RNA–Protein interactions for RNA: ENST00000593827.1

COPE-204, Transcript of coatomer protein complex subunit epsilon, humanhuman

TSL 3

Gene COPE, Length 601 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPE-204ENST00000593827 U2AF1Q01081 240 aaKnown RBP eCLIP26.81■■□□□ 1.88
COPE-204ENST00000593827 NFATC2IPQ8NCF5 419 aa26.81■■□□□ 1.88
COPE-204ENST00000593827 PTGER2P43116 358 aa26.8■■□□□ 1.88
COPE-204ENST00000593827 DDX10Q13206 875 aaKnown RBP26.8■■□□□ 1.88
COPE-204ENST00000593827 RBM42Q9BTD8 480 aaKnown RBP26.8■■□□□ 1.88
COPE-204ENST00000593827 DCAF8L1A6NGE4 600 aa26.79■■□□□ 1.88
COPE-204ENST00000593827 SLC52A2Q9HAB3 445 aa26.79■■□□□ 1.88
COPE-204ENST00000593827 RNMTO43148 476 aaKnown RBP26.78■■□□□ 1.88
COPE-204ENST00000593827 FCHSD2O94868 740 aa26.78■■□□□ 1.88
COPE-204ENST00000593827 NEFMP07197 916 aa26.77■■□□□ 1.88
COPE-204ENST00000593827 QSER1Q2KHR3 1735 aa26.76■■□□□ 1.88
COPE-204ENST00000593827 GNAT3A8MTJ3 354 aa26.76■■□□□ 1.87
COPE-204ENST00000593827 SSFA2P28290 1259 aa26.76■■□□□ 1.87
COPE-204ENST00000593827 PRKAR2BP31323 418 aa26.76■■□□□ 1.87
COPE-204ENST00000593827 ARXQ96QS3 562 aa26.76■■□□□ 1.87
COPE-204ENST00000593827 RSPH6AQ9H0K4 717 aa26.76■■□□□ 1.87
COPE-204ENST00000593827 C5P01031 1676 aa26.76■■□□□ 1.87
COPE-204ENST00000593827 COL23A1Q86Y22 540 aaPredicted RBP26.75■■□□□ 1.87
COPE-204ENST00000593827 LINC00116Q8NCU8 138 aa26.75■■□□□ 1.87
COPE-204ENST00000593827 SGIP1Q9BQI5 828 aa26.75■■□□□ 1.87
COPE-204ENST00000593827 MAP3K5Q99683 1374 aa26.74■■□□□ 1.87
COPE-204ENST00000593827 LGR6Q9HBX8 967 aa26.74■■□□□ 1.87
COPE-204ENST00000593827 ITPK1Q13572 414 aa26.73■■□□□ 1.87
COPE-204ENST00000593827 PNNQ9H307 717 aaKnown RBP26.73■■□□□ 1.87
COPE-204ENST00000593827 PTCD1O75127 700 aaKnown RBP26.72■■□□□ 1.87
COPE-204ENST00000593827 TEFQ10587 303 aa26.72■■□□□ 1.87
COPE-204ENST00000593827 RC3H1Q5TC82 1133 aaKnown RBP26.72■■□□□ 1.87
COPE-204ENST00000593827 C4BP0C0L5 1744 aa26.72■■□□□ 1.87
COPE-204ENST00000593827 GNPATO15228 680 aa26.71■■□□□ 1.87
COPE-204ENST00000593827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.7■■□□□ 1.86
COPE-204ENST00000593827 RTCBQ9Y3I0 505 aaKnown RBP26.7■■□□□ 1.86
COPE-204ENST00000593827 MRC1P22897 1456 aa26.69■■□□□ 1.86
COPE-204ENST00000593827 PHF14O94880 888 aa26.69■■□□□ 1.86
COPE-204ENST00000593827 RTF1Q92541 710 aaKnown RBP26.69■■□□□ 1.86
COPE-204ENST00000593827 CNTNAP4Q9C0A0 1308 aa26.68■■□□□ 1.86
COPE-204ENST00000593827 ADRA2BP18089 450 aa26.68■■□□□ 1.86
COPE-204ENST00000593827 TTC5Q8N0Z6 440 aa26.68■■□□□ 1.86
COPE-204ENST00000593827 PHACTR3Q96KR7 559 aa26.67■■□□□ 1.86
COPE-204ENST00000593827 FHDC1Q9C0D6 1143 aaPredicted RBP26.67■■□□□ 1.86
COPE-204ENST00000593827 TAF1LQ8IZX4 1826 aa26.67■■□□□ 1.86
COPE-204ENST00000593827 ZNF831Q5JPB2 1677 aa26.66■■□□□ 1.86
COPE-204ENST00000593827 SCN11AQ9UI33 1791 aa26.66■■□□□ 1.86
COPE-204ENST00000593827 SLC4A9Q96Q91 983 aa26.66■■□□□ 1.86
COPE-204ENST00000593827 MYBBP1AQ9BQG0 1328 aaKnown RBP26.65■■□□□ 1.86
COPE-204ENST00000593827 TRAPPC3LQ5T215 181 aa26.65■■□□□ 1.86
COPE-204ENST00000593827 SYT17Q9BSW7 474 aa26.65■■□□□ 1.86
COPE-204ENST00000593827 HTATSF1O43719 755 aaKnown RBP26.64■■□□□ 1.86
COPE-204ENST00000593827 VSIG10Q8N0Z9 540 aa26.64■■□□□ 1.86
COPE-204ENST00000593827 RPS6KA4O75676 772 aa26.63■■□□□ 1.85
COPE-204ENST00000593827 IL17REQ8NFR9 667 aa26.63■■□□□ 1.85
COPE-204ENST00000593827 TUBGCP6Q96RT7 1819 aa26.62■■□□□ 1.85
COPE-204ENST00000593827 SLC39A6Q13433 755 aa26.61■■□□□ 1.85
COPE-204ENST00000593827 MSL1Q68DK7 614 aa26.61■■□□□ 1.85
COPE-204ENST00000593827 ADAMTS7Q9UKP4 1686 aa26.6■■□□□ 1.85
COPE-204ENST00000593827 CEMIPQ8WUJ3 1361 aa26.6■■□□□ 1.85
COPE-204ENST00000593827 CRKLP46109 303 aaKnown RBP26.6■■□□□ 1.85
COPE-204ENST00000593827 MAPK8IP3Q9UPT6 1336 aa26.6■■□□□ 1.85
COPE-204ENST00000593827 RFC4P35249 363 aa26.59■■□□□ 1.85
COPE-204ENST00000593827 KLHL34Q8N239 644 aa26.59■■□□□ 1.85
COPE-204ENST00000593827 ZNF790Q6PG37 636 aa26.58■■□□□ 1.85
COPE-204ENST00000593827 AMIGO3Q86WK7 504 aa26.58■■□□□ 1.85
COPE-204ENST00000593827 TEX13AQ9BXU3 409 aaPredicted RBP26.58■■□□□ 1.85
COPE-204ENST00000593827 NLGN1Q8N2Q7 840 aa26.57■■□□□ 1.84
COPE-204ENST00000593827 UBR3Q6ZT12 1888 aa26.56■■□□□ 1.84
COPE-204ENST00000593827 BTBD11A6QL63 1104 aa26.56■■□□□ 1.84
COPE-204ENST00000593827 STARD3NLO95772 234 aa26.56■■□□□ 1.84
COPE-204ENST00000593827 DNAJC10Q8IXB1 793 aa26.56■■□□□ 1.84
COPE-204ENST00000593827 CCDC87Q9NVE4 849 aa26.56■■□□□ 1.84
COPE-204ENST00000593827 ARHGEF1Q92888 912 aaKnown RBP26.55■■□□□ 1.84
COPE-204ENST00000593827 FMNL2Q96PY5 1086 aa26.55■■□□□ 1.84
COPE-204ENST00000593827 COL24A1Q17RW2 1714 aa26.54■■□□□ 1.84
COPE-204ENST00000593827 CYP19A1P11511 503 aaPredicted RBP26.53■■□□□ 1.84
COPE-204ENST00000593827 SMIM5Q71RC9 77 aa26.53■■□□□ 1.84
COPE-204ENST00000593827 PLEKHF1Q96S99 279 aa26.53■■□□□ 1.84
COPE-204ENST00000593827 PRKRIP1Q9H875 184 aaPredicted RBP26.53■■□□□ 1.84
COPE-204ENST00000593827 CD2APQ9Y5K6 639 aa26.53■■□□□ 1.84
COPE-204ENST00000593827 CICQ96RK0 1608 aaPredicted RBP26.53■■□□□ 1.84
COPE-204ENST00000593827 WDR43Q15061 677 aaKnown RBP eCLIP26.52■■□□□ 1.84
COPE-204ENST00000593827 NFE2L2Q16236 605 aa26.52■■□□□ 1.84
COPE-204ENST00000593827 KCPQ6ZWJ8 1503 aa26.52■■□□□ 1.84
COPE-204ENST00000593827 MCM10Q7L590 875 aa26.52■■□□□ 1.84
COPE-204ENST00000593827 INTS5Q6P9B9 1019 aaKnown RBP26.51■■□□□ 1.83
COPE-204ENST00000593827 COL5A3P25940 1745 aaPredicted RBP26.51■■□□□ 1.83
COPE-204ENST00000593827 HEG1Q9ULI3 1381 aa26.5■■□□□ 1.83
COPE-204ENST00000593827 ZNF316A6NFI3 1004 aaPredicted RBP26.5■■□□□ 1.83
COPE-204ENST00000593827 PNISRQ8TF01 805 aaKnown RBP26.5■■□□□ 1.83
COPE-204ENST00000593827 ZNF496Q96IT1 587 aaPredicted RBP26.5■■□□□ 1.83
COPE-204ENST00000593827 ZPR1O75312 459 aa26.48■■□□□ 1.83
COPE-204ENST00000593827 TAF7Q15545 349 aaPredicted RBP26.48■■□□□ 1.83
COPE-204ENST00000593827 NPM2Q86SE8 214 aaKnown RBP26.48■■□□□ 1.83
COPE-204ENST00000593827 MMP10P09238 476 aa26.47■■□□□ 1.83
COPE-204ENST00000593827 YY1P25490 414 aa26.47■■□□□ 1.83
COPE-204ENST00000593827 LMOD3Q0VAK6 560 aa26.47■■□□□ 1.83
COPE-204ENST00000593827 SOS1Q07889 1333 aaPredicted RBP26.46■■□□□ 1.83
COPE-204ENST00000593827 GYS1P13807 737 aa26.46■■□□□ 1.83
COPE-204ENST00000593827 GPR162Q16538 588 aa26.46■■□□□ 1.83
COPE-204ENST00000593827 TJP1Q07157 1748 aa26.45■■□□□ 1.83
COPE-204ENST00000593827 USP42Q9H9J4 1324 aaKnown RBP26.45■■□□□ 1.83
COPE-204ENST00000593827 A0A087WZG4 1122 aa26.45■■□□□ 1.82
COPE-204ENST00000593827 DCTN1Q14203 1278 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms