RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 KCPQ6ZWJ8 1503 aa17.87■□□□□ 0.45
SCAF1-202ENST00000595242 FCHSD2O94868 740 aa17.86■□□□□ 0.45
SCAF1-202ENST00000595242 KDM2BQ8NHM5 1336 aa17.86■□□□□ 0.45
SCAF1-202ENST00000595242 LOC102724428A0A0B4J2F2 783 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 GNPATO15228 680 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 CYP27B1O15528 508 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 DPEP1P16444 411 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 SIK1P57059 783 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 NEUROD1Q13562 356 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 PIGBQ92521 554 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 RRAGCQ9HB90 399 aa17.85■□□□□ 0.45
SCAF1-202ENST00000595242 SMG6Q86US8 1419 aaKnown RBP17.84■□□□□ 0.45
SCAF1-202ENST00000595242 RTL1A6NKG5 1358 aa17.84■□□□□ 0.45
SCAF1-202ENST00000595242 HSPA1AP0DMV8 641 aaKnown RBP17.84■□□□□ 0.45
SCAF1-202ENST00000595242 HSPA1BP0DMV9 641 aaKnown RBP17.84■□□□□ 0.45
SCAF1-202ENST00000595242 C4AP0C0L4 1744 aa17.84■□□□□ 0.45
SCAF1-202ENST00000595242 C10orf71Q711Q0 1435 aa17.83■□□□□ 0.45
SCAF1-202ENST00000595242 RRS1Q15050 365 aaKnown RBP17.83■□□□□ 0.44
SCAF1-202ENST00000595242 SMC1BQ8NDV3 1235 aa17.83■□□□□ 0.44
SCAF1-202ENST00000595242 CCDC88AQ3V6T2 1871 aa17.82■□□□□ 0.44
SCAF1-202ENST00000595242 ATP6V1AP38606 617 aa17.81■□□□□ 0.44
SCAF1-202ENST00000595242 ITPK1Q13572 414 aa17.81■□□□□ 0.44
SCAF1-202ENST00000595242 NLGN1Q8N2Q7 840 aa17.81■□□□□ 0.44
SCAF1-202ENST00000595242 CCDC87Q9NVE4 849 aa17.81■□□□□ 0.44
SCAF1-202ENST00000595242 TMF1P82094 1093 aa17.8■□□□□ 0.44
SCAF1-202ENST00000595242 KCNA3P22001 575 aa17.79■□□□□ 0.44
SCAF1-202ENST00000595242 TRAPPC3LQ5T215 181 aa17.79■□□□□ 0.44
SCAF1-202ENST00000595242 RNF181Q9P0P0 153 aa17.79■□□□□ 0.44
SCAF1-202ENST00000595242 SLC34A2O95436 690 aa17.78■□□□□ 0.44
SCAF1-202ENST00000595242 HSP90AB2PQ58FF8 381 aa17.78■□□□□ 0.44
SCAF1-202ENST00000595242 PUS7Q96PZ0 661 aaKnown RBP17.78■□□□□ 0.44
SCAF1-202ENST00000595242 PIM2Q9P1W9 311 aa17.78■□□□□ 0.44
SCAF1-202ENST00000595242 ASAP1Q9ULH1 1129 aa17.78■□□□□ 0.44
SCAF1-202ENST00000595242 NKX1-1Q15270 411 aaPredicted RBP17.77■□□□□ 0.44
SCAF1-202ENST00000595242 DCAF5Q96JK2 942 aa17.77■□□□□ 0.44
SCAF1-202ENST00000595242 TMOD3Q9NYL9 352 aa17.77■□□□□ 0.44
SCAF1-202ENST00000595242 MYH14Q7Z406 1995 aaKnown RBP17.77■□□□□ 0.43
SCAF1-202ENST00000595242 COL5A3P25940 1745 aaPredicted RBP17.76■□□□□ 0.43
SCAF1-202ENST00000595242 CARD11Q9BXL7 1154 aa17.76■□□□□ 0.43
SCAF1-202ENST00000595242 RTCBQ9Y3I0 505 aaKnown RBP17.76■□□□□ 0.43
SCAF1-202ENST00000595242 PARP3Q9Y6F1 533 aa17.76■□□□□ 0.43
SCAF1-202ENST00000595242 INSRP06213 1382 aa17.76■□□□□ 0.43
SCAF1-202ENST00000595242 DALRD3Q5D0E6 543 aaKnown RBP17.75■□□□□ 0.43
SCAF1-202ENST00000595242 ZNF831Q5JPB2 1677 aa17.74■□□□□ 0.43
SCAF1-202ENST00000595242 GYS1P13807 737 aa17.74■□□□□ 0.43
SCAF1-202ENST00000595242 ARHGEF1Q92888 912 aaKnown RBP17.74■□□□□ 0.43
SCAF1-202ENST00000595242 KIF20BQ96Q89 1820 aa17.73■□□□□ 0.43
SCAF1-202ENST00000595242 ATG3Q9NT62 314 aa17.73■□□□□ 0.43
SCAF1-202ENST00000595242 RFC4P35249 363 aa17.72■□□□□ 0.43
SCAF1-202ENST00000595242 GGNBP2Q9H3C7 697 aa17.72■□□□□ 0.43
SCAF1-202ENST00000595242 SPG7Q9UQ90 795 aa17.72■□□□□ 0.43
SCAF1-202ENST00000595242 FLT4P35916 1363 aa17.71■□□□□ 0.43
SCAF1-202ENST00000595242 FYB1O15117 783 aa17.71■□□□□ 0.43
SCAF1-202ENST00000595242 VEGFAP15692 232 aaPredicted RBP17.71■□□□□ 0.43
SCAF1-202ENST00000595242 ADRA2BP18089 450 aa17.71■□□□□ 0.43
SCAF1-202ENST00000595242 TIAM2Q8IVF5 1701 aa17.69■□□□□ 0.42
SCAF1-202ENST00000595242 ZC3H4Q9UPT8 1303 aaKnown RBP17.69■□□□□ 0.42
SCAF1-202ENST00000595242 KDRP35968 1356 aa17.68■□□□□ 0.42
SCAF1-202ENST00000595242 KIF24Q5T7B8 1368 aa17.68■□□□□ 0.42
SCAF1-202ENST00000595242 RC3H1Q5TC82 1133 aaKnown RBP17.68■□□□□ 0.42
SCAF1-202ENST00000595242 SLC4A9Q96Q91 983 aa17.68■□□□□ 0.42
SCAF1-202ENST00000595242 GLTPD2A6NH11 291 aa17.67■□□□□ 0.42
SCAF1-202ENST00000595242 RPS6KA4O75676 772 aa17.67■□□□□ 0.42
SCAF1-202ENST00000595242 CHRNA5P30532 468 aa17.67■□□□□ 0.42
SCAF1-202ENST00000595242 RBM42Q9BTD8 480 aaKnown RBP17.67■□□□□ 0.42
SCAF1-202ENST00000595242 NCAPD2Q15021 1401 aa17.66■□□□□ 0.42
SCAF1-202ENST00000595242 IFNL2Q8IZJ0 200 aa17.66■□□□□ 0.42
SCAF1-202ENST00000595242 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.66■□□□□ 0.42
SCAF1-202ENST00000595242 CNTNAP4Q9C0A0 1308 aa17.66■□□□□ 0.42
SCAF1-202ENST00000595242 AFDNP55196 1824 aaKnown RBP17.65■□□□□ 0.42
SCAF1-202ENST00000595242 KDM6AO15550 1401 aaPredicted RBP17.65■□□□□ 0.42
SCAF1-202ENST00000595242 DICER1Q9UPY3 1922 aaKnown RBP17.65■□□□□ 0.42
SCAF1-202ENST00000595242 PHKG2P15735 406 aa17.65■□□□□ 0.42
SCAF1-202ENST00000595242 RASSF7Q02833 373 aa17.65■□□□□ 0.42
SCAF1-202ENST00000595242 DLEC1Q9Y238 1755 aa17.64■□□□□ 0.41
SCAF1-202ENST00000595242 DDR1Q08345 913 aa17.64■□□□□ 0.41
SCAF1-202ENST00000595242 TESK2Q96S53 571 aa17.64■□□□□ 0.41
SCAF1-202ENST00000595242 LMNB1P20700 586 aa17.63■□□□□ 0.41
SCAF1-202ENST00000595242 FKBP8Q14318 412 aa17.63■□□□□ 0.41
SCAF1-202ENST00000595242 MKRN1Q9UHC7 482 aaKnown RBP17.63■□□□□ 0.41
SCAF1-202ENST00000595242 ANKRD26Q9UPS8 1709 aa17.63■□□□□ 0.41
SCAF1-202ENST00000595242 FOXN1O15353 648 aa17.62■□□□□ 0.41
SCAF1-202ENST00000595242 SRP68Q9UHB9 627 aaKnown RBP17.62■□□□□ 0.41
SCAF1-202ENST00000595242 EMILIN1Q9Y6C2 1016 aa17.62■□□□□ 0.41
SCAF1-202ENST00000595242 PRDM10Q9NQV6 1147 aa17.61■□□□□ 0.41
SCAF1-202ENST00000595242 CREBZFQ9NS37 354 aa17.61■□□□□ 0.41
SCAF1-202ENST00000595242 POTECB2RU33 542 aa17.6■□□□□ 0.41
SCAF1-202ENST00000595242 PPM1GO15355 546 aaPredicted RBP17.6■□□□□ 0.41
SCAF1-202ENST00000595242 USP42Q9H9J4 1324 aaKnown RBP17.6■□□□□ 0.41
SCAF1-202ENST00000595242 VIRMAQ69YN4 1812 aaKnown RBP17.59■□□□□ 0.41
SCAF1-202ENST00000595242 ST20-MTHFSA0A0A6YYL1 179 aa17.59■□□□□ 0.41
SCAF1-202ENST00000595242 ERVV-2B6SEH9 535 aa17.59■□□□□ 0.41
SCAF1-202ENST00000595242 EYA1Q99502 592 aa17.59■□□□□ 0.41
SCAF1-202ENST00000595242 POLRMTO00411 1230 aaKnown RBP17.58■□□□□ 0.4
SCAF1-202ENST00000595242 ADAMTS7Q9UKP4 1686 aa17.58■□□□□ 0.4
SCAF1-202ENST00000595242 SLC24A1O60721 1099 aa17.57■□□□□ 0.4
SCAF1-202ENST00000595242 MIER1Q8N108 512 aa17.57■□□□□ 0.4
SCAF1-202ENST00000595242 PCDH10Q9P2E7 1040 aa17.57■□□□□ 0.4
SCAF1-202ENST00000595242 TJP1Q07157 1748 aa17.56■□□□□ 0.4
SCAF1-202ENST00000595242 TM4SF1P30408 202 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms