aa30.27■■■□□ 2.44
SSBP4-209ENST00000601357 PXDNLA1KZ92 1463 aa30.26■■■□□ 2.44
SSBP4-209ENST00000601357 FKBP8Q14318 412 aa30.25■■■□□ 2.43
SSBP4-209ENST00000601357 ZNF496Q96IT1 587 aaPredicted RBP30.25■■■□□ 2.43
SSBP4-209ENST00000601357 ZBTB1Q9Y2K1 713 aa30.25■■■□□ 2.43
SSBP4-209ENST00000601357 HEG1Q9ULI3 1381 aa30.24■■■□□ 2.43
SSBP4-209ENST00000601357 N4BP2Q86UW6 1770 aaPredicted RBP30.23■■■□□ 2.43
SSBP4-209ENST00000601357 PARP3Q9Y6F1 533 aa30.23■■■□□ 2.43
SSBP4-209ENST00000601357 COL15A1P39059 1388 aa30.23■■■□□ 2.43
SSBP4-209ENST00000601357 TGFB2P61812 414 aa30.21■■■□□ 2.43
SSBP4-209ENST00000601357 DDR1Q08345 913 aa30.2■■■□□ 2.43
SSBP4-209ENST00000601357 BRCA1P38398 1863 aaKnown RBP30.19■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms