RNA–Protein interactions for RNA: ENST00000594081.1

SMG9-202, Transcript of SMG9, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG9, Length 563 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG9-202ENST00000594081 COL13A1Q5TAT6 717 aaPredicted RBP11.96□□□□□ -0.49
SMG9-202ENST00000594081 TESK2Q96S53 571 aa11.96□□□□□ -0.49
SMG9-202ENST00000594081 GGNBP2Q9H3C7 697 aa11.96□□□□□ -0.49
SMG9-202ENST00000594081 KDRP35968 1356 aa11.95□□□□□ -0.5
SMG9-202ENST00000594081 HTRA3P83110 453 aa11.95□□□□□ -0.5
SMG9-202ENST00000594081 ITPK1Q13572 414 aa11.95□□□□□ -0.5
SMG9-202ENST00000594081 RBM46Q8TBY0 533 aaKnown RBP11.95□□□□□ -0.5
SMG9-202ENST00000594081 KLRG1Q96E93 195 aa11.95□□□□□ -0.5
SMG9-202ENST00000594081 KCPQ6ZWJ8 1503 aa11.95□□□□□ -0.5
SMG9-202ENST00000594081 FYB1O15117 783 aa11.94□□□□□ -0.5
SMG9-202ENST00000594081 CAPN15O75808 1086 aa11.94□□□□□ -0.5
SMG9-202ENST00000594081 TGFB2P61812 414 aa11.94□□□□□ -0.5
SMG9-202ENST00000594081 JMYQ8N9B5 988 aa11.94□□□□□ -0.5
SMG9-202ENST00000594081 A0A0G2JLW4 131 aa11.93□□□□□ -0.5
SMG9-202ENST00000594081 ATP6V1AP38606 617 aa11.93□□□□□ -0.5
SMG9-202ENST00000594081 NKX1-1Q15270 411 aaPredicted RBP11.93□□□□□ -0.5
SMG9-202ENST00000594081 ARHGAP27Q6ZUM4 889 aa11.93□□□□□ -0.5
SMG9-202ENST00000594081 C16orf71Q8IYS4 520 aaPredicted RBP11.93□□□□□ -0.5
SMG9-202ENST00000594081 TMOD3Q9NYL9 352 aa11.93□□□□□ -0.5
SMG9-202ENST00000594081 FCHSD2O94868 740 aa11.92□□□□□ -0.5
SMG9-202ENST00000594081 ASAP1Q9ULH1 1129 aa11.92□□□□□ -0.5
SMG9-202ENST00000594081 ST20-MTHFSA0A0A6YYL1 179 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 DPEP1P16444 411 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 FSTL1Q12841 308 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 C9orf131Q5VYM1 1079 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 TNS4Q8IZW8 715 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 CCDC87Q9NVE4 849 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 SPG7Q9UQ90 795 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 TONSLQ96HA7 1378 aa11.91□□□□□ -0.5
SMG9-202ENST00000594081 SBF1O95248 1867 aa11.9□□□□□ -0.5
SMG9-202ENST00000594081 TMF1P82094 1093 aa11.9□□□□□ -0.5
SMG9-202ENST00000594081 TIAM2Q8IVF5 1701 aa11.9□□□□□ -0.5
SMG9-202ENST00000594081 NLGN1Q8N2Q7 840 aa11.9□□□□□ -0.5
SMG9-202ENST00000594081 RTCBQ9Y3I0 505 aaKnown RBP11.9□□□□□ -0.5
SMG9-202ENST00000594081 EMILIN1Q9Y6C2 1016 aa11.9□□□□□ -0.5
SMG9-202ENST00000594081 KDM2BQ8NHM5 1336 aa11.89□□□□□ -0.51
SMG9-202ENST00000594081 TRAPPC3LQ5T215 181 aa11.89□□□□□ -0.51
SMG9-202ENST00000594081 ATG3Q9NT62 314 aa11.89□□□□□ -0.51
SMG9-202ENST00000594081 MYH14Q7Z406 1995 aaKnown RBP11.88□□□□□ -0.51
SMG9-202ENST00000594081 CNTNAP4Q9C0A0 1308 aa11.88□□□□□ -0.51
SMG9-202ENST00000594081 GYS1P13807 737 aa11.88□□□□□ -0.51
SMG9-202ENST00000594081 PHKG2P15735 406 aa11.88□□□□□ -0.51
SMG9-202ENST00000594081 PRELPP51888 382 aa11.88□□□□□ -0.51
SMG9-202ENST00000594081 RNF181Q9P0P0 153 aa11.88□□□□□ -0.51
SMG9-202ENST00000594081 PARP3Q9Y6F1 533 aa11.88□□□□□ -0.51
SMG9-202ENST00000594081 TJP1Q07157 1748 aa11.88□□□□□ -0.51
SMG9-202ENST00000594081 SLC24A1O60721 1099 aa11.87□□□□□ -0.51
SMG9-202ENST00000594081 KCNA3P22001 575 aa11.87□□□□□ -0.51
SMG9-202ENST00000594081 IFNL2Q8IZJ0 200 aa11.87□□□□□ -0.51
SMG9-202ENST00000594081 ARHGEF1Q92888 912 aaKnown RBP11.87□□□□□ -0.51
SMG9-202ENST00000594081 DCAF5Q96JK2 942 aa11.87□□□□□ -0.51
SMG9-202ENST00000594081 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.87□□□□□ -0.51
SMG9-202ENST00000594081 DLEC1Q9Y238 1755 aa11.87□□□□□ -0.51
SMG9-202ENST00000594081 PPM1GO15355 546 aaPredicted RBP11.86□□□□□ -0.51
SMG9-202ENST00000594081 SMC1BQ8NDV3 1235 aa11.86□□□□□ -0.51
SMG9-202ENST00000594081 SLC4A9Q96Q91 983 aa11.86□□□□□ -0.51
SMG9-202ENST00000594081 PIM2Q9P1W9 311 aa11.86□□□□□ -0.51
SMG9-202ENST00000594081 ADAMTS7Q9UKP4 1686 aa11.86□□□□□ -0.51
SMG9-202ENST00000594081 PCNTO95613 3336 aa11.86□□□□□ -0.51
SMG9-202ENST00000594081 RFC4P35249 363 aa11.85□□□□□ -0.51
SMG9-202ENST00000594081 EYA1Q99502 592 aa11.85□□□□□ -0.51
SMG9-202ENST00000594081 RBM42Q9BTD8 480 aaKnown RBP11.85□□□□□ -0.51
SMG9-202ENST00000594081 RRAGCQ9HB90 399 aa11.85□□□□□ -0.51
SMG9-202ENST00000594081 RPS6KA4O75676 772 aa11.84□□□□□ -0.51
SMG9-202ENST00000594081 HSPA1AP0DMV8 641 aaKnown RBP11.84□□□□□ -0.51
SMG9-202ENST00000594081 HSPA1BP0DMV9 641 aaKnown RBP11.84□□□□□ -0.51
SMG9-202ENST00000594081 DALRD3Q5D0E6 543 aaKnown RBP11.84□□□□□ -0.51
SMG9-202ENST00000594081 RC3H1Q5TC82 1133 aaKnown RBP11.84□□□□□ -0.51
SMG9-202ENST00000594081 KDM6AO15550 1401 aaPredicted RBP11.84□□□□□ -0.51
SMG9-202ENST00000594081 WASHC2AQ641Q2 1341 aa11.84□□□□□ -0.51
SMG9-202ENST00000594081 DDR1Q08345 913 aa11.83□□□□□ -0.52
SMG9-202ENST00000594081 USP42Q9H9J4 1324 aaKnown RBP11.83□□□□□ -0.52
SMG9-202ENST00000594081 AFDNP55196 1824 aaKnown RBP11.82□□□□□ -0.52
SMG9-202ENST00000594081 CHRNA5P30532 468 aa11.82□□□□□ -0.52
SMG9-202ENST00000594081 RASSF7Q02833 373 aa11.82□□□□□ -0.52
SMG9-202ENST00000594081 CARD14Q9BXL6 1004 aa11.82□□□□□ -0.52
SMG9-202ENST00000594081 SRP68Q9UHB9 627 aaKnown RBP11.82□□□□□ -0.52
SMG9-202ENST00000594081 NRXN2Q9P2S2 1712 aa11.82□□□□□ -0.52
SMG9-202ENST00000594081 ZC3H4Q9UPT8 1303 aaKnown RBP11.82□□□□□ -0.52
SMG9-202ENST00000594081 FKBP8Q14318 412 aa11.81□□□□□ -0.52
SMG9-202ENST00000594081 CCDC88AQ3V6T2 1871 aa11.8□□□□□ -0.52
SMG9-202ENST00000594081 ERVV-2B6SEH9 535 aa11.8□□□□□ -0.52
SMG9-202ENST00000594081 CRKLP46109 303 aaKnown RBP11.8□□□□□ -0.52
SMG9-202ENST00000594081 POLRMTO00411 1230 aaKnown RBP11.79□□□□□ -0.52
SMG9-202ENST00000594081 HSP90AB1P08238 724 aaKnown RBP11.79□□□□□ -0.52
SMG9-202ENST00000594081 EIF4A2Q14240 407 aaKnown RBP11.79□□□□□ -0.52
SMG9-202ENST00000594081 CDCA8Q53HL2 280 aa11.79□□□□□ -0.52
SMG9-202ENST00000594081 SCN11AQ9UI33 1791 aa11.79□□□□□ -0.52
SMG9-202ENST00000594081 PTCD1O75127 700 aaKnown RBP11.78□□□□□ -0.52
SMG9-202ENST00000594081 POLKQ9UBT6 870 aa11.78□□□□□ -0.52
SMG9-202ENST00000594081 GLTPD2A6NH11 291 aa11.77□□□□□ -0.53
SMG9-202ENST00000594081 VEGFAP15692 232 aaPredicted RBP11.77□□□□□ -0.53
SMG9-202ENST00000594081 LMNB1P20700 586 aa11.77□□□□□ -0.53
SMG9-202ENST00000594081 CABP4P57796 275 aa11.77□□□□□ -0.53
SMG9-202ENST00000594081 ZNF530Q6P9A1 599 aaPredicted RBP11.77□□□□□ -0.53
SMG9-202ENST00000594081 COL11A2P13942 1736 aaPredicted RBP11.76□□□□□ -0.53
SMG9-202ENST00000594081 DICER1Q9UPY3 1922 aaKnown RBP11.76□□□□□ -0.53
SMG9-202ENST00000594081 VIRMAQ69YN4 1812 aaKnown RBP11.75□□□□□ -0.53
SMG9-202ENST00000594081 TM4SF1P30408 202 aa11.75□□□□□ -0.53
SMG9-202ENST00000594081 USPL1Q5W0Q7 1092 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms