RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ATG3Q9NT62 314 aa23.8■■□□□ 1.4
SHKBP1-204ENST00000594862 ASAP1Q9ULH1 1129 aa23.8■■□□□ 1.4
SHKBP1-204ENST00000594862 AK7Q96M32 723 aa23.79■■□□□ 1.4
SHKBP1-204ENST00000594862 ZEB1P37275 1124 aaPredicted RBP23.78■■□□□ 1.4
SHKBP1-204ENST00000594862 MRC1P22897 1456 aa23.78■■□□□ 1.4
SHKBP1-204ENST00000594862 ADAMTS7Q9UKP4 1686 aa23.77■■□□□ 1.4
SHKBP1-204ENST00000594862 POLD1P28340 1107 aa23.77■■□□□ 1.4
SHKBP1-204ENST00000594862 SGIP1Q9BQI5 828 aa23.77■■□□□ 1.4
SHKBP1-204ENST00000594862 ATP6V1AP38606 617 aa23.76■■□□□ 1.39
SHKBP1-204ENST00000594862 GAS2L2Q8NHY3 880 aa23.76■■□□□ 1.39
SHKBP1-204ENST00000594862 CICQ96RK0 1608 aaPredicted RBP23.75■■□□□ 1.39
SHKBP1-204ENST00000594862 MTHFSDQ2M296 383 aaKnown RBP23.75■■□□□ 1.39
SHKBP1-204ENST00000594862 VIRMAQ69YN4 1812 aaKnown RBP23.75■■□□□ 1.39
SHKBP1-204ENST00000594862 UBR3Q6ZT12 1888 aa23.75■■□□□ 1.39
SHKBP1-204ENST00000594862 DCAF8L1A6NGE4 600 aa23.74■■□□□ 1.39
SHKBP1-204ENST00000594862 MSH5O43196 834 aa23.74■■□□□ 1.39
SHKBP1-204ENST00000594862 ARXQ96QS3 562 aa23.74■■□□□ 1.39
SHKBP1-204ENST00000594862 MAP3K5Q99683 1374 aa23.74■■□□□ 1.39
SHKBP1-204ENST00000594862 SSFA2P28290 1259 aa23.73■■□□□ 1.39
SHKBP1-204ENST00000594862 NFATC2IPQ8NCF5 419 aa23.73■■□□□ 1.39
SHKBP1-204ENST00000594862 SLC52A2Q9HAB3 445 aa23.73■■□□□ 1.39
SHKBP1-204ENST00000594862 COL5A3P25940 1745 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-204ENST00000594862 COL23A1Q86Y22 540 aaPredicted RBP23.72■■□□□ 1.39
SHKBP1-204ENST00000594862 LINC00116Q8NCU8 138 aa23.72■■□□□ 1.39
SHKBP1-204ENST00000594862 RNMTO43148 476 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-204ENST00000594862 ITPK1Q13572 414 aa23.71■■□□□ 1.39
SHKBP1-204ENST00000594862 RBM42Q9BTD8 480 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-204ENST00000594862 U2AF1L5P0DN76 240 aaPredicted RBP23.7■■□□□ 1.38
SHKBP1-204ENST00000594862 U2AF1Q01081 240 aaKnown RBP eCLIP23.7■■□□□ 1.38
SHKBP1-204ENST00000594862 RALBP1Q15311 655 aa23.7■■□□□ 1.38
SHKBP1-204ENST00000594862 RSPH6AQ9H0K4 717 aa23.7■■□□□ 1.38
SHKBP1-204ENST00000594862 FCHSD2O94868 740 aa23.69■■□□□ 1.38
SHKBP1-204ENST00000594862 PRKAR2BP31323 418 aa23.69■■□□□ 1.38
SHKBP1-204ENST00000594862 CNTNAP4Q9C0A0 1308 aa23.68■■□□□ 1.38
SHKBP1-204ENST00000594862 GNAT3A8MTJ3 354 aa23.68■■□□□ 1.38
SHKBP1-204ENST00000594862 RC3H1Q5TC82 1133 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-204ENST00000594862 FHDC1Q9C0D6 1143 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-204ENST00000594862 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.67■■□□□ 1.38
SHKBP1-204ENST00000594862 GNPATO15228 680 aa23.67■■□□□ 1.38
SHKBP1-204ENST00000594862 ADRA2BP18089 450 aa23.66■■□□□ 1.38
SHKBP1-204ENST00000594862 LGR6Q9HBX8 967 aa23.66■■□□□ 1.38
SHKBP1-204ENST00000594862 TJP1Q07157 1748 aa23.65■■□□□ 1.38
SHKBP1-204ENST00000594862 PTCD1O75127 700 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-204ENST00000594862 NEFMP07197 916 aa23.65■■□□□ 1.38
SHKBP1-204ENST00000594862 SYT17Q9BSW7 474 aa23.65■■□□□ 1.38
SHKBP1-204ENST00000594862 RTCBQ9Y3I0 505 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-204ENST00000594862 PHF14O94880 888 aa23.64■■□□□ 1.37
SHKBP1-204ENST00000594862 TEFQ10587 303 aa23.64■■□□□ 1.37
SHKBP1-204ENST00000594862 DDX10Q13206 875 aaKnown RBP23.64■■□□□ 1.37
SHKBP1-204ENST00000594862 SLC4A9Q96Q91 983 aa23.64■■□□□ 1.37
SHKBP1-204ENST00000594862 UBR2Q8IWV8 1755 aa23.63■■□□□ 1.37
SHKBP1-204ENST00000594862 PNNQ9H307 717 aaKnown RBP23.62■■□□□ 1.37
SHKBP1-204ENST00000594862 SIPA1L3O60292 1781 aaPredicted RBP23.61■■□□□ 1.37
SHKBP1-204ENST00000594862 KCPQ6ZWJ8 1503 aa23.61■■□□□ 1.37
SHKBP1-204ENST00000594862 TTC5Q8N0Z6 440 aa23.61■■□□□ 1.37
SHKBP1-204ENST00000594862 CEMIPQ8WUJ3 1361 aa23.61■■□□□ 1.37
SHKBP1-204ENST00000594862 CHD4Q14839 1912 aa23.61■■□□□ 1.37
SHKBP1-204ENST00000594862 TRAPPC3LQ5T215 181 aa23.6■■□□□ 1.37
SHKBP1-204ENST00000594862 VSIG10Q8N0Z9 540 aa23.6■■□□□ 1.37
SHKBP1-204ENST00000594862 PHACTR3Q96KR7 559 aa23.6■■□□□ 1.37
SHKBP1-204ENST00000594862 RPS6KA4O75676 772 aa23.59■■□□□ 1.37
SHKBP1-204ENST00000594862 MSL1Q68DK7 614 aa23.59■■□□□ 1.37
SHKBP1-204ENST00000594862 AMIGO3Q86WK7 504 aa23.59■■□□□ 1.37
SHKBP1-204ENST00000594862 RTF1Q92541 710 aaKnown RBP23.59■■□□□ 1.37
SHKBP1-204ENST00000594862 MYBBP1AQ9BQG0 1328 aaKnown RBP23.59■■□□□ 1.37
SHKBP1-204ENST00000594862 HTATSF1O43719 755 aaKnown RBP23.58■■□□□ 1.37
SHKBP1-204ENST00000594862 CRKLP46109 303 aaKnown RBP23.57■■□□□ 1.36
SHKBP1-204ENST00000594862 KLHL34Q8N239 644 aa23.57■■□□□ 1.36
SHKBP1-204ENST00000594862 IL17REQ8NFR9 667 aa23.57■■□□□ 1.36
SHKBP1-204ENST00000594862 GOLGB1Q14789 3259 aaKnown RBP23.57■■□□□ 1.36
SHKBP1-204ENST00000594862 MYH14Q7Z406 1995 aaKnown RBP23.56■■□□□ 1.36
SHKBP1-204ENST00000594862 C4AP0C0L4 1744 aa23.56■■□□□ 1.36
SHKBP1-204ENST00000594862 RFC4P35249 363 aa23.55■■□□□ 1.36
SHKBP1-204ENST00000594862 SLC39A6Q13433 755 aa23.55■■□□□ 1.36
SHKBP1-204ENST00000594862 NLGN1Q8N2Q7 840 aa23.54■■□□□ 1.36
SHKBP1-204ENST00000594862 ZNF784Q8NCA9 323 aaPredicted RBP23.54■■□□□ 1.36
SHKBP1-204ENST00000594862 CCDC87Q9NVE4 849 aa23.54■■□□□ 1.36
SHKBP1-204ENST00000594862 CD2APQ9Y5K6 639 aa23.54■■□□□ 1.36
SHKBP1-204ENST00000594862 ZNF790Q6PG37 636 aa23.53■■□□□ 1.36
SHKBP1-204ENST00000594862 DNAJC10Q8IXB1 793 aa23.53■■□□□ 1.36
SHKBP1-204ENST00000594862 TEX13AQ9BXU3 409 aaPredicted RBP23.53■■□□□ 1.36
SHKBP1-204ENST00000594862 MAPK8IP3Q9UPT6 1336 aa23.53■■□□□ 1.36
SHKBP1-204ENST00000594862 ARHGEF1Q92888 912 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-204ENST00000594862 HEG1Q9ULI3 1381 aa23.51■■□□□ 1.35
SHKBP1-204ENST00000594862 BTBD11A6QL63 1104 aa23.5■■□□□ 1.35
SHKBP1-204ENST00000594862 STARD3NLO95772 234 aa23.5■■□□□ 1.35
SHKBP1-204ENST00000594862 CYP19A1P11511 503 aaPredicted RBP23.5■■□□□ 1.35
SHKBP1-204ENST00000594862 SMIM5Q71RC9 77 aa23.5■■□□□ 1.35
SHKBP1-204ENST00000594862 FMNL2Q96PY5 1086 aa23.5■■□□□ 1.35
SHKBP1-204ENST00000594862 INTS5Q6P9B9 1019 aaKnown RBP23.49■■□□□ 1.35
SHKBP1-204ENST00000594862 PLEKHF1Q96S99 279 aa23.48■■□□□ 1.35
SHKBP1-204ENST00000594862 SOS1Q07889 1333 aaPredicted RBP23.48■■□□□ 1.35
SHKBP1-204ENST00000594862 USP42Q9H9J4 1324 aaKnown RBP23.48■■□□□ 1.35
SHKBP1-204ENST00000594862 DLG5Q8TDM6 1919 aa23.47■■□□□ 1.35
SHKBP1-204ENST00000594862 MMP10P09238 476 aa23.47■■□□□ 1.35
SHKBP1-204ENST00000594862 ZNF496Q96IT1 587 aaPredicted RBP23.47■■□□□ 1.35
SHKBP1-204ENST00000594862 GYS1P13807 737 aa23.46■■□□□ 1.35
SHKBP1-204ENST00000594862 NFE2L2Q16236 605 aa23.46■■□□□ 1.35
SHKBP1-204ENST00000594862 MCM10Q7L590 875 aa23.46■■□□□ 1.35
SHKBP1-204ENST00000594862 COL15A1P39059 1388 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms