RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-204	ENST00000594828	DIAPH1	O60610	1272 aa	Known RBP	31.77	■■■□□ 2.68
LSM4-204	ENST00000594828	KLHL34	Q8N239	644 aa		31.77	■■■□□ 2.68
LSM4-204	ENST00000594828	LINC00116	Q8NCU8	138 aa		31.77	■■■□□ 2.68
LSM4-204	ENST00000594828	KDM6A	O15550	1401 aa	Predicted RBP	31.76	■■■□□ 2.68
LSM4-204	ENST00000594828	ITPK1	Q13572	414 aa		31.75	■■■□□ 2.67
LSM4-204	ENST00000594828	HMOX1	P09601	288 aa		31.74	■■■□□ 2.67
LSM4-204	ENST00000594828	YY1	P25490	414 aa		31.74	■■■□□ 2.67
LSM4-204	ENST00000594828	MSL1	Q68DK7	614 aa		31.74	■■■□□ 2.67
LSM4-204	ENST00000594828	PHF14	O94880	888 aa		31.72	■■■□□ 2.67
LSM4-204	ENST00000594828	AMIGO3	Q86WK7	504 aa		31.72	■■■□□ 2.67
LSM4-204	ENST00000594828	RBM42	Q9BTD8	480 aa	Known RBP	31.72	■■■□□ 2.67
LSM4-204	ENST00000594828	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	31.71	■■■□□ 2.67
LSM4-204	ENST00000594828	SSFA2	P28290	1259 aa		31.7	■■■□□ 2.67
LSM4-204	ENST00000594828	AKAP4	Q5JQC9	854 aa		31.7	■■■□□ 2.67
LSM4-204	ENST00000594828	SMIM5	Q71RC9	77 aa		31.7	■■■□□ 2.67
LSM4-204	ENST00000594828	NFATC2IP	Q8NCF5	419 aa		31.7	■■■□□ 2.67
LSM4-204	ENST00000594828	GNPAT	O15228	680 aa		31.68	■■■□□ 2.66
LSM4-204	ENST00000594828	SLC4A9	Q96Q91	983 aa		31.68	■■■□□ 2.66
LSM4-204	ENST00000594828	UBR3	Q6ZT12	1888 aa		31.67	■■■□□ 2.66
LSM4-204	ENST00000594828	U2SURP	O15042	1029 aa	Known RBP	31.63	■■■□□ 2.65
LSM4-204	ENST00000594828	GPR162	Q16538	588 aa		31.63	■■■□□ 2.65
LSM4-204	ENST00000594828	MTHFSD	Q2M296	383 aa	Known RBP	31.63	■■■□□ 2.65
LSM4-204	ENST00000594828	PTCD1	O75127	700 aa	Known RBP	31.62	■■■□□ 2.65
LSM4-204	ENST00000594828	NLGN2	Q8NFZ4	835 aa		31.62	■■■□□ 2.65
LSM4-204	ENST00000594828	LGR6	Q9HBX8	967 aa		31.62	■■■□□ 2.65
LSM4-204	ENST00000594828	COL3A1	P02461	1466 aa	Predicted RBP	31.61	■■■□□ 2.65
LSM4-204	ENST00000594828	RC3H1	Q5TC82	1133 aa	Known RBP	31.61	■■■□□ 2.65
LSM4-204	ENST00000594828	RTCB	Q9Y3I0	505 aa	Known RBP	31.61	■■■□□ 2.65
LSM4-204	ENST00000594828	ZNF831	Q5JPB2	1677 aa		31.6	■■■□□ 2.65
LSM4-204	ENST00000594828	SCN11A	Q9UI33	1791 aa		31.59	■■■□□ 2.65
LSM4-204	ENST00000594828	RNMT	O43148	476 aa	Known RBP	31.59	■■■□□ 2.65
LSM4-204	ENST00000594828	TRAPPC3L	Q5T215	181 aa		31.59	■■■□□ 2.65
LSM4-204	ENST00000594828	CFAP53	Q96M91	514 aa		31.59	■■■□□ 2.65
LSM4-204	ENST00000594828	SLC52A2	Q9HAB3	445 aa		31.59	■■■□□ 2.65
LSM4-204	ENST00000594828	CNTNAP4	Q9C0A0	1308 aa		31.57	■■■□□ 2.64
LSM4-204	ENST00000594828	PELP1	Q8IZL8	1130 aa	Known RBP	31.57	■■■□□ 2.64
LSM4-204	ENST00000594828	CD2AP	Q9Y5K6	639 aa		31.56	■■■□□ 2.64
LSM4-204	ENST00000594828	RPS6KA4	O75676	772 aa		31.54	■■■□□ 2.64
LSM4-204	ENST00000594828	PPP2R1A	P30153	589 aa		31.53	■■■□□ 2.64
LSM4-204	ENST00000594828	ADRA2B	P18089	450 aa		31.52	■■■□□ 2.64
LSM4-204	ENST00000594828	ARHGEF1	Q92888	912 aa	Known RBP	31.52	■■■□□ 2.64
LSM4-204	ENST00000594828	COL5A3	P25940	1745 aa	Predicted RBP	31.52	■■■□□ 2.64
LSM4-204	ENST00000594828	GAS2L2	Q8NHY3	880 aa		31.5	■■■□□ 2.63
LSM4-204	ENST00000594828	NUDC	Q9Y266	331 aa		31.5	■■■□□ 2.63
LSM4-204	ENST00000594828	RFC4	P35249	363 aa		31.49	■■■□□ 2.63
LSM4-204	ENST00000594828	CRKL	P46109	303 aa	Known RBP	31.49	■■■□□ 2.63
LSM4-204	ENST00000594828	SLC39A6	Q13433	755 aa		31.49	■■■□□ 2.63
LSM4-204	ENST00000594828	MRC1	P22897	1456 aa		31.48	■■■□□ 2.63
LSM4-204	ENST00000594828	NLGN1	Q8N2Q7	840 aa		31.48	■■■□□ 2.63
LSM4-204	ENST00000594828	GNAT3	A8MTJ3	354 aa		31.46	■■■□□ 2.63
LSM4-204	ENST00000594828	MMP10	P09238	476 aa		31.46	■■■□□ 2.63
LSM4-204	ENST00000594828	DNAJC10	Q8IXB1	793 aa		31.45	■■■□□ 2.63
LSM4-204	ENST00000594828	MYH14	Q7Z406	1995 aa	Known RBP	31.45	■■■□□ 2.62
LSM4-204	ENST00000594828	ADAMTS7	Q9UKP4	1686 aa		31.44	■■■□□ 2.62
LSM4-204	ENST00000594828	GRIN3B	O60391	1043 aa		31.44	■■■□□ 2.62
LSM4-204	ENST00000594828	YBX3	P16989	372 aa	Known RBP eCLIP	31.44	■■■□□ 2.62	1e-10	■■■□□ 17.4
LSM4-204	ENST00000594828	PRKAR2B	P31323	418 aa		31.44	■■■□□ 2.62
LSM4-204	ENST00000594828	RSPH6A	Q9H0K4	717 aa		31.44	■■■□□ 2.62
LSM4-204	ENST00000594828	VIRMA	Q69YN4	1812 aa	Known RBP	31.44	■■■□□ 2.62
LSM4-204	ENST00000594828	CHD4	Q14839	1912 aa		31.43	■■■□□ 2.62
LSM4-204	ENST00000594828	IL17RE	Q8NFR9	667 aa		31.43	■■■□□ 2.62
LSM4-204	ENST00000594828	PHACTR3	Q96KR7	559 aa		31.43	■■■□□ 2.62
LSM4-204	ENST00000594828	TJP1	Q07157	1748 aa		31.42	■■■□□ 2.62
LSM4-204	ENST00000594828	U2AF1L5	P0DN76	240 aa	Predicted RBP	31.42	■■■□□ 2.62
LSM4-204	ENST00000594828	GYS1	P13807	737 aa		31.42	■■■□□ 2.62
LSM4-204	ENST00000594828	U2AF1	Q01081	240 aa	Known RBP eCLIP	31.42	■■■□□ 2.62
LSM4-204	ENST00000594828	INTS5	Q6P9B9	1019 aa	Known RBP	31.42	■■■□□ 2.62
LSM4-204	ENST00000594828	UTRN	P46939	3433 aa		31.41	■■■□□ 2.62
LSM4-204	ENST00000594828	TEF	Q10587	303 aa		31.41	■■■□□ 2.62
LSM4-204	ENST00000594828	CIC	Q96RK0	1608 aa	Predicted RBP	31.41	■■■□□ 2.62
LSM4-204	ENST00000594828	CCDC87	Q9NVE4	849 aa		31.4	■■■□□ 2.62
LSM4-204	ENST00000594828	VSIG10	Q8N0Z9	540 aa		31.39	■■■□□ 2.62
LSM4-204	ENST00000594828	ZNF784	Q8NCA9	323 aa	Predicted RBP	31.39	■■■□□ 2.62
LSM4-204	ENST00000594828	CYP19A1	P11511	503 aa	Predicted RBP	31.38	■■■□□ 2.61
LSM4-204	ENST00000594828	TTC5	Q8N0Z6	440 aa		31.38	■■■□□ 2.61
LSM4-204	ENST00000594828	FCHSD2	O94868	740 aa		31.37	■■■□□ 2.61
LSM4-204	ENST00000594828	KCP	Q6ZWJ8	1503 aa		31.37	■■■□□ 2.61
LSM4-204	ENST00000594828	SRP68	Q9UHB9	627 aa	Known RBP	31.36	■■■□□ 2.61
LSM4-204	ENST00000594828	PARP3	Q9Y6F1	533 aa		31.35	■■■□□ 2.61
LSM4-204	ENST00000594828	USP42	Q9H9J4	1324 aa	Known RBP	31.34	■■■□□ 2.61
LSM4-204	ENST00000594828	C4A	P0C0L4	1744 aa		31.34	■■■□□ 2.61
LSM4-204	ENST00000594828	ZNF790	Q6PG37	636 aa		31.33	■■■□□ 2.61
LSM4-204	ENST00000594828	SOS1	Q07889	1333 aa	Predicted RBP	31.32	■■■□□ 2.6
LSM4-204	ENST00000594828	CEMIP	Q8WUJ3	1361 aa		31.31	■■■□□ 2.6
LSM4-204	ENST00000594828	ZPR1	O75312	459 aa		31.31	■■■□□ 2.6
LSM4-204	ENST00000594828	FKBP8	Q14318	412 aa		31.31	■■■□□ 2.6
LSM4-204	ENST00000594828	WWC3	Q9ULE0	1092 aa		31.31	■■■□□ 2.6
LSM4-204	ENST00000594828	ZNF496	Q96IT1	587 aa	Predicted RBP	31.3	■■■□□ 2.6
LSM4-204	ENST00000594828	ZBTB1	Q9Y2K1	713 aa		31.3	■■■□□ 2.6
LSM4-204	ENST00000594828	STARD3NL	O95772	234 aa		31.29	■■■□□ 2.6
LSM4-204	ENST00000594828	TGFB2	P61812	414 aa		31.29	■■■□□ 2.6
LSM4-204	ENST00000594828	RTF1	Q92541	710 aa	Known RBP	31.29	■■■□□ 2.6
LSM4-204	ENST00000594828	UBR2	Q8IWV8	1755 aa		31.29	■■■□□ 2.6
LSM4-204	ENST00000594828	BTBD11	A6QL63	1104 aa		31.27	■■■□□ 2.6
LSM4-204	ENST00000594828	USPL1	Q5W0Q7	1092 aa		31.27	■■■□□ 2.6
LSM4-204	ENST00000594828	TEX13A	Q9BXU3	409 aa	Predicted RBP	31.27	■■■□□ 2.6
LSM4-204	ENST00000594828	GOLGB1	Q14789	3259 aa	Known RBP	31.27	■■■□□ 2.6
LSM4-204	ENST00000594828	CANX	P27824	592 aa	Known RBP	31.26	■■■□□ 2.59
LSM4-204	ENST00000594828	HEG1	Q9ULI3	1381 aa		31.26	■■■□□ 2.59
LSM4-204	ENST00000594828	SIPA1L3	O60292	1781 aa	Predicted RBP	31.25	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms