RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 BRCA1P38398 1863 aaKnown RBP25.1■■□□□ 1.61
SSBP4-207ENST00000600244 ITPK1Q13572 414 aa25.09■■□□□ 1.61
SSBP4-207ENST00000600244 NLGN1Q8N2Q7 840 aa25.09■■□□□ 1.61
SSBP4-207ENST00000600244 COG3Q96JB2 828 aa25.09■■□□□ 1.61
SSBP4-207ENST00000600244 PKD1L3Q7Z443 1732 aa25.08■■□□□ 1.61
SSBP4-207ENST00000600244 RTL1A6NKG5 1358 aa25.07■■□□□ 1.6
SSBP4-207ENST00000600244 TMF1P82094 1093 aa25.06■■□□□ 1.6
SSBP4-207ENST00000600244 DCAF5Q96JK2 942 aa25.06■■□□□ 1.6
SSBP4-207ENST00000600244 CCDC87Q9NVE4 849 aa25.06■■□□□ 1.6
SSBP4-207ENST00000600244 RNF181Q9P0P0 153 aa25.06■■□□□ 1.6
SSBP4-207ENST00000600244 ARFGEF1Q9Y6D6 1849 aa25.06■■□□□ 1.6
SSBP4-207ENST00000600244 TNRC6CQ9HCJ0 1690 aaKnown RBP25.05■■□□□ 1.6
SSBP4-207ENST00000600244 NKX1-1Q15270 411 aaPredicted RBP25.05■■□□□ 1.6
SSBP4-207ENST00000600244 PUS7Q96PZ0 661 aaKnown RBP25.03■■□□□ 1.6
SSBP4-207ENST00000600244 PIM2Q9P1W9 311 aa25.03■■□□□ 1.6
SSBP4-207ENST00000600244 RRS1Q15050 365 aaKnown RBP25.02■■□□□ 1.6
SSBP4-207ENST00000600244 TRAPPC3LQ5T215 181 aa25.02■■□□□ 1.6
SSBP4-207ENST00000600244 ATP6V1AP38606 617 aa25.01■■□□□ 1.59
SSBP4-207ENST00000600244 ASAP1Q9ULH1 1129 aa25.01■■□□□ 1.59
SSBP4-207ENST00000600244 C4AP0C0L4 1744 aa25■■□□□ 1.59
SSBP4-207ENST00000600244 GYS1P13807 737 aa24.99■■□□□ 1.59
SSBP4-207ENST00000600244 DALRD3Q5D0E6 543 aaKnown RBP24.99■■□□□ 1.59
SSBP4-207ENST00000600244 SMG6Q86US8 1419 aaKnown RBP24.99■■□□□ 1.59
SSBP4-207ENST00000600244 RTCBQ9Y3I0 505 aaKnown RBP24.99■■□□□ 1.59
SSBP4-207ENST00000600244 SBF1O95248 1867 aa24.98■■□□□ 1.59
SSBP4-207ENST00000600244 ARHGEF1Q92888 912 aaKnown RBP24.98■■□□□ 1.59
SSBP4-207ENST00000600244 PARP3Q9Y6F1 533 aa24.98■■□□□ 1.59
SSBP4-207ENST00000600244 INSRP06213 1382 aa24.97■■□□□ 1.59
SSBP4-207ENST00000600244 HSP90AB2PQ58FF8 381 aa24.97■■□□□ 1.59
SSBP4-207ENST00000600244 VEGFAP15692 232 aaPredicted RBP24.96■■□□□ 1.59
SSBP4-207ENST00000600244 PCDH10Q9P2E7 1040 aa24.96■■□□□ 1.59
SSBP4-207ENST00000600244 ZC3H4Q9UPT8 1303 aaKnown RBP24.95■■□□□ 1.58
SSBP4-207ENST00000600244 ADRA2BP18089 450 aa24.95■■□□□ 1.58
SSBP4-207ENST00000600244 ATG3Q9NT62 314 aa24.95■■□□□ 1.58
SSBP4-207ENST00000600244 TMOD3Q9NYL9 352 aa24.95■■□□□ 1.58
SSBP4-207ENST00000600244 GLTPD2A6NH11 291 aa24.93■■□□□ 1.58
SSBP4-207ENST00000600244 RC3H1Q5TC82 1133 aaKnown RBP24.93■■□□□ 1.58
SSBP4-207ENST00000600244 SLC4A9Q96Q91 983 aa24.92■■□□□ 1.58
SSBP4-207ENST00000600244 PRDM10Q9NQV6 1147 aa24.92■■□□□ 1.58
SSBP4-207ENST00000600244 KDM6AO15550 1401 aaPredicted RBP24.92■■□□□ 1.58
SSBP4-207ENST00000600244 KDRP35968 1356 aa24.91■■□□□ 1.58
SSBP4-207ENST00000600244 FYB1O15117 783 aa24.9■■□□□ 1.58
SSBP4-207ENST00000600244 RFC4P35249 363 aa24.9■■□□□ 1.58
SSBP4-207ENST00000600244 FOXN1O15353 648 aa24.89■■□□□ 1.58
SSBP4-207ENST00000600244 RPS6KA4O75676 772 aa24.89■■□□□ 1.58
SSBP4-207ENST00000600244 SPG7Q9UQ90 795 aa24.89■■□□□ 1.58
SSBP4-207ENST00000600244 NCAPD2Q15021 1401 aa24.88■■□□□ 1.57
SSBP4-207ENST00000600244 CHRNA5P30532 468 aa24.88■■□□□ 1.57
SSBP4-207ENST00000600244 CNTNAP4Q9C0A0 1308 aa24.87■■□□□ 1.57
SSBP4-207ENST00000600244 POTECB2RU33 542 aa24.87■■□□□ 1.57
SSBP4-207ENST00000600244 SIN3AQ96ST3 1273 aa24.87■■□□□ 1.57
SSBP4-207ENST00000600244 CARD11Q9BXL7 1154 aa24.87■■□□□ 1.57
SSBP4-207ENST00000600244 GGNBP2Q9H3C7 697 aa24.87■■□□□ 1.57
SSBP4-207ENST00000600244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.87■■□□□ 1.573e-6■■□□□ 13.5
SSBP4-207ENST00000600244 FLT4P35916 1363 aa24.87■■□□□ 1.57
SSBP4-207ENST00000600244 KIF24Q5T7B8 1368 aa24.87■■□□□ 1.57
SSBP4-207ENST00000600244 RASSF7Q02833 373 aa24.86■■□□□ 1.57
SSBP4-207ENST00000600244 LMNB1P20700 586 aa24.85■■□□□ 1.57
SSBP4-207ENST00000600244 DDR1Q08345 913 aa24.85■■□□□ 1.57
SSBP4-207ENST00000600244 CREBZFQ9NS37 354 aa24.85■■□□□ 1.57
SSBP4-207ENST00000600244 MKRN1Q9UHC7 482 aaKnown RBP24.84■■□□□ 1.57
SSBP4-207ENST00000600244 ZNF831Q5JPB2 1677 aa24.84■■□□□ 1.57
SSBP4-207ENST00000600244 PHKG2P15735 406 aa24.83■■□□□ 1.57
SSBP4-207ENST00000600244 FKBP8Q14318 412 aa24.82■■□□□ 1.56
SSBP4-207ENST00000600244 FAM161AQ3B820 660 aa24.81■■□□□ 1.56
SSBP4-207ENST00000600244 IFNL2Q8IZJ0 200 aa24.81■■□□□ 1.56
SSBP4-207ENST00000600244 TONSLQ96HA7 1378 aa24.8■■□□□ 1.56
SSBP4-207ENST00000600244 RBM42Q9BTD8 480 aaKnown RBP24.8■■□□□ 1.56
SSBP4-207ENST00000600244 SRP68Q9UHB9 627 aaKnown RBP24.8■■□□□ 1.56
SSBP4-207ENST00000600244 COL5A3P25940 1745 aaPredicted RBP24.8■■□□□ 1.56
SSBP4-207ENST00000600244 MYH14Q7Z406 1995 aaKnown RBP24.8■■□□□ 1.56
SSBP4-207ENST00000600244 CTCFP49711 727 aaPredicted RBP24.79■■□□□ 1.56
SSBP4-207ENST00000600244 TESK2Q96S53 571 aa24.79■■□□□ 1.56
SSBP4-207ENST00000600244 POLRMTO00411 1230 aaKnown RBP24.77■■□□□ 1.56
SSBP4-207ENST00000600244 TM4SF1P30408 202 aa24.77■■□□□ 1.56
SSBP4-207ENST00000600244 USP42Q9H9J4 1324 aaKnown RBP24.77■■□□□ 1.56
SSBP4-207ENST00000600244 NEUROD1Q13562 356 aa24.76■■□□□ 1.55
SSBP4-207ENST00000600244 CNTNAP1P78357 1384 aa24.76■■□□□ 1.55
SSBP4-207ENST00000600244 EMILIN1Q9Y6C2 1016 aa24.75■■□□□ 1.55
SSBP4-207ENST00000600244 ERVV-2B6SEH9 535 aa24.74■■□□□ 1.55
SSBP4-207ENST00000600244 CHADLQ6NUI6 762 aa24.74■■□□□ 1.55
SSBP4-207ENST00000600244 ABHD8Q96I13 439 aa24.74■■□□□ 1.55
SSBP4-207ENST00000600244 EYA1Q99502 592 aa24.74■■□□□ 1.55
SSBP4-207ENST00000600244 NFKBIEO00221 500 aa24.72■■□□□ 1.55
SSBP4-207ENST00000600244 DPY19L2Q6NUT2 758 aa24.72■■□□□ 1.55
SSBP4-207ENST00000600244 WBP1LQ9NX94 342 aa24.72■■□□□ 1.55
SSBP4-207ENST00000600244 LBX1P52954 281 aa24.71■■□□□ 1.55
SSBP4-207ENST00000600244 AIDAQ96BJ3 306 aa24.71■■□□□ 1.55
SSBP4-207ENST00000600244 CCDC88AQ3V6T2 1871 aa24.7■■□□□ 1.55
SSBP4-207ENST00000600244 TIAM2Q8IVF5 1701 aa24.7■■□□□ 1.54
SSBP4-207ENST00000600244 CRKLP46109 303 aaKnown RBP24.7■■□□□ 1.54
SSBP4-207ENST00000600244 TTLL6Q8N841 843 aa24.69■■□□□ 1.54
SSBP4-207ENST00000600244 WASHC2AQ641Q2 1341 aa24.68■■□□□ 1.54
SSBP4-207ENST00000600244 POTEIP0CG38 1075 aa24.68■■□□□ 1.54
SSBP4-207ENST00000600244 POTEJP0CG39 1038 aa24.68■■□□□ 1.54
SSBP4-207ENST00000600244 VEGFBP49765 207 aa24.68■■□□□ 1.54
SSBP4-207ENST00000600244 RGS19P49795 217 aa24.68■■□□□ 1.54
SSBP4-207ENST00000600244 PASKQ96RG2 1323 aa24.67■■□□□ 1.54
SSBP4-207ENST00000600244 ST20-MTHFSA0A0A6YYL1 179 aa24.67■■□□□ 1.54
SSBP4-207ENST00000600244 SLC24A1O60721 1099 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms