RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 LINC00116Q8NCU8 138 aa18.57■□□□□ 0.56
TRIM28-211ENST00000597968 UBR3Q6ZT12 1888 aa18.56■□□□□ 0.56
TRIM28-211ENST00000597968 ADRA2BP18089 450 aa18.56■□□□□ 0.56
TRIM28-211ENST00000597968 RC3H1Q5TC82 1133 aaKnown RBP18.56■□□□□ 0.56
TRIM28-211ENST00000597968 C1orf141Q5JVX7 400 aa18.55■□□□□ 0.56
TRIM28-211ENST00000597968 MSL1Q68DK7 614 aa18.55■□□□□ 0.56
TRIM28-211ENST00000597968 ITPK1Q13572 414 aa18.54■□□□□ 0.56
TRIM28-211ENST00000597968 AMER1Q5JTC6 1135 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-211ENST00000597968 ZNF530Q6P9A1 599 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-211ENST00000597968 GNPATO15228 680 aa18.53■□□□□ 0.56
TRIM28-211ENST00000597968 PHF14O94880 888 aa18.53■□□□□ 0.56
TRIM28-211ENST00000597968 MTHFSP49914 203 aa18.53■□□□□ 0.56
TRIM28-211ENST00000597968 CABP4P57796 275 aa18.53■□□□□ 0.56
TRIM28-211ENST00000597968 PELP1Q8IZL8 1130 aaKnown RBP18.53■□□□□ 0.56
TRIM28-211ENST00000597968 RTCBQ9Y3I0 505 aaKnown RBP18.53■□□□□ 0.56
TRIM28-211ENST00000597968 CNTNAP4Q9C0A0 1308 aa18.52■□□□□ 0.56
TRIM28-211ENST00000597968 IL13P35225 146 aa18.52■□□□□ 0.56
TRIM28-211ENST00000597968 TRAPPC3LQ5T215 181 aa18.52■□□□□ 0.56
TRIM28-211ENST00000597968 AMIGO3Q86WK7 504 aa18.52■□□□□ 0.56
TRIM28-211ENST00000597968 KIF7Q2M1P5 1343 aa18.51■□□□□ 0.55
TRIM28-211ENST00000597968 KDM6AO15550 1401 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-211ENST00000597968 YBX3P16989 372 aaKnown RBP eCLIP18.51■□□□□ 0.552e-32■□□□□ 9.7
TRIM28-211ENST00000597968 SULT6B1Q6IMI4 303 aa18.51■□□□□ 0.55
TRIM28-211ENST00000597968 NLGN1Q8N2Q7 840 aa18.51■□□□□ 0.55
TRIM28-211ENST00000597968 PER1O15534 1290 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-211ENST00000597968 AKAP4Q5JQC9 854 aa18.49■□□□□ 0.55
TRIM28-211ENST00000597968 NPC1L1Q9UHC9 1359 aa18.49■□□□□ 0.55
TRIM28-211ENST00000597968 RPS6KA4O75676 772 aa18.48■□□□□ 0.55
TRIM28-211ENST00000597968 C1QTNF8P60827 252 aa18.48■□□□□ 0.55
TRIM28-211ENST00000597968 AEBP1Q8IUX7 1158 aa18.48■□□□□ 0.55
TRIM28-211ENST00000597968 SLC4A9Q96Q91 983 aa18.48■□□□□ 0.55
TRIM28-211ENST00000597968 RBM42Q9BTD8 480 aaKnown RBP18.48■□□□□ 0.55
TRIM28-211ENST00000597968 TGFB2P61812 414 aa18.47■□□□□ 0.55
TRIM28-211ENST00000597968 CICQ96RK0 1608 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-211ENST00000597968 NFATC2IPQ8NCF5 419 aa18.46■□□□□ 0.55
TRIM28-211ENST00000597968 GIGYF1O75420 1035 aaPredicted RBP18.45■□□□□ 0.54
TRIM28-211ENST00000597968 RFC4P35249 363 aa18.45■□□□□ 0.54
TRIM28-211ENST00000597968 ARHGEF1Q92888 912 aaKnown RBP18.45■□□□□ 0.54
TRIM28-211ENST00000597968 COL5A3P25940 1745 aaPredicted RBP18.45■□□□□ 0.54
TRIM28-211ENST00000597968 MMP10P09238 476 aa18.44■□□□□ 0.54
TRIM28-211ENST00000597968 DIAPH1O60610 1272 aaKnown RBP18.43■□□□□ 0.54
TRIM28-211ENST00000597968 SLC52A2Q9HAB3 445 aa18.43■□□□□ 0.54
TRIM28-211ENST00000597968 GYS1P13807 737 aa18.42■□□□□ 0.54
TRIM28-211ENST00000597968 SMIM5Q71RC9 77 aa18.42■□□□□ 0.54
TRIM28-211ENST00000597968 CCDC87Q9NVE4 849 aa18.42■□□□□ 0.54
TRIM28-211ENST00000597968 MRC1P22897 1456 aa18.41■□□□□ 0.54
TRIM28-211ENST00000597968 PTCD1O75127 700 aaKnown RBP18.41■□□□□ 0.54
TRIM28-211ENST00000597968 ADCY9O60503 1353 aa18.41■□□□□ 0.54
TRIM28-211ENST00000597968 SCN11AQ9UI33 1791 aa18.4■□□□□ 0.54
TRIM28-211ENST00000597968 CRKLP46109 303 aaKnown RBP18.4■□□□□ 0.54
TRIM28-211ENST00000597968 PARP3Q9Y6F1 533 aa18.4■□□□□ 0.54
TRIM28-211ENST00000597968 C10orf71Q711Q0 1435 aa18.4■□□□□ 0.54
TRIM28-211ENST00000597968 KIF13BQ9NQT8 1826 aa18.39■□□□□ 0.54
TRIM28-211ENST00000597968 VSIG10Q8N0Z9 540 aa18.39■□□□□ 0.53
TRIM28-211ENST00000597968 RNMTO43148 476 aaKnown RBP18.38■□□□□ 0.53
TRIM28-211ENST00000597968 ATP10DQ9P241 1426 aa18.38■□□□□ 0.53
TRIM28-211ENST00000597968 PXDNLA1KZ92 1463 aa18.38■□□□□ 0.53
TRIM28-211ENST00000597968 CC2D1BQ5T0F9 858 aaKnown RBP18.37■□□□□ 0.53
TRIM28-211ENST00000597968 USP42Q9H9J4 1324 aaKnown RBP18.37■□□□□ 0.53
TRIM28-211ENST00000597968 ADAMTS7Q9UKP4 1686 aa18.37■□□□□ 0.53
TRIM28-211ENST00000597968 HMOX1P09601 288 aa18.36■□□□□ 0.53
TRIM28-211ENST00000597968 C4AP0C0L4 1744 aa18.36■□□□□ 0.53
TRIM28-211ENST00000597968 GPBP1L1Q9HC44 474 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-211ENST00000597968 SENP3-EIF4A1A0A087X0R7 540 aa18.35■□□□□ 0.53
TRIM28-211ENST00000597968 MTHFSDQ2M296 383 aaKnown RBP18.35■□□□□ 0.53
TRIM28-211ENST00000597968 INTS5Q6P9B9 1019 aaKnown RBP18.35■□□□□ 0.53
TRIM28-211ENST00000597968 LGR6Q9HBX8 967 aa18.35■□□□□ 0.53
TRIM28-211ENST00000597968 MYH14Q7Z406 1995 aaKnown RBP18.35■□□□□ 0.53
TRIM28-211ENST00000597968 GAS2L2Q8NHY3 880 aa18.34■□□□□ 0.53
TRIM28-211ENST00000597968 TJP1Q07157 1748 aa18.34■□□□□ 0.53
TRIM28-211ENST00000597968 ZPR1O75312 459 aa18.33■□□□□ 0.52
TRIM28-211ENST00000597968 COL3A1P02461 1466 aaPredicted RBP18.33■□□□□ 0.52
TRIM28-211ENST00000597968 SOS1Q07889 1333 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-211ENST00000597968 CYP19A1P11511 503 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-211ENST00000597968 KIAA1551Q9HCM1 1747 aa18.32■□□□□ 0.52
TRIM28-211ENST00000597968 TM4SF1P30408 202 aa18.31■□□□□ 0.52
TRIM28-211ENST00000597968 DNAJC10Q8IXB1 793 aa18.31■□□□□ 0.52
TRIM28-211ENST00000597968 CFAP53Q96M91 514 aa18.31■□□□□ 0.52
TRIM28-211ENST00000597968 TEX13AQ9BXU3 409 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-211ENST00000597968 KCPQ6ZWJ8 1503 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 A0A0G2JLW4 131 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 GNAT3A8MTJ3 354 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 FKBP8Q14318 412 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 TTC5Q8N0Z6 440 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 PIM2Q9P1W9 311 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 NARFQ9UHQ1 456 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 BCS1LQ9Y276 419 aa18.3■□□□□ 0.52
TRIM28-211ENST00000597968 STARD3NLO95772 234 aa18.29■□□□□ 0.52
TRIM28-211ENST00000597968 DPEP1P16444 411 aa18.29■□□□□ 0.52
TRIM28-211ENST00000597968 POLRMTO00411 1230 aaKnown RBP18.28■□□□□ 0.52
TRIM28-211ENST00000597968 U2SURPO15042 1029 aaKnown RBP18.28■□□□□ 0.52
TRIM28-211ENST00000597968 KCNA3P22001 575 aa18.28■□□□□ 0.52
TRIM28-211ENST00000597968 TEFQ10587 303 aa18.28■□□□□ 0.52
TRIM28-211ENST00000597968 SLC39A6Q13433 755 aa18.28■□□□□ 0.52
TRIM28-211ENST00000597968 SRP68Q9UHB9 627 aaKnown RBP18.28■□□□□ 0.52
TRIM28-211ENST00000597968 NUDCQ9Y266 331 aa18.28■□□□□ 0.52
TRIM28-211ENST00000597968 COL15A1P39059 1388 aa18.28■□□□□ 0.52
TRIM28-211ENST00000597968 A0A087WZG4 1122 aa18.27■□□□□ 0.52
TRIM28-211ENST00000597968 FCHSD2O94868 740 aa18.27■□□□□ 0.52
TRIM28-211ENST00000597968 DDR1Q08345 913 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms