RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CNGB1Q14028 1251 aaPredicted RBP17.72■□□□□ 0.43
LIG1-212ENST00000596549 LINC00116Q8NCU8 138 aa17.72■□□□□ 0.43
LIG1-212ENST00000596549 DCAF5Q96JK2 942 aa17.72■□□□□ 0.43
LIG1-212ENST00000596549 ARXQ96QS3 562 aa17.72■□□□□ 0.43
LIG1-212ENST00000596549 ATG3Q9NT62 314 aa17.72■□□□□ 0.43
LIG1-212ENST00000596549 ITPK1Q13572 414 aa17.71■□□□□ 0.43
LIG1-212ENST00000596549 SYT17Q9BSW7 474 aa17.71■□□□□ 0.43
LIG1-212ENST00000596549 CHD4Q14839 1912 aa17.7■□□□□ 0.42
LIG1-212ENST00000596549 ERVV-2B6SEH9 535 aa17.7■□□□□ 0.42
LIG1-212ENST00000596549 HSP90AB1P08238 724 aaKnown RBP17.7■□□□□ 0.42
LIG1-212ENST00000596549 HMOX1P09601 288 aa17.7■□□□□ 0.42
LIG1-212ENST00000596549 DIAPH1O60610 1272 aaKnown RBP17.69■□□□□ 0.42
LIG1-212ENST00000596549 SMIM5Q71RC9 77 aa17.69■□□□□ 0.42
LIG1-212ENST00000596549 SLC4A9Q96Q91 983 aa17.69■□□□□ 0.42
LIG1-212ENST00000596549 KCPQ6ZWJ8 1503 aa17.68■□□□□ 0.42
LIG1-212ENST00000596549 C1orf141Q5JVX7 400 aa17.68■□□□□ 0.42
LIG1-212ENST00000596549 AK7Q96M32 723 aa17.68■□□□□ 0.42
LIG1-212ENST00000596549 KIAA1551Q9HCM1 1747 aa17.68■□□□□ 0.42
LIG1-212ENST00000596549 KIF13BQ9NQT8 1826 aa17.68■□□□□ 0.42
LIG1-212ENST00000596549 MSL1Q68DK7 614 aa17.67■□□□□ 0.42
LIG1-212ENST00000596549 MSH5O43196 834 aa17.66■□□□□ 0.42
LIG1-212ENST00000596549 PHF14O94880 888 aa17.66■□□□□ 0.42
LIG1-212ENST00000596549 ATP6V1AP38606 617 aa17.66■□□□□ 0.42
LIG1-212ENST00000596549 POLD1P28340 1107 aa17.65■□□□□ 0.42
LIG1-212ENST00000596549 CABP4P57796 275 aa17.65■□□□□ 0.42
LIG1-212ENST00000596549 AKAP4Q5JQC9 854 aa17.65■□□□□ 0.42
LIG1-212ENST00000596549 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.64■□□□□ 0.41
LIG1-212ENST00000596549 MTHFSDQ2M296 383 aaKnown RBP17.64■□□□□ 0.41
LIG1-212ENST00000596549 DLG5Q8TDM6 1919 aa17.64■□□□□ 0.41
LIG1-212ENST00000596549 GNPATO15228 680 aa17.63■□□□□ 0.41
LIG1-212ENST00000596549 SSFA2P28290 1259 aa17.63■□□□□ 0.41
LIG1-212ENST00000596549 FLAD1Q8NFF5 587 aa17.63■□□□□ 0.41
LIG1-212ENST00000596549 UTRNP46939 3433 aa17.62■□□□□ 0.41
LIG1-212ENST00000596549 HMGB2P26583 209 aaKnown RBP17.62■□□□□ 0.41
LIG1-212ENST00000596549 KLHL34Q8N239 644 aa17.62■□□□□ 0.41
LIG1-212ENST00000596549 NFATC2IPQ8NCF5 419 aa17.62■□□□□ 0.41
LIG1-212ENST00000596549 NLGN2Q8NFZ4 835 aa17.62■□□□□ 0.41
LIG1-212ENST00000596549 RBM42Q9BTD8 480 aaKnown RBP17.62■□□□□ 0.41
LIG1-212ENST00000596549 CNTNAP4Q9C0A0 1308 aa17.62■□□□□ 0.41
LIG1-212ENST00000596549 U2SURPO15042 1029 aaKnown RBP17.61■□□□□ 0.41
LIG1-212ENST00000596549 PPP2R1AP30153 589 aa17.61■□□□□ 0.41
LIG1-212ENST00000596549 LGR6Q9HBX8 967 aa17.61■□□□□ 0.41
LIG1-212ENST00000596549 RNMTO43148 476 aaKnown RBP17.6■□□□□ 0.41
LIG1-212ENST00000596549 SLC52A2Q9HAB3 445 aa17.6■□□□□ 0.41
LIG1-212ENST00000596549 BRCA1P38398 1863 aaKnown RBP17.59■□□□□ 0.41
LIG1-212ENST00000596549 N4BP2Q86UW6 1770 aaPredicted RBP17.59■□□□□ 0.41
LIG1-212ENST00000596549 PTCD1O75127 700 aaKnown RBP17.58■□□□□ 0.4
LIG1-212ENST00000596549 DCAF8L1A6NGE4 600 aa17.57■□□□□ 0.4
LIG1-212ENST00000596549 YY1P25490 414 aa17.57■□□□□ 0.4
LIG1-212ENST00000596549 RSPH6AQ9H0K4 717 aa17.57■□□□□ 0.4
LIG1-212ENST00000596549 SCN7AQ01118 1682 aa17.57■□□□□ 0.4
LIG1-212ENST00000596549 GOLGB1Q14789 3259 aaKnown RBP17.56■□□□□ 0.4
LIG1-212ENST00000596549 RC3H1Q5TC82 1133 aaKnown RBP17.56■□□□□ 0.4
LIG1-212ENST00000596549 SLC39A6Q13433 755 aa17.55■□□□□ 0.4
LIG1-212ENST00000596549 CFAP53Q96M91 514 aa17.55■□□□□ 0.4
LIG1-212ENST00000596549 RTCBQ9Y3I0 505 aaKnown RBP17.55■□□□□ 0.4
LIG1-212ENST00000596549 AFDNP55196 1824 aaKnown RBP17.54■□□□□ 0.4
LIG1-212ENST00000596549 PRKAR2BP31323 418 aa17.54■□□□□ 0.4
LIG1-212ENST00000596549 CRKLP46109 303 aaKnown RBP17.54■□□□□ 0.4
LIG1-212ENST00000596549 CEMIPQ8WUJ3 1361 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 LAMB4A4D0S4 1761 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 BCORQ6W2J9 1755 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 KDM3BQ7LBC6 1761 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 NRXN2Q9P2S2 1712 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 RPS6KA4O75676 772 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 GAS2L2Q8NHY3 880 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 PHACTR3Q96KR7 559 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 C10orf71Q711Q0 1435 aa17.53■□□□□ 0.4
LIG1-212ENST00000596549 ADRA2BP18089 450 aa17.52■□□□□ 0.4
LIG1-212ENST00000596549 DNAJC10Q8IXB1 793 aa17.52■□□□□ 0.4
LIG1-212ENST00000596549 IL17REQ8NFR9 667 aa17.52■□□□□ 0.4
LIG1-212ENST00000596549 ARHGEF1Q92888 912 aaKnown RBP17.52■□□□□ 0.4
LIG1-212ENST00000596549 GNAT3A8MTJ3 354 aa17.51■□□□□ 0.39
LIG1-212ENST00000596549 YBX3P16989 372 aaKnown RBP eCLIP17.51■□□□□ 0.39
LIG1-212ENST00000596549 TRAPPC3LQ5T215 181 aa17.51■□□□□ 0.39
LIG1-212ENST00000596549 CD2APQ9Y5K6 639 aa17.51■□□□□ 0.39
LIG1-212ENST00000596549 PXDNLA1KZ92 1463 aa17.5■□□□□ 0.39
LIG1-212ENST00000596549 GYS1P13807 737 aa17.5■□□□□ 0.39
LIG1-212ENST00000596549 INTS5Q6P9B9 1019 aaKnown RBP17.5■□□□□ 0.39
LIG1-212ENST00000596549 DLEC1Q9Y238 1755 aa17.5■□□□□ 0.39
LIG1-212ENST00000596549 MMP10P09238 476 aa17.49■□□□□ 0.39
LIG1-212ENST00000596549 U2AF1L5P0DN76 240 aaPredicted RBP17.49■□□□□ 0.39
LIG1-212ENST00000596549 U2AF1Q01081 240 aaKnown RBP eCLIP17.49■□□□□ 0.39
LIG1-212ENST00000596549 GPR162Q16538 588 aa17.49■□□□□ 0.39
LIG1-212ENST00000596549 PELP1Q8IZL8 1130 aaKnown RBP17.49■□□□□ 0.39
LIG1-212ENST00000596549 NUDCQ9Y266 331 aa17.49■□□□□ 0.39
LIG1-212ENST00000596549 ARFGEF1Q9Y6D6 1849 aa17.49■□□□□ 0.39
LIG1-212ENST00000596549 SOS1Q07889 1333 aaPredicted RBP17.48■□□□□ 0.39
LIG1-212ENST00000596549 USP42Q9H9J4 1324 aaKnown RBP17.48■□□□□ 0.39
LIG1-212ENST00000596549 CYP19A1P11511 503 aaPredicted RBP17.48■□□□□ 0.39
LIG1-212ENST00000596549 SRP68Q9UHB9 627 aaKnown RBP17.48■□□□□ 0.39
LIG1-212ENST00000596549 CCDC87Q9NVE4 849 aa17.47■□□□□ 0.39
LIG1-212ENST00000596549 ZBTB1Q9Y2K1 713 aa17.47■□□□□ 0.39
LIG1-212ENST00000596549 COL15A1P39059 1388 aa17.47■□□□□ 0.39
LIG1-212ENST00000596549 HEG1Q9ULI3 1381 aa17.47■□□□□ 0.39
LIG1-212ENST00000596549 RFC4P35249 363 aa17.46■□□□□ 0.39
LIG1-212ENST00000596549 TEFQ10587 303 aa17.46■□□□□ 0.39
LIG1-212ENST00000596549 FCHSD2O94868 740 aa17.45■□□□□ 0.38
LIG1-212ENST00000596549 ZNF790Q6PG37 636 aa17.45■□□□□ 0.38
LIG1-212ENST00000596549 VSIG10Q8N0Z9 540 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms