RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 SBF1O95248 1867 aa21.9■■□□□ 1.1
LIG1-214ENST00000597146 PLEKHG2Q9H7P9 1386 aa21.9■■□□□ 1.1
LIG1-214ENST00000597146 NEUROD1Q13562 356 aa21.9■■□□□ 1.1
LIG1-214ENST00000597146 C9orf131Q5VYM1 1079 aa21.9■■□□□ 1.1
LIG1-214ENST00000597146 FCHSD2O94868 740 aa21.89■■□□□ 1.09
LIG1-214ENST00000597146 DPEP1P16444 411 aa21.89■■□□□ 1.09
LIG1-214ENST00000597146 TGFB2P61812 414 aa21.89■■□□□ 1.09
LIG1-214ENST00000597146 FSTL1Q12841 308 aa21.89■■□□□ 1.09
LIG1-214ENST00000597146 COL5A3P25940 1745 aaPredicted RBP21.88■■□□□ 1.09
LIG1-214ENST00000597146 HSP90AB2PQ58FF8 381 aa21.87■■□□□ 1.09
LIG1-214ENST00000597146 INSRP06213 1382 aa21.87■■□□□ 1.09
LIG1-214ENST00000597146 GGNBP2Q9H3C7 697 aa21.85■■□□□ 1.09
LIG1-214ENST00000597146 ASAP1Q9ULH1 1129 aa21.85■■□□□ 1.09
LIG1-214ENST00000597146 ATP6V1AP38606 617 aa21.84■■□□□ 1.09
LIG1-214ENST00000597146 PUS7Q96PZ0 661 aaKnown RBP21.84■■□□□ 1.09
LIG1-214ENST00000597146 FLT4P35916 1363 aa21.84■■□□□ 1.09
LIG1-214ENST00000597146 KDM2BQ8NHM5 1336 aa21.83■■□□□ 1.09
LIG1-214ENST00000597146 RRAGCQ9HB90 399 aa21.83■■□□□ 1.09
LIG1-214ENST00000597146 HSPA1AP0DMV8 641 aaKnown RBP21.82■■□□□ 1.08
LIG1-214ENST00000597146 HSPA1BP0DMV9 641 aaKnown RBP21.82■■□□□ 1.08
LIG1-214ENST00000597146 CCDC87Q9NVE4 849 aa21.82■■□□□ 1.08
LIG1-214ENST00000597146 TMOD3Q9NYL9 352 aa21.82■■□□□ 1.08
LIG1-214ENST00000597146 RNF181Q9P0P0 153 aa21.82■■□□□ 1.08
LIG1-214ENST00000597146 KDRP35968 1356 aa21.82■■□□□ 1.08
LIG1-214ENST00000597146 ZNF831Q5JPB2 1677 aa21.82■■□□□ 1.08
LIG1-214ENST00000597146 NCAPD2Q15021 1401 aa21.81■■□□□ 1.08
LIG1-214ENST00000597146 KCNA3P22001 575 aa21.81■■□□□ 1.08
LIG1-214ENST00000597146 TMF1P82094 1093 aa21.81■■□□□ 1.08
LIG1-214ENST00000597146 NKX1-1Q15270 411 aaPredicted RBP21.81■■□□□ 1.08
LIG1-214ENST00000597146 MYH14Q7Z406 1995 aaKnown RBP21.81■■□□□ 1.08
LIG1-214ENST00000597146 FYB1O15117 783 aa21.8■■□□□ 1.08
LIG1-214ENST00000597146 ANKRD26Q9UPS8 1709 aa21.8■■□□□ 1.08
LIG1-214ENST00000597146 TRAPPC3LQ5T215 181 aa21.79■■□□□ 1.08
LIG1-214ENST00000597146 NLGN1Q8N2Q7 840 aa21.79■■□□□ 1.08
LIG1-214ENST00000597146 TIAM2Q8IVF5 1701 aa21.78■■□□□ 1.08
LIG1-214ENST00000597146 GYS1P13807 737 aa21.78■■□□□ 1.08
LIG1-214ENST00000597146 SMC1BQ8NDV3 1235 aa21.78■■□□□ 1.08
LIG1-214ENST00000597146 DCAF5Q96JK2 942 aa21.78■■□□□ 1.08
LIG1-214ENST00000597146 ATG3Q9NT62 314 aa21.78■■□□□ 1.08
LIG1-214ENST00000597146 RTCBQ9Y3I0 505 aaKnown RBP21.78■■□□□ 1.08
LIG1-214ENST00000597146 TESK2Q96S53 571 aa21.77■■□□□ 1.08
LIG1-214ENST00000597146 CCDC88AQ3V6T2 1871 aa21.76■■□□□ 1.07
LIG1-214ENST00000597146 ARHGEF1Q92888 912 aaKnown RBP21.76■■□□□ 1.07
LIG1-214ENST00000597146 PARP3Q9Y6F1 533 aa21.76■■□□□ 1.07
LIG1-214ENST00000597146 KIF24Q5T7B8 1368 aa21.75■■□□□ 1.07
LIG1-214ENST00000597146 SLC4A9Q96Q91 983 aa21.75■■□□□ 1.07
LIG1-214ENST00000597146 PIM2Q9P1W9 311 aa21.75■■□□□ 1.07
LIG1-214ENST00000597146 SPG7Q9UQ90 795 aa21.75■■□□□ 1.07
LIG1-214ENST00000597146 EMILIN1Q9Y6C2 1016 aa21.74■■□□□ 1.07
LIG1-214ENST00000597146 DALRD3Q5D0E6 543 aaKnown RBP21.73■■□□□ 1.07
LIG1-214ENST00000597146 CHRNA5P30532 468 aa21.72■■□□□ 1.07
LIG1-214ENST00000597146 RFC4P35249 363 aa21.72■■□□□ 1.07
LIG1-214ENST00000597146 PHKG2P15735 406 aa21.71■■□□□ 1.07
LIG1-214ENST00000597146 ADRA2BP18089 450 aa21.71■■□□□ 1.07
LIG1-214ENST00000597146 RASSF7Q02833 373 aa21.71■■□□□ 1.07
LIG1-214ENST00000597146 DLEC1Q9Y238 1755 aa21.7■■□□□ 1.06
LIG1-214ENST00000597146 ST20-MTHFSA0A0A6YYL1 179 aa21.7■■□□□ 1.06
LIG1-214ENST00000597146 RBM42Q9BTD8 480 aaKnown RBP21.7■■□□□ 1.06
LIG1-214ENST00000597146 CNTNAP4Q9C0A0 1308 aa21.7■■□□□ 1.06
LIG1-214ENST00000597146 DDR1Q08345 913 aa21.69■■□□□ 1.06
LIG1-214ENST00000597146 TONSLQ96HA7 1378 aa21.69■■□□□ 1.06
LIG1-214ENST00000597146 ADAMTS7Q9UKP4 1686 aa21.69■■□□□ 1.06
LIG1-214ENST00000597146 TJP1Q07157 1748 aa21.69■■□□□ 1.06
LIG1-214ENST00000597146 AFDNP55196 1824 aaKnown RBP21.69■■□□□ 1.06
LIG1-214ENST00000597146 RPS6KA4O75676 772 aa21.68■■□□□ 1.06
LIG1-214ENST00000597146 IFNL2Q8IZJ0 200 aa21.68■■□□□ 1.06
LIG1-214ENST00000597146 SRP68Q9UHB9 627 aaKnown RBP21.68■■□□□ 1.06
LIG1-214ENST00000597146 KDM6AO15550 1401 aaPredicted RBP21.68■■□□□ 1.06
LIG1-214ENST00000597146 PPM1GO15355 546 aaPredicted RBP21.67■■□□□ 1.06
LIG1-214ENST00000597146 RC3H1Q5TC82 1133 aaKnown RBP21.67■■□□□ 1.06
LIG1-214ENST00000597146 FKBP8Q14318 412 aa21.66■■□□□ 1.06
LIG1-214ENST00000597146 EYA1Q99502 592 aa21.66■■□□□ 1.06
LIG1-214ENST00000597146 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.66■■□□□ 1.06
LIG1-214ENST00000597146 SLC34A2O95436 690 aa21.65■■□□□ 1.06
LIG1-214ENST00000597146 ZC3H4Q9UPT8 1303 aaKnown RBP21.64■■□□□ 1.05
LIG1-214ENST00000597146 USP42Q9H9J4 1324 aaKnown RBP21.63■■□□□ 1.05
LIG1-214ENST00000597146 VEGFAP15692 232 aaPredicted RBP21.63■■□□□ 1.05
LIG1-214ENST00000597146 GLTPD2A6NH11 291 aa21.62■■□□□ 1.05
LIG1-214ENST00000597146 NRXN2Q9P2S2 1712 aa21.6■■□□□ 1.05
LIG1-214ENST00000597146 WASHC2AQ641Q2 1341 aa21.59■■□□□ 1.05
LIG1-214ENST00000597146 DICER1Q9UPY3 1922 aaKnown RBP21.59■■□□□ 1.05
LIG1-214ENST00000597146 POLRMTO00411 1230 aaKnown RBP21.59■■□□□ 1.05
LIG1-214ENST00000597146 LMNB1P20700 586 aa21.59■■□□□ 1.05
LIG1-214ENST00000597146 CRKLP46109 303 aaKnown RBP21.59■■□□□ 1.05
LIG1-214ENST00000597146 MKRN1Q9UHC7 482 aaKnown RBP21.59■■□□□ 1.05
LIG1-214ENST00000597146 POTECB2RU33 542 aa21.57■■□□□ 1.04
LIG1-214ENST00000597146 ERVV-2B6SEH9 535 aa21.57■■□□□ 1.04
LIG1-214ENST00000597146 FOXN1O15353 648 aa21.56■■□□□ 1.04
LIG1-214ENST00000597146 PTCD1O75127 700 aaKnown RBP21.56■■□□□ 1.04
LIG1-214ENST00000597146 TRIM26Q12899 539 aaPredicted RBP21.56■■□□□ 1.04
LIG1-214ENST00000597146 CARD14Q9BXL6 1004 aa21.56■■□□□ 1.04
LIG1-214ENST00000597146 TM4SF1P30408 202 aa21.54■■□□□ 1.04
LIG1-214ENST00000597146 SLC24A1O60721 1099 aa21.53■■□□□ 1.04
LIG1-214ENST00000597146 CABP4P57796 275 aa21.53■■□□□ 1.04
LIG1-214ENST00000597146 EIF4A2Q14240 407 aaKnown RBP21.53■■□□□ 1.04
LIG1-214ENST00000597146 FER1L6Q2WGJ9 1857 aa21.53■■□□□ 1.04
LIG1-214ENST00000597146 VIRMAQ69YN4 1812 aaKnown RBP21.52■■□□□ 1.04
LIG1-214ENST00000597146 ANKRD31Q8N7Z5 1873 aa21.52■■□□□ 1.04
LIG1-214ENST00000597146 SCN11AQ9UI33 1791 aa21.52■■□□□ 1.04
LIG1-214ENST00000597146 NFKBIEO00221 500 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms