RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SOX12O15370 315 aa12.7□□□□□ -0.38
TRIM28-208ENST00000597172 MTHFSP49914 203 aa12.7□□□□□ -0.38
TRIM28-208ENST00000597172 KCNH5Q8NCM2 988 aa12.7□□□□□ -0.38
TRIM28-208ENST00000597172 MKRN1Q9UHC7 482 aaKnown RBP12.7□□□□□ -0.38
TRIM28-208ENST00000597172 LY75O60449 1722 aa12.7□□□□□ -0.38
TRIM28-208ENST00000597172 ANKRD26Q9UPS8 1709 aa12.7□□□□□ -0.38
TRIM28-208ENST00000597172 PXDNLA1KZ92 1463 aa12.7□□□□□ -0.38
TRIM28-208ENST00000597172 HMGB2P26583 209 aaKnown RBP12.69□□□□□ -0.38
TRIM28-208ENST00000597172 LBX1P52954 281 aa12.69□□□□□ -0.38
TRIM28-208ENST00000597172 RRS1Q15050 365 aaKnown RBP12.69□□□□□ -0.38
TRIM28-208ENST00000597172 USP54Q70EL1 1684 aa12.69□□□□□ -0.38
TRIM28-208ENST00000597172 A0A0G2JLW4 131 aa12.68□□□□□ -0.38
TRIM28-208ENST00000597172 FCHSD2O94868 740 aa12.68□□□□□ -0.38
TRIM28-208ENST00000597172 TGFB2P61812 414 aa12.68□□□□□ -0.38
TRIM28-208ENST00000597172 EMILIN1Q9Y6C2 1016 aa12.68□□□□□ -0.38
TRIM28-208ENST00000597172 SMIM5Q71RC9 77 aa12.67□□□□□ -0.38
TRIM28-208ENST00000597172 MRS2Q9HD23 443 aa12.67□□□□□ -0.38
TRIM28-208ENST00000597172 RNF181Q9P0P0 153 aa12.67□□□□□ -0.38
TRIM28-208ENST00000597172 ERBB3P21860 1342 aa12.66□□□□□ -0.38
TRIM28-208ENST00000597172 VEGFAP15692 232 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-208ENST00000597172 PNISRQ8TF01 805 aaKnown RBP12.66□□□□□ -0.38
TRIM28-208ENST00000597172 CREBZFQ9NS37 354 aa12.66□□□□□ -0.38
TRIM28-208ENST00000597172 TNRC6CQ9HCJ0 1690 aaKnown RBP12.66□□□□□ -0.38
TRIM28-208ENST00000597172 MAP3K19Q56UN5 1328 aa12.65□□□□□ -0.38
TRIM28-208ENST00000597172 NFAT5O94916 1531 aa12.65□□□□□ -0.38
TRIM28-208ENST00000597172 INSRP06213 1382 aa12.65□□□□□ -0.38
TRIM28-208ENST00000597172 SMG6Q86US8 1419 aaKnown RBP12.64□□□□□ -0.39
TRIM28-208ENST00000597172 PPM1GO15355 546 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-208ENST00000597172 WBP1LQ9NX94 342 aa12.64□□□□□ -0.39
TRIM28-208ENST00000597172 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.63□□□□□ -0.39
TRIM28-208ENST00000597172 PHF14O94880 888 aa12.63□□□□□ -0.39
TRIM28-208ENST00000597172 DPEP1P16444 411 aa12.63□□□□□ -0.39
TRIM28-208ENST00000597172 HSP90AB2PQ58FF8 381 aa12.63□□□□□ -0.39
TRIM28-208ENST00000597172 AMIGO3Q86WK7 504 aa12.63□□□□□ -0.39
TRIM28-208ENST00000597172 AK7Q96M32 723 aa12.63□□□□□ -0.39
TRIM28-208ENST00000597172 N4BP2Q86UW6 1770 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-208ENST00000597172 PKD1L3Q7Z443 1732 aa12.62□□□□□ -0.39
TRIM28-208ENST00000597172 MAP2P11137 1827 aaKnown RBP12.62□□□□□ -0.39
TRIM28-208ENST00000597172 HOXC9P31274 260 aa12.62□□□□□ -0.39
TRIM28-208ENST00000597172 IP6K1Q92551 441 aa12.62□□□□□ -0.39
TRIM28-208ENST00000597172 COL3A1P02461 1466 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-208ENST00000597172 CNTNAP1P78357 1384 aa12.61□□□□□ -0.39
TRIM28-208ENST00000597172 MMP10P09238 476 aa12.61□□□□□ -0.39
TRIM28-208ENST00000597172 HSPA8P11142 646 aaKnown RBP12.61□□□□□ -0.39
TRIM28-208ENST00000597172 IL13P35225 146 aa12.61□□□□□ -0.39
TRIM28-208ENST00000597172 AMPHP49418 695 aa12.61□□□□□ -0.39
TRIM28-208ENST00000597172 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
TRIM28-208ENST00000597172 CFAP44Q96MT7 982 aa12.61□□□□□ -0.39
TRIM28-208ENST00000597172 TNRC18O15417 2968 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-208ENST00000597172 KIF24Q5T7B8 1368 aa12.6□□□□□ -0.39
TRIM28-208ENST00000597172 DIAPH1O60610 1272 aaKnown RBP12.6□□□□□ -0.39
TRIM28-208ENST00000597172 C5P01031 1676 aa12.6□□□□□ -0.39
TRIM28-208ENST00000597172 FLT4P35916 1363 aa12.59□□□□□ -0.39
TRIM28-208ENST00000597172 GLTPD2A6NH11 291 aa12.59□□□□□ -0.39
TRIM28-208ENST00000597172 VEGFBP49765 207 aa12.59□□□□□ -0.39
TRIM28-208ENST00000597172 EIF4A2Q14240 407 aaKnown RBP12.59□□□□□ -0.39
TRIM28-208ENST00000597172 FAM9BQ8IZU0 186 aa12.59□□□□□ -0.39
TRIM28-208ENST00000597172 ANKRD24Q8TF21 1146 aa12.59□□□□□ -0.39
TRIM28-208ENST00000597172 ADAMTS8Q9UP79 889 aa12.59□□□□□ -0.39
TRIM28-208ENST00000597172 KIF13BQ9NQT8 1826 aa12.58□□□□□ -0.4
TRIM28-208ENST00000597172 SSFA2P28290 1259 aa12.58□□□□□ -0.4
TRIM28-208ENST00000597172 DOT1LQ8TEK3 1739 aa12.58□□□□□ -0.4
TRIM28-208ENST00000597172 DCAF5Q96JK2 942 aa12.58□□□□□ -0.4
TRIM28-208ENST00000597172 KIAA1551Q9HCM1 1747 aa12.58□□□□□ -0.4
TRIM28-208ENST00000597172 ZC3H4Q9UPT8 1303 aaKnown RBP12.58□□□□□ -0.4
TRIM28-208ENST00000597172 RTL1A6NKG5 1358 aa12.57□□□□□ -0.4
TRIM28-208ENST00000597172 SBF1O95248 1867 aa12.57□□□□□ -0.4
TRIM28-208ENST00000597172 PIM2Q9P1W9 311 aa12.57□□□□□ -0.4
TRIM28-208ENST00000597172 TAF1LQ8IZX4 1826 aa12.56□□□□□ -0.4
TRIM28-208ENST00000597172 ARFGEF1Q9Y6D6 1849 aa12.56□□□□□ -0.4
TRIM28-208ENST00000597172 KCNA3P22001 575 aa12.56□□□□□ -0.4
TRIM28-208ENST00000597172 DALRD3Q5D0E6 543 aaKnown RBP12.56□□□□□ -0.4
TRIM28-208ENST00000597172 WDR43Q15061 677 aaKnown RBP eCLIP12.55□□□□□ -0.42e-6■■□□□ 11.4
TRIM28-208ENST00000597172 CHADLQ6NUI6 762 aa12.55□□□□□ -0.4
TRIM28-208ENST00000597172 ZCRB1Q8TBF4 217 aaKnown RBP12.55□□□□□ -0.4
TRIM28-208ENST00000597172 LTV1Q96GA3 475 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-208ENST00000597172 CCDC87Q9NVE4 849 aa12.55□□□□□ -0.4
TRIM28-208ENST00000597172 NUDCQ9Y266 331 aa12.55□□□□□ -0.4
TRIM28-208ENST00000597172 LTN1O94822 1766 aa12.55□□□□□ -0.4
TRIM28-208ENST00000597172 UBR3Q6ZT12 1888 aa12.55□□□□□ -0.4
TRIM28-208ENST00000597172 PALLDQ8WX93 1383 aa12.55□□□□□ -0.4
TRIM28-208ENST00000597172 C4BP0C0L5 1744 aa12.54□□□□□ -0.4
TRIM28-208ENST00000597172 U2SURPO15042 1029 aaKnown RBP12.54□□□□□ -0.4
TRIM28-208ENST00000597172 U2AF1L5P0DN76 240 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-208ENST00000597172 U2AF1Q01081 240 aaKnown RBP eCLIP12.54□□□□□ -0.4
TRIM28-208ENST00000597172 EYA1Q99502 592 aa12.54□□□□□ -0.4
TRIM28-208ENST00000597172 BRCA1P38398 1863 aaKnown RBP12.54□□□□□ -0.4
TRIM28-208ENST00000597172 POTECB2RU33 542 aa12.53□□□□□ -0.4
TRIM28-208ENST00000597172 MAP2K1Q02750 393 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-208ENST00000597172 NBPF6Q5VWK0 638 aa12.53□□□□□ -0.4
TRIM28-208ENST00000597172 NBPF4Q96M43 638 aa12.53□□□□□ -0.4
TRIM28-208ENST00000597172 TOGARAM1Q9Y4F4 1720 aa12.53□□□□□ -0.4
TRIM28-208ENST00000597172 PRPF38BQ5VTL8 546 aaKnown RBP12.52□□□□□ -0.41
TRIM28-208ENST00000597172 NLGN1Q8N2Q7 840 aa12.52□□□□□ -0.41
TRIM28-208ENST00000597172 PLEKHF1Q96S99 279 aa12.52□□□□□ -0.41
TRIM28-208ENST00000597172 HMOX1P09601 288 aa12.51□□□□□ -0.41
TRIM28-208ENST00000597172 LMNB1P20700 586 aa12.51□□□□□ -0.41
TRIM28-208ENST00000597172 AEBP1Q8IUX7 1158 aa12.51□□□□□ -0.41
TRIM28-208ENST00000597172 CCDC146Q8IYE0 955 aa12.51□□□□□ -0.41
TRIM28-208ENST00000597172 SMARCC1Q92922 1105 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms