RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 SMIM5Q71RC9 77 aa24.06■■□□□ 1.44
SHKBP1-203ENST00000594298 PANK3Q9H999 370 aa24.06■■□□□ 1.44
SHKBP1-203ENST00000594298 ERVV-2B6SEH9 535 aa24.04■■□□□ 1.44
SHKBP1-203ENST00000594298 KDRP35968 1356 aa24.03■■□□□ 1.44
SHKBP1-203ENST00000594298 SENP3-EIF4A1A0A087X0R7 540 aa24.03■■□□□ 1.44
SHKBP1-203ENST00000594298 GNPATO15228 680 aa24.03■■□□□ 1.44
SHKBP1-203ENST00000594298 HSP90AB1P08238 724 aaKnown RBP24.03■■□□□ 1.44
SHKBP1-203ENST00000594298 DCAF5Q96JK2 942 aa24.02■■□□□ 1.44
SHKBP1-203ENST00000594298 PLEKHO1Q53GL0 409 aaPredicted RBP24.01■■□□□ 1.43
SHKBP1-203ENST00000594298 AMOTQ4VCS5 1084 aa24■■□□□ 1.43
SHKBP1-203ENST00000594298 ZNF831Q5JPB2 1677 aa23.99■■□□□ 1.43
SHKBP1-203ENST00000594298 SLC4A9Q96Q91 983 aa23.98■■□□□ 1.43
SHKBP1-203ENST00000594298 KDM6AO15550 1401 aaPredicted RBP23.97■■□□□ 1.43
SHKBP1-203ENST00000594298 ATP10DQ9P241 1426 aa23.97■■□□□ 1.43
SHKBP1-203ENST00000594298 ADCY9O60503 1353 aa23.96■■□□□ 1.43
SHKBP1-203ENST00000594298 RC3H1Q5TC82 1133 aaKnown RBP23.96■■□□□ 1.43
SHKBP1-203ENST00000594298 ZNF530Q6P9A1 599 aaPredicted RBP23.96■■□□□ 1.43
SHKBP1-203ENST00000594298 MORC1Q86VD1 984 aa23.96■■□□□ 1.43
SHKBP1-203ENST00000594298 RTCBQ9Y3I0 505 aaKnown RBP23.96■■□□□ 1.43
SHKBP1-203ENST00000594298 CNTNAP4Q9C0A0 1308 aa23.95■■□□□ 1.42
SHKBP1-203ENST00000594298 ADRA2BP18089 450 aa23.95■■□□□ 1.42
SHKBP1-203ENST00000594298 TRAPPC3LQ5T215 181 aa23.95■■□□□ 1.42
SHKBP1-203ENST00000594298 MMP10P09238 476 aa23.94■■□□□ 1.42
SHKBP1-203ENST00000594298 RBM42Q9BTD8 480 aaKnown RBP23.94■■□□□ 1.42
SHKBP1-203ENST00000594298 CABP4P57796 275 aa23.93■■□□□ 1.42
SHKBP1-203ENST00000594298 AEBP1Q8IUX7 1158 aa23.93■■□□□ 1.42
SHKBP1-203ENST00000594298 NLGN1Q8N2Q7 840 aa23.93■■□□□ 1.42
SHKBP1-203ENST00000594298 MTHFSP49914 203 aa23.92■■□□□ 1.42
SHKBP1-203ENST00000594298 RPS6KA4O75676 772 aa23.91■■□□□ 1.42
SHKBP1-203ENST00000594298 C1orf141Q5JVX7 400 aa23.91■■□□□ 1.42
SHKBP1-203ENST00000594298 ARHGEF1Q92888 912 aaKnown RBP23.91■■□□□ 1.42
SHKBP1-203ENST00000594298 KNSTRNQ9Y448 316 aa23.91■■□□□ 1.42
SHKBP1-203ENST00000594298 IL13P35225 146 aa23.9■■□□□ 1.42
SHKBP1-203ENST00000594298 SULT6B1Q6IMI4 303 aa23.9■■□□□ 1.42
SHKBP1-203ENST00000594298 GPBP1L1Q9HC44 474 aaPredicted RBP23.9■■□□□ 1.42
SHKBP1-203ENST00000594298 TGFB2P61812 414 aa23.89■■□□□ 1.41
SHKBP1-203ENST00000594298 COL5A3P25940 1745 aaPredicted RBP23.89■■□□□ 1.41
SHKBP1-203ENST00000594298 PXDNLA1KZ92 1463 aa23.88■■□□□ 1.41
SHKBP1-203ENST00000594298 GYS1P13807 737 aa23.88■■□□□ 1.41
SHKBP1-203ENST00000594298 WWC3Q9ULE0 1092 aa23.88■■□□□ 1.41
SHKBP1-203ENST00000594298 C10orf71Q711Q0 1435 aa23.87■■□□□ 1.41
SHKBP1-203ENST00000594298 RFC4P35249 363 aa23.87■■□□□ 1.41
SHKBP1-203ENST00000594298 AMER1Q5JTC6 1135 aaPredicted RBP23.87■■□□□ 1.41
SHKBP1-203ENST00000594298 CICQ96RK0 1608 aaPredicted RBP23.87■■□□□ 1.41
SHKBP1-203ENST00000594298 NFATC2IPQ8NCF5 419 aa23.86■■□□□ 1.41
SHKBP1-203ENST00000594298 KIF13BQ9NQT8 1826 aa23.86■■□□□ 1.41
SHKBP1-203ENST00000594298 PTCD1O75127 700 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-203ENST00000594298 CCDC87Q9NVE4 849 aa23.84■■□□□ 1.41
SHKBP1-203ENST00000594298 AKAP4Q5JQC9 854 aa23.83■■□□□ 1.41
SHKBP1-203ENST00000594298 KIAA1551Q9HCM1 1747 aa23.82■■□□□ 1.4
SHKBP1-203ENST00000594298 CRKLP46109 303 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-203ENST00000594298 PARP3Q9Y6F1 533 aa23.82■■□□□ 1.4
SHKBP1-203ENST00000594298 C4AP0C0L4 1744 aa23.81■■□□□ 1.4
SHKBP1-203ENST00000594298 A0A0G2JLW4 131 aa23.81■■□□□ 1.4
SHKBP1-203ENST00000594298 ZNF526Q8TF50 670 aaPredicted RBP23.81■■□□□ 1.4
SHKBP1-203ENST00000594298 KIF7Q2M1P5 1343 aa23.81■■□□□ 1.4
SHKBP1-203ENST00000594298 BCS1LQ9Y276 419 aa23.79■■□□□ 1.4
SHKBP1-203ENST00000594298 USP42Q9H9J4 1324 aaKnown RBP23.79■■□□□ 1.4
SHKBP1-203ENST00000594298 DPEP1P16444 411 aa23.78■■□□□ 1.4
SHKBP1-203ENST00000594298 SLC52A2Q9HAB3 445 aa23.78■■□□□ 1.4
SHKBP1-203ENST00000594298 MYH14Q7Z406 1995 aaKnown RBP23.78■■□□□ 1.4
SHKBP1-203ENST00000594298 TJP1Q07157 1748 aa23.77■■□□□ 1.4
SHKBP1-203ENST00000594298 INTS5Q6P9B9 1019 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-203ENST00000594298 MRC1P22897 1456 aa23.76■■□□□ 1.39
SHKBP1-203ENST00000594298 PER1O15534 1290 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-203ENST00000594298 SRP68Q9UHB9 627 aaKnown RBP23.76■■□□□ 1.39
SHKBP1-203ENST00000594298 SCN11AQ9UI33 1791 aa23.75■■□□□ 1.39
SHKBP1-203ENST00000594298 KIF3CO14782 793 aa23.75■■□□□ 1.39
SHKBP1-203ENST00000594298 KCNA3P22001 575 aa23.75■■□□□ 1.39
SHKBP1-203ENST00000594298 FKBP8Q14318 412 aa23.75■■□□□ 1.39
SHKBP1-203ENST00000594298 LGR6Q9HBX8 967 aa23.75■■□□□ 1.39
SHKBP1-203ENST00000594298 N4BP2Q86UW6 1770 aaPredicted RBP23.75■■□□□ 1.39
SHKBP1-203ENST00000594298 HSPA6P17066 643 aa23.74■■□□□ 1.39
SHKBP1-203ENST00000594298 RNMTO43148 476 aaKnown RBP23.73■■□□□ 1.39
SHKBP1-203ENST00000594298 FCHSD2O94868 740 aa23.73■■□□□ 1.39
SHKBP1-203ENST00000594298 HMOX1P09601 288 aa23.73■■□□□ 1.39
SHKBP1-203ENST00000594298 ZEB1P37275 1124 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-203ENST00000594298 DDR1Q08345 913 aa23.73■■□□□ 1.39
SHKBP1-203ENST00000594298 ARHGAP27Q6ZUM4 889 aa23.72■■□□□ 1.39
SHKBP1-203ENST00000594298 DNAJC10Q8IXB1 793 aa23.72■■□□□ 1.39
SHKBP1-203ENST00000594298 SOS1Q07889 1333 aaPredicted RBP23.71■■□□□ 1.39
SHKBP1-203ENST00000594298 DIAPH1O60610 1272 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-203ENST00000594298 TM4SF1P30408 202 aa23.71■■□□□ 1.39
SHKBP1-203ENST00000594298 MTHFSDQ2M296 383 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-203ENST00000594298 PIM2Q9P1W9 311 aa23.71■■□□□ 1.39
SHKBP1-203ENST00000594298 ADAMTS7Q9UKP4 1686 aa23.7■■□□□ 1.39
SHKBP1-203ENST00000594298 CYP19A1P11511 503 aaPredicted RBP23.7■■□□□ 1.38
SHKBP1-203ENST00000594298 BRCA1P38398 1863 aaKnown RBP23.69■■□□□ 1.38
SHKBP1-203ENST00000594298 POLRMTO00411 1230 aaKnown RBP23.69■■□□□ 1.38
SHKBP1-203ENST00000594298 VSIG10Q8N0Z9 540 aa23.69■■□□□ 1.38
SHKBP1-203ENST00000594298 KCPQ6ZWJ8 1503 aa23.69■■□□□ 1.38
SHKBP1-203ENST00000594298 NPC1L1Q9UHC9 1359 aa23.68■■□□□ 1.38
SHKBP1-203ENST00000594298 ZPR1O75312 459 aa23.68■■□□□ 1.38
SHKBP1-203ENST00000594298 SLC39A6Q13433 755 aa23.68■■□□□ 1.38
SHKBP1-203ENST00000594298 CC2D1BQ5T0F9 858 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-203ENST00000594298 CEP350Q5VT06 3117 aa23.68■■□□□ 1.38
SHKBP1-203ENST00000594298 USPL1Q5W0Q7 1092 aa23.67■■□□□ 1.38
SHKBP1-203ENST00000594298 DALRD3Q5D0E6 543 aaKnown RBP23.66■■□□□ 1.38
SHKBP1-203ENST00000594298 NARFQ9UHQ1 456 aa23.66■■□□□ 1.38
SHKBP1-203ENST00000594298 COL15A1P39059 1388 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms