RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 CD2APQ9Y5K6 639 aa23.2■■□□□ 1.3
SCAF1-204ENST00000601038 UBR3Q6ZT12 1888 aa23.19■■□□□ 1.3
SCAF1-204ENST00000601038 KIF7Q2M1P5 1343 aa23.19■■□□□ 1.3
SCAF1-204ENST00000601038 AMER1Q5JTC6 1135 aaPredicted RBP23.19■■□□□ 1.3
SCAF1-204ENST00000601038 ZNF530Q6P9A1 599 aaPredicted RBP23.18■■□□□ 1.3
SCAF1-204ENST00000601038 SMIM5Q71RC9 77 aa23.18■■□□□ 1.3
SCAF1-204ENST00000601038 AEBP1Q8IUX7 1158 aa23.17■■□□□ 1.3
SCAF1-204ENST00000601038 UTRNP46939 3433 aa23.17■■□□□ 1.3
SCAF1-204ENST00000601038 GNPATO15228 680 aa23.16■■□□□ 1.3
SCAF1-204ENST00000601038 GRIN3BO60391 1043 aa23.16■■□□□ 1.3
SCAF1-204ENST00000601038 IL13P35225 146 aa23.16■■□□□ 1.3
SCAF1-204ENST00000601038 SULT6B1Q6IMI4 303 aa23.16■■□□□ 1.3
SCAF1-204ENST00000601038 YBX3P16989 372 aaKnown RBP eCLIP23.15■■□□□ 1.3
SCAF1-204ENST00000601038 MTHFSP49914 203 aa23.14■■□□□ 1.29
SCAF1-204ENST00000601038 CABP4P57796 275 aa23.14■■□□□ 1.29
SCAF1-204ENST00000601038 C1orf141Q5JVX7 400 aa23.14■■□□□ 1.29
SCAF1-204ENST00000601038 KDM6AO15550 1401 aaPredicted RBP23.14■■□□□ 1.29
SCAF1-204ENST00000601038 KDRP35968 1356 aa23.14■■□□□ 1.29
SCAF1-204ENST00000601038 SLC4A9Q96Q91 983 aa23.13■■□□□ 1.29
SCAF1-204ENST00000601038 RBM42Q9BTD8 480 aaKnown RBP23.13■■□□□ 1.29
SCAF1-204ENST00000601038 PER1O15534 1290 aaPredicted RBP23.12■■□□□ 1.29
SCAF1-204ENST00000601038 ZNF831Q5JPB2 1677 aa23.1■■□□□ 1.29
SCAF1-204ENST00000601038 RC3H1Q5TC82 1133 aaKnown RBP23.1■■□□□ 1.29
SCAF1-204ENST00000601038 RTCBQ9Y3I0 505 aaKnown RBP23.1■■□□□ 1.29
SCAF1-204ENST00000601038 TRAPPC3LQ5T215 181 aa23.09■■□□□ 1.29
SCAF1-204ENST00000601038 NFATC2IPQ8NCF5 419 aa23.08■■□□□ 1.29
SCAF1-204ENST00000601038 CNTNAP4Q9C0A0 1308 aa23.08■■□□□ 1.28
SCAF1-204ENST00000601038 ADRA2BP18089 450 aa23.07■■□□□ 1.28
SCAF1-204ENST00000601038 RPS6KA4O75676 772 aa23.05■■□□□ 1.28
SCAF1-204ENST00000601038 AKAP4Q5JQC9 854 aa23.05■■□□□ 1.28
SCAF1-204ENST00000601038 CC2D1BQ5T0F9 858 aaKnown RBP23.05■■□□□ 1.28
SCAF1-204ENST00000601038 ARHGEF1Q92888 912 aaKnown RBP23.05■■□□□ 1.28
SCAF1-204ENST00000601038 PTCD1O75127 700 aaKnown RBP23.04■■□□□ 1.28
SCAF1-204ENST00000601038 MMP10P09238 476 aa23.04■■□□□ 1.28
SCAF1-204ENST00000601038 NLGN1Q8N2Q7 840 aa23.04■■□□□ 1.28
SCAF1-204ENST00000601038 COL5A3P25940 1745 aaPredicted RBP23.02■■□□□ 1.28
SCAF1-204ENST00000601038 DIAPH1O60610 1272 aaKnown RBP23.02■■□□□ 1.28
SCAF1-204ENST00000601038 HMOX1P09601 288 aa23.02■■□□□ 1.28
SCAF1-204ENST00000601038 RFC4P35249 363 aa23.01■■□□□ 1.27
SCAF1-204ENST00000601038 NPC1L1Q9UHC9 1359 aa23.01■■□□□ 1.27
SCAF1-204ENST00000601038 GOLGB1Q14789 3259 aaKnown RBP23■■□□□ 1.27
SCAF1-204ENST00000601038 SCN11AQ9UI33 1791 aa23■■□□□ 1.27
SCAF1-204ENST00000601038 C1QTNF8P60827 252 aa23■■□□□ 1.27
SCAF1-204ENST00000601038 SLC52A2Q9HAB3 445 aa23■■□□□ 1.27
SCAF1-204ENST00000601038 LGR6Q9HBX8 967 aa23■■□□□ 1.27
SCAF1-204ENST00000601038 MYH14Q7Z406 1995 aaKnown RBP23■■□□□ 1.27
SCAF1-204ENST00000601038 GYS1P13807 737 aa22.99■■□□□ 1.27
SCAF1-204ENST00000601038 CRKLP46109 303 aaKnown RBP22.99■■□□□ 1.27
SCAF1-204ENST00000601038 RNMTO43148 476 aaKnown RBP22.98■■□□□ 1.27
SCAF1-204ENST00000601038 MTHFSDQ2M296 383 aaKnown RBP22.97■■□□□ 1.27
SCAF1-204ENST00000601038 GIGYF1O75420 1035 aaPredicted RBP22.96■■□□□ 1.27
SCAF1-204ENST00000601038 TGFB2P61812 414 aa22.96■■□□□ 1.27
SCAF1-204ENST00000601038 WWC3Q9ULE0 1092 aa22.96■■□□□ 1.27
SCAF1-204ENST00000601038 CCDC87Q9NVE4 849 aa22.94■■□□□ 1.26
SCAF1-204ENST00000601038 PARP3Q9Y6F1 533 aa22.94■■□□□ 1.26
SCAF1-204ENST00000601038 CICQ96RK0 1608 aaPredicted RBP22.93■■□□□ 1.26
SCAF1-204ENST00000601038 MRC1P22897 1456 aa22.93■■□□□ 1.26
SCAF1-204ENST00000601038 INTS5Q6P9B9 1019 aaKnown RBP22.93■■□□□ 1.26
SCAF1-204ENST00000601038 KIF13BQ9NQT8 1826 aa22.93■■□□□ 1.26
SCAF1-204ENST00000601038 PXDNLA1KZ92 1463 aa22.92■■□□□ 1.26
SCAF1-204ENST00000601038 TJP1Q07157 1748 aa22.92■■□□□ 1.26
SCAF1-204ENST00000601038 SLC39A6Q13433 755 aa22.92■■□□□ 1.26
SCAF1-204ENST00000601038 CNGB1Q14028 1251 aaPredicted RBP22.92■■□□□ 1.26
SCAF1-204ENST00000601038 DNAJC10Q8IXB1 793 aa22.92■■□□□ 1.26
SCAF1-204ENST00000601038 C10orf71Q711Q0 1435 aa22.91■■□□□ 1.26
SCAF1-204ENST00000601038 ATP10DQ9P241 1426 aa22.91■■□□□ 1.26
SCAF1-204ENST00000601038 USP42Q9H9J4 1324 aaKnown RBP22.91■■□□□ 1.26
SCAF1-204ENST00000601038 C4AP0C0L4 1744 aa22.91■■□□□ 1.26
SCAF1-204ENST00000601038 A0A0G2JLW4 131 aa22.9■■□□□ 1.26
SCAF1-204ENST00000601038 SRP68Q9UHB9 627 aaKnown RBP22.9■■□□□ 1.26
SCAF1-204ENST00000601038 COL3A1P02461 1466 aaPredicted RBP22.9■■□□□ 1.26
SCAF1-204ENST00000601038 ADCY9O60503 1353 aa22.89■■□□□ 1.26
SCAF1-204ENST00000601038 U2SURPO15042 1029 aaKnown RBP22.89■■□□□ 1.25
SCAF1-204ENST00000601038 CYP19A1P11511 503 aaPredicted RBP22.89■■□□□ 1.25
SCAF1-204ENST00000601038 FKBP8Q14318 412 aa22.89■■□□□ 1.25
SCAF1-204ENST00000601038 ADAMTS7Q9UKP4 1686 aa22.89■■□□□ 1.25
SCAF1-204ENST00000601038 SENP3-EIF4A1A0A087X0R7 540 aa22.88■■□□□ 1.25
SCAF1-204ENST00000601038 VSIG10Q8N0Z9 540 aa22.88■■□□□ 1.25
SCAF1-204ENST00000601038 VIRMAQ69YN4 1812 aaKnown RBP22.87■■□□□ 1.25
SCAF1-204ENST00000601038 DPEP1P16444 411 aa22.87■■□□□ 1.25
SCAF1-204ENST00000601038 GPBP1L1Q9HC44 474 aaPredicted RBP22.87■■□□□ 1.25
SCAF1-204ENST00000601038 BCS1LQ9Y276 419 aa22.87■■□□□ 1.25
SCAF1-204ENST00000601038 KIAA1551Q9HCM1 1747 aa22.87■■□□□ 1.25
SCAF1-204ENST00000601038 N4BP2Q86UW6 1770 aaPredicted RBP22.86■■□□□ 1.25
SCAF1-204ENST00000601038 SOS1Q07889 1333 aaPredicted RBP22.86■■□□□ 1.25
SCAF1-204ENST00000601038 ZPR1O75312 459 aa22.86■■□□□ 1.25
SCAF1-204ENST00000601038 GAS2L2Q8NHY3 880 aa22.86■■□□□ 1.25
SCAF1-204ENST00000601038 KCPQ6ZWJ8 1503 aa22.86■■□□□ 1.25
SCAF1-204ENST00000601038 DDR1Q08345 913 aa22.85■■□□□ 1.25
SCAF1-204ENST00000601038 GNAT3A8MTJ3 354 aa22.84■■□□□ 1.25
SCAF1-204ENST00000601038 TM4SF1P30408 202 aa22.84■■□□□ 1.25
SCAF1-204ENST00000601038 IL17REQ8NFR9 667 aa22.84■■□□□ 1.25
SCAF1-204ENST00000601038 CFAP53Q96M91 514 aa22.84■■□□□ 1.25
SCAF1-204ENST00000601038 KCNA3P22001 575 aa22.83■■□□□ 1.25
SCAF1-204ENST00000601038 USPL1Q5W0Q7 1092 aa22.83■■□□□ 1.25
SCAF1-204ENST00000601038 TTC5Q8N0Z6 440 aa22.83■■□□□ 1.25
SCAF1-204ENST00000601038 POLRMTO00411 1230 aaKnown RBP22.82■■□□□ 1.24
SCAF1-204ENST00000601038 NARFQ9UHQ1 456 aa22.82■■□□□ 1.24
SCAF1-204ENST00000601038 ZBTB1Q9Y2K1 713 aa22.82■■□□□ 1.24
SCAF1-204ENST00000601038 FCHSD2O94868 740 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms