RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 NBPF4Q96M43 638 aa19.54■□□□□ 0.72
SHKBP1-218ENST00000598907 SLC12A5Q9H2X9 1139 aa19.54■□□□□ 0.72
SHKBP1-218ENST00000598907 RNF181Q9P0P0 153 aa19.54■□□□□ 0.72
SHKBP1-218ENST00000598907 TATP17735 454 aaPredicted RBP19.53■□□□□ 0.72
SHKBP1-218ENST00000598907 ZEB1P37275 1124 aaPredicted RBP19.53■□□□□ 0.72
SHKBP1-218ENST00000598907 MAP2P11137 1827 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-218ENST00000598907 CGNL1Q0VF96 1302 aa19.51■□□□□ 0.71
SHKBP1-218ENST00000598907 C4AP0C0L4 1744 aa19.51■□□□□ 0.71
SHKBP1-218ENST00000598907 ARFGEF1Q9Y6D6 1849 aa19.51■□□□□ 0.71
SHKBP1-218ENST00000598907 SMG6Q86US8 1419 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-218ENST00000598907 LOC102724428A0A0B4J2F2 783 aa19.5■□□□□ 0.71
SHKBP1-218ENST00000598907 SIK1P57059 783 aa19.5■□□□□ 0.71
SHKBP1-218ENST00000598907 COG3Q96JB2 828 aa19.5■□□□□ 0.71
SHKBP1-218ENST00000598907 TERF2IPQ9NYB0 399 aa19.5■□□□□ 0.71
SHKBP1-218ENST00000598907 PIGBQ92521 554 aa19.49■□□□□ 0.71
SHKBP1-218ENST00000598907 CCDC87Q9NVE4 849 aa19.49■□□□□ 0.71
SHKBP1-218ENST00000598907 RTL1A6NKG5 1358 aa19.48■□□□□ 0.71
SHKBP1-218ENST00000598907 CYP27B1O15528 508 aa19.48■□□□□ 0.71
SHKBP1-218ENST00000598907 ITPK1Q13572 414 aa19.48■□□□□ 0.71
SHKBP1-218ENST00000598907 RRS1Q15050 365 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-218ENST00000598907 ATP6V1AP38606 617 aa19.45■□□□□ 0.7
SHKBP1-218ENST00000598907 TMF1P82094 1093 aa19.45■□□□□ 0.7
SHKBP1-218ENST00000598907 DALRD3Q5D0E6 543 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-218ENST00000598907 NLGN1Q8N2Q7 840 aa19.43■□□□□ 0.7
SHKBP1-218ENST00000598907 DCAF5Q96JK2 942 aa19.43■□□□□ 0.7
SHKBP1-218ENST00000598907 PIM2Q9P1W9 311 aa19.43■□□□□ 0.7
SHKBP1-218ENST00000598907 PARP3Q9Y6F1 533 aa19.43■□□□□ 0.7
SHKBP1-218ENST00000598907 KCNA3P22001 575 aa19.42■□□□□ 0.7
SHKBP1-218ENST00000598907 TMOD3Q9NYL9 352 aa19.42■□□□□ 0.7
SHKBP1-218ENST00000598907 ASAP1Q9ULH1 1129 aa19.42■□□□□ 0.7
SHKBP1-218ENST00000598907 SBF1O95248 1867 aa19.41■□□□□ 0.7
SHKBP1-218ENST00000598907 RASSF7Q02833 373 aa19.41■□□□□ 0.7
SHKBP1-218ENST00000598907 TRAPPC3LQ5T215 181 aa19.41■□□□□ 0.7
SHKBP1-218ENST00000598907 RTCBQ9Y3I0 505 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-218ENST00000598907 MKRN1Q9UHC7 482 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-218ENST00000598907 TIAM2Q8IVF5 1701 aa19.39■□□□□ 0.7
SHKBP1-218ENST00000598907 GYS1P13807 737 aa19.38■□□□□ 0.69
SHKBP1-218ENST00000598907 CHRNA5P30532 468 aa19.38■□□□□ 0.69
SHKBP1-218ENST00000598907 FAM161AQ3B820 660 aa19.38■□□□□ 0.69
SHKBP1-218ENST00000598907 HSP90AB2PQ58FF8 381 aa19.38■□□□□ 0.69
SHKBP1-218ENST00000598907 FOXN1O15353 648 aa19.37■□□□□ 0.69
SHKBP1-218ENST00000598907 VEGFAP15692 232 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-218ENST00000598907 ARHGEF1Q92888 912 aaKnown RBP19.37■□□□□ 0.69
SHKBP1-218ENST00000598907 RFC4P35249 363 aa19.36■□□□□ 0.69
SHKBP1-218ENST00000598907 INSRP06213 1382 aa19.35■□□□□ 0.69
SHKBP1-218ENST00000598907 KDRP35968 1356 aa19.35■□□□□ 0.69
SHKBP1-218ENST00000598907 GGNBP2Q9H3C7 697 aa19.35■□□□□ 0.69
SHKBP1-218ENST00000598907 COL5A3P25940 1745 aaPredicted RBP19.34■□□□□ 0.69
SHKBP1-218ENST00000598907 FLT4P35916 1363 aa19.33■□□□□ 0.69
SHKBP1-218ENST00000598907 RBM42Q9BTD8 480 aaKnown RBP19.33■□□□□ 0.68
SHKBP1-218ENST00000598907 CARD11Q9BXL7 1154 aa19.33■□□□□ 0.68
SHKBP1-218ENST00000598907 ATG3Q9NT62 314 aa19.33■□□□□ 0.68
SHKBP1-218ENST00000598907 GLTPD2A6NH11 291 aa19.32■□□□□ 0.68
SHKBP1-218ENST00000598907 NKX1-1Q15270 411 aaPredicted RBP19.32■□□□□ 0.68
SHKBP1-218ENST00000598907 SPG7Q9UQ90 795 aa19.32■□□□□ 0.68
SHKBP1-218ENST00000598907 ZC3H4Q9UPT8 1303 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-218ENST00000598907 ADRA2BP18089 450 aa19.31■□□□□ 0.68
SHKBP1-218ENST00000598907 DDR1Q08345 913 aa19.31■□□□□ 0.68
SHKBP1-218ENST00000598907 SRP68Q9UHB9 627 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-218ENST00000598907 KDM6AO15550 1401 aaPredicted RBP19.31■□□□□ 0.68
SHKBP1-218ENST00000598907 SLC4A9Q96Q91 983 aa19.3■□□□□ 0.68
SHKBP1-218ENST00000598907 PRDM10Q9NQV6 1147 aa19.3■□□□□ 0.68
SHKBP1-218ENST00000598907 LMNB1P20700 586 aa19.29■□□□□ 0.68
SHKBP1-218ENST00000598907 AIDAQ96BJ3 306 aa19.29■□□□□ 0.68
SHKBP1-218ENST00000598907 CNTNAP4Q9C0A0 1308 aa19.28■□□□□ 0.68
SHKBP1-218ENST00000598907 KIF20BQ96Q89 1820 aa19.28■□□□□ 0.68
SHKBP1-218ENST00000598907 RPS6KA4O75676 772 aa19.28■□□□□ 0.68
SHKBP1-218ENST00000598907 FKBP8Q14318 412 aa19.28■□□□□ 0.68
SHKBP1-218ENST00000598907 CREBZFQ9NS37 354 aa19.28■□□□□ 0.68
SHKBP1-218ENST00000598907 PCDH10Q9P2E7 1040 aa19.28■□□□□ 0.68
SHKBP1-218ENST00000598907 CTCFP49711 727 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-218ENST00000598907 ZNF831Q5JPB2 1677 aa19.27■□□□□ 0.67
SHKBP1-218ENST00000598907 CCDC88AQ3V6T2 1871 aa19.26■□□□□ 0.67
SHKBP1-218ENST00000598907 FYB1O15117 783 aa19.26■□□□□ 0.67
SHKBP1-218ENST00000598907 PHKG2P15735 406 aa19.26■□□□□ 0.67
SHKBP1-218ENST00000598907 MYH14Q7Z406 1995 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-218ENST00000598907 CNTNAP1P78357 1384 aa19.25■□□□□ 0.67
SHKBP1-218ENST00000598907 LBX1P52954 281 aa19.25■□□□□ 0.67
SHKBP1-218ENST00000598907 RC3H1Q5TC82 1133 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-218ENST00000598907 ABHD8Q96I13 439 aa19.25■□□□□ 0.67
SHKBP1-218ENST00000598907 EMILIN1Q9Y6C2 1016 aa19.25■□□□□ 0.67
SHKBP1-218ENST00000598907 NCAPD2Q15021 1401 aa19.25■□□□□ 0.67
SHKBP1-218ENST00000598907 POTECB2RU33 542 aa19.24■□□□□ 0.67
SHKBP1-218ENST00000598907 IFNL2Q8IZJ0 200 aa19.24■□□□□ 0.67
SHKBP1-218ENST00000598907 USP42Q9H9J4 1324 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-218ENST00000598907 PPM1GO15355 546 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-218ENST00000598907 DLEC1Q9Y238 1755 aa19.22■□□□□ 0.67
SHKBP1-218ENST00000598907 POLRMTO00411 1230 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-218ENST00000598907 POTEIP0CG38 1075 aa19.22■□□□□ 0.67
SHKBP1-218ENST00000598907 POTEJP0CG39 1038 aa19.22■□□□□ 0.67
SHKBP1-218ENST00000598907 CHADLQ6NUI6 762 aa19.22■□□□□ 0.67
SHKBP1-218ENST00000598907 PUS7Q96PZ0 661 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-218ENST00000598907 KIF24Q5T7B8 1368 aa19.21■□□□□ 0.67
SHKBP1-218ENST00000598907 NFKBIEO00221 500 aa19.2■□□□□ 0.66
SHKBP1-218ENST00000598907 CRKLP46109 303 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-218ENST00000598907 MLLT1Q03111 559 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-218ENST00000598907 PTCD1O75127 700 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-218ENST00000598907 VEGFBP49765 207 aa19.19■□□□□ 0.66
SHKBP1-218ENST00000598907 DPY19L2Q6NUT2 758 aa19.19■□□□□ 0.66
SHKBP1-218ENST00000598907 AFDNP55196 1824 aaKnown RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms