RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 CABP4P57796 275 aa21.41■■□□□ 1.02
VRK3-221ENST00000600284 LINC00116Q8NCU8 138 aa21.4■■□□□ 1.02
VRK3-221ENST00000600284 KDM6AO15550 1401 aaPredicted RBP21.39■■□□□ 1.02
VRK3-221ENST00000600284 DIAPH1O60610 1272 aaKnown RBP21.39■■□□□ 1.01
VRK3-221ENST00000600284 ITPK1Q13572 414 aa21.39■■□□□ 1.01
VRK3-221ENST00000600284 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.38■■□□□ 1.01
VRK3-221ENST00000600284 AKAP4Q5JQC9 854 aa21.37■■□□□ 1.01
VRK3-221ENST00000600284 KLHL34Q8N239 644 aa21.37■■□□□ 1.01
VRK3-221ENST00000600284 MSL1Q68DK7 614 aa21.36■■□□□ 1.01
VRK3-221ENST00000600284 AMIGO3Q86WK7 504 aa21.36■■□□□ 1.01
VRK3-221ENST00000600284 RBM42Q9BTD8 480 aaKnown RBP21.36■■□□□ 1.01
VRK3-221ENST00000600284 PHF14O94880 888 aa21.35■■□□□ 1.01
VRK3-221ENST00000600284 RC3H1Q5TC82 1133 aaKnown RBP21.35■■□□□ 1.01
VRK3-221ENST00000600284 NFATC2IPQ8NCF5 419 aa21.35■■□□□ 1.01
VRK3-221ENST00000600284 UBR3Q6ZT12 1888 aa21.35■■□□□ 1.01
VRK3-221ENST00000600284 ZNF831Q5JPB2 1677 aa21.34■■□□□ 1.01
VRK3-221ENST00000600284 GNPATO15228 680 aa21.34■■□□□ 1.01
VRK3-221ENST00000600284 HMOX1P09601 288 aa21.34■■□□□ 1.01
VRK3-221ENST00000600284 GPR162Q16538 588 aa21.34■■□□□ 1.01
VRK3-221ENST00000600284 SLC4A9Q96Q91 983 aa21.34■■□□□ 1.01
VRK3-221ENST00000600284 CD2APQ9Y5K6 639 aa21.33■■□□□ 1.01
VRK3-221ENST00000600284 NLGN2Q8NFZ4 835 aa21.32■■□□□ 1
VRK3-221ENST00000600284 RTCBQ9Y3I0 505 aaKnown RBP21.32■■□□□ 1
VRK3-221ENST00000600284 CNTNAP4Q9C0A0 1308 aa21.31■■□□□ 1
VRK3-221ENST00000600284 TRAPPC3LQ5T215 181 aa21.31■■□□□ 1
VRK3-221ENST00000600284 ADRA2BP18089 450 aa21.3■■□□□ 1
VRK3-221ENST00000600284 SMIM5Q71RC9 77 aa21.3■■□□□ 1
VRK3-221ENST00000600284 SLC52A2Q9HAB3 445 aa21.3■■□□□ 1
VRK3-221ENST00000600284 RNMTO43148 476 aaKnown RBP21.29■■□□□ 1
VRK3-221ENST00000600284 MTHFSDQ2M296 383 aaKnown RBP21.29■■□□□ 1
VRK3-221ENST00000600284 COL3A1P02461 1466 aaPredicted RBP21.28■■□□□ 1
VRK3-221ENST00000600284 PTCD1O75127 700 aaKnown RBP21.28■■□□□ 1
VRK3-221ENST00000600284 RPS6KA4O75676 772 aa21.28■■□□□ 1
VRK3-221ENST00000600284 CNGB1Q14028 1251 aaPredicted RBP21.28■■□□□ 1
VRK3-221ENST00000600284 LGR6Q9HBX8 967 aa21.28■■□□□ 1
VRK3-221ENST00000600284 UTRNP46939 3433 aa21.28■■□□□ 1
VRK3-221ENST00000600284 SCN11AQ9UI33 1791 aa21.28■■□□□ 1
VRK3-221ENST00000600284 CFAP53Q96M91 514 aa21.27■■□□□ 1
VRK3-221ENST00000600284 U2SURPO15042 1029 aaKnown RBP21.26■□□□□ 0.99
VRK3-221ENST00000600284 GRIN3BO60391 1043 aa21.26■□□□□ 0.99
VRK3-221ENST00000600284 NLGN1Q8N2Q7 840 aa21.26■□□□□ 0.99
VRK3-221ENST00000600284 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
VRK3-221ENST00000600284 ARHGEF1Q92888 912 aaKnown RBP21.25■□□□□ 0.99
VRK3-221ENST00000600284 COL5A3P25940 1745 aaPredicted RBP21.24■□□□□ 0.99
VRK3-221ENST00000600284 MRC1P22897 1456 aa21.24■□□□□ 0.99
VRK3-221ENST00000600284 CHD4Q14839 1912 aa21.23■□□□□ 0.99
VRK3-221ENST00000600284 RFC4P35249 363 aa21.23■□□□□ 0.99
VRK3-221ENST00000600284 CRKLP46109 303 aaKnown RBP21.23■□□□□ 0.99
VRK3-221ENST00000600284 GAS2L2Q8NHY3 880 aa21.23■□□□□ 0.99
VRK3-221ENST00000600284 ZNF784Q8NCA9 323 aaPredicted RBP21.22■□□□□ 0.99
VRK3-221ENST00000600284 NUDCQ9Y266 331 aa21.22■□□□□ 0.99
VRK3-221ENST00000600284 CICQ96RK0 1608 aaPredicted RBP21.22■□□□□ 0.99
VRK3-221ENST00000600284 MMP10P09238 476 aa21.21■□□□□ 0.99
VRK3-221ENST00000600284 YBX3P16989 372 aaKnown RBP eCLIP21.21■□□□□ 0.993e-8■■□□□ 12.1
VRK3-221ENST00000600284 ADAMTS7Q9UKP4 1686 aa21.21■□□□□ 0.99
VRK3-221ENST00000600284 GNAT3A8MTJ3 354 aa21.2■□□□□ 0.98
VRK3-221ENST00000600284 GYS1P13807 737 aa21.2■□□□□ 0.98
VRK3-221ENST00000600284 PPP2R1AP30153 589 aa21.2■□□□□ 0.98
VRK3-221ENST00000600284 VSIG10Q8N0Z9 540 aa21.2■□□□□ 0.98
VRK3-221ENST00000600284 MYH14Q7Z406 1995 aaKnown RBP21.18■□□□□ 0.98
VRK3-221ENST00000600284 SLC39A6Q13433 755 aa21.18■□□□□ 0.98
VRK3-221ENST00000600284 INTS5Q6P9B9 1019 aaKnown RBP21.18■□□□□ 0.98
VRK3-221ENST00000600284 DNAJC10Q8IXB1 793 aa21.17■□□□□ 0.98
VRK3-221ENST00000600284 IL17REQ8NFR9 667 aa21.17■□□□□ 0.98
VRK3-221ENST00000600284 RSPH6AQ9H0K4 717 aa21.17■□□□□ 0.98
VRK3-221ENST00000600284 CCDC87Q9NVE4 849 aa21.17■□□□□ 0.98
VRK3-221ENST00000600284 TJP1Q07157 1748 aa21.16■□□□□ 0.98
VRK3-221ENST00000600284 CYP19A1P11511 503 aaPredicted RBP21.16■□□□□ 0.98
VRK3-221ENST00000600284 TEFQ10587 303 aa21.16■□□□□ 0.98
VRK3-221ENST00000600284 FCHSD2O94868 740 aa21.15■□□□□ 0.98
VRK3-221ENST00000600284 PRKAR2BP31323 418 aa21.15■□□□□ 0.98
VRK3-221ENST00000600284 TGFB2P61812 414 aa21.15■□□□□ 0.98
VRK3-221ENST00000600284 PARP3Q9Y6F1 533 aa21.15■□□□□ 0.98
VRK3-221ENST00000600284 GOLGB1Q14789 3259 aaKnown RBP21.14■□□□□ 0.98
VRK3-221ENST00000600284 USP42Q9H9J4 1324 aaKnown RBP21.14■□□□□ 0.97
VRK3-221ENST00000600284 TTC5Q8N0Z6 440 aa21.14■□□□□ 0.97
VRK3-221ENST00000600284 PHACTR3Q96KR7 559 aa21.14■□□□□ 0.97
VRK3-221ENST00000600284 KCPQ6ZWJ8 1503 aa21.14■□□□□ 0.97
VRK3-221ENST00000600284 U2AF1L5P0DN76 240 aaPredicted RBP21.13■□□□□ 0.97
VRK3-221ENST00000600284 U2AF1Q01081 240 aaKnown RBP eCLIP21.13■□□□□ 0.97
VRK3-221ENST00000600284 VIRMAQ69YN4 1812 aaKnown RBP21.13■□□□□ 0.97
VRK3-221ENST00000600284 CEMIPQ8WUJ3 1361 aa21.12■□□□□ 0.97
VRK3-221ENST00000600284 SOS1Q07889 1333 aaPredicted RBP21.11■□□□□ 0.97
VRK3-221ENST00000600284 ZPR1O75312 459 aa21.11■□□□□ 0.97
VRK3-221ENST00000600284 ZNF790Q6PG37 636 aa21.11■□□□□ 0.97
VRK3-221ENST00000600284 TEX13AQ9BXU3 409 aaPredicted RBP21.11■□□□□ 0.97
VRK3-221ENST00000600284 SRP68Q9UHB9 627 aaKnown RBP21.11■□□□□ 0.97
VRK3-221ENST00000600284 C4AP0C0L4 1744 aa21.1■□□□□ 0.97
VRK3-221ENST00000600284 STARD3NLO95772 234 aa21.1■□□□□ 0.97
VRK3-221ENST00000600284 FKBP8Q14318 412 aa21.1■□□□□ 0.97
VRK3-221ENST00000600284 C10orf71Q711Q0 1435 aa21.1■□□□□ 0.97
VRK3-221ENST00000600284 KIF13BQ9NQT8 1826 aa21.09■□□□□ 0.97
VRK3-221ENST00000600284 UBR2Q8IWV8 1755 aa21.08■□□□□ 0.97
VRK3-221ENST00000600284 TM4SF1P30408 202 aa21.08■□□□□ 0.97
VRK3-221ENST00000600284 ZNF496Q96IT1 587 aaPredicted RBP21.08■□□□□ 0.97
VRK3-221ENST00000600284 NARFQ9UHQ1 456 aa21.08■□□□□ 0.97
VRK3-221ENST00000600284 ZBTB1Q9Y2K1 713 aa21.08■□□□□ 0.97
VRK3-221ENST00000600284 PXDNLA1KZ92 1463 aa21.07■□□□□ 0.96
VRK3-221ENST00000600284 HTATSF1O43719 755 aaKnown RBP21.07■□□□□ 0.96
VRK3-221ENST00000600284 USPL1Q5W0Q7 1092 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms