RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 LARP1Q6PKG0 1096 aaKnown RBP13.38□□□□□ -0.27
ZNF540-208ENST00000589857 CDCA7Q9BWT1 371 aaPredicted RBP13.38□□□□□ -0.27
ZNF540-208ENST00000589857 PDZRN3Q9UPQ7 1066 aa13.38□□□□□ -0.27
ZNF540-208ENST00000589857 LAS1LQ9Y4W2 734 aaKnown RBP13.38□□□□□ -0.27
ZNF540-208ENST00000589857 EIF4A2Q14240 407 aaKnown RBP13.37□□□□□ -0.27
ZNF540-208ENST00000589857 PHACTR3Q96KR7 559 aa13.37□□□□□ -0.27
ZNF540-208ENST00000589857 VAMP4O75379 141 aa13.36□□□□□ -0.27
ZNF540-208ENST00000589857 GCP02774 474 aa13.36□□□□□ -0.27
ZNF540-208ENST00000589857 DDB1Q16531 1140 aa13.36□□□□□ -0.27
ZNF540-208ENST00000589857 TWISTNBQ3B726 338 aaPredicted RBP13.36□□□□□ -0.27
ZNF540-208ENST00000589857 MRPL50Q8N5N7 158 aaKnown RBP13.36□□□□□ -0.27
ZNF540-208ENST00000589857 ZBTB40Q9NUA8 1239 aa13.36□□□□□ -0.27
ZNF540-208ENST00000589857 TNS1Q9HBL0 1735 aaKnown RBP13.36□□□□□ -0.27
ZNF540-208ENST00000589857 HTATSF1O43719 755 aaKnown RBP13.35□□□□□ -0.27
ZNF540-208ENST00000589857 TMEM57Q8N5G2 664 aa13.35□□□□□ -0.27
ZNF540-208ENST00000589857 GAS2L2Q8NHY3 880 aa13.35□□□□□ -0.27
ZNF540-208ENST00000589857 GCC1Q96CN9 775 aa13.35□□□□□ -0.27
ZNF540-208ENST00000589857 BCL11BQ9C0K0 894 aaPredicted RBP13.35□□□□□ -0.27
ZNF540-208ENST00000589857 MBIPQ9NS73 344 aa13.35□□□□□ -0.27
ZNF540-208ENST00000589857 OVOS2A0A0G2JMS6 1433 aa13.35□□□□□ -0.27
ZNF540-208ENST00000589857 SULT6B1Q6IMI4 303 aa13.34□□□□□ -0.27
ZNF540-208ENST00000589857 SMC5Q8IY18 1101 aa13.34□□□□□ -0.27
ZNF540-208ENST00000589857 RTF1Q92541 710 aaKnown RBP13.34□□□□□ -0.27
ZNF540-208ENST00000589857 SOS1Q07889 1333 aaPredicted RBP13.34□□□□□ -0.27
ZNF540-208ENST00000589857 RTL1A6NKG5 1358 aa13.33□□□□□ -0.27
ZNF540-208ENST00000589857 CRB1P82279 1406 aa13.33□□□□□ -0.28
ZNF540-208ENST00000589857 TOM1L2Q6ZVM7 507 aa13.33□□□□□ -0.28
ZNF540-208ENST00000589857 SKAP1Q86WV1 359 aa13.33□□□□□ -0.28
ZNF540-208ENST00000589857 TNNQ9UQP3 1299 aa13.33□□□□□ -0.28
ZNF540-208ENST00000589857 ABCC4O15439 1325 aa13.33□□□□□ -0.28
ZNF540-208ENST00000589857 MAP2P11137 1827 aaKnown RBP13.32□□□□□ -0.28
ZNF540-208ENST00000589857 AMPHP49418 695 aa13.32□□□□□ -0.28
ZNF540-208ENST00000589857 CHMP4AQ9BY43 222 aa13.32□□□□□ -0.28
ZNF540-208ENST00000589857 STK32BQ9NY57 414 aa13.32□□□□□ -0.28
ZNF540-208ENST00000589857 USP19O94966 1318 aa13.32□□□□□ -0.28
ZNF540-208ENST00000589857 PTPRCP08575 1304 aa13.32□□□□□ -0.28
ZNF540-208ENST00000589857 ZBTB7CA1YPR0 619 aa13.31□□□□□ -0.28
ZNF540-208ENST00000589857 CHL1O00533 1208 aa13.31□□□□□ -0.28
ZNF540-208ENST00000589857 FBLN1P23142 703 aa13.31□□□□□ -0.28
ZNF540-208ENST00000589857 NLRP6P59044 892 aa13.31□□□□□ -0.28
ZNF540-208ENST00000589857 KDRP35968 1356 aa13.31□□□□□ -0.28
ZNF540-208ENST00000589857 KCNH5Q8NCM2 988 aa13.3□□□□□ -0.28
ZNF540-208ENST00000589857 BABAM1Q9NWV8 329 aa13.3□□□□□ -0.28
ZNF540-208ENST00000589857 MAP3K19Q56UN5 1328 aa13.3□□□□□ -0.28
ZNF540-208ENST00000589857 CAMTA1Q9Y6Y1 1673 aa13.29□□□□□ -0.28
ZNF540-208ENST00000589857 NUCB1Q02818 461 aa13.29□□□□□ -0.28
ZNF540-208ENST00000589857 NBR1Q14596 966 aa13.29□□□□□ -0.28
ZNF540-208ENST00000589857 IGSF1Q8N6C5 1336 aa13.29□□□□□ -0.28
ZNF540-208ENST00000589857 PHRF1Q9P1Y6 1649 aaKnown RBP13.28□□□□□ -0.28
ZNF540-208ENST00000589857 RREB1Q92766 1687 aa13.28□□□□□ -0.28
ZNF540-208ENST00000589857 CRYBG1Q9Y4K1 1723 aa13.28□□□□□ -0.28
ZNF540-208ENST00000589857 EXOC5O00471 708 aa13.28□□□□□ -0.28
ZNF540-208ENST00000589857 ZBTB7BO15156 539 aaPredicted RBP13.28□□□□□ -0.28
ZNF540-208ENST00000589857 CSB-PGBD3P0DP91 1061 aa13.28□□□□□ -0.28
ZNF540-208ENST00000589857 THUMPD2Q9BTF0 503 aaKnown RBP13.28□□□□□ -0.28
ZNF540-208ENST00000589857 COL5A2P05997 1499 aaPredicted RBP13.28□□□□□ -0.28
ZNF540-208ENST00000589857 USP54Q70EL1 1684 aa13.28□□□□□ -0.28
ZNF540-208ENST00000589857 HSP90AB2PQ58FF8 381 aa13.27□□□□□ -0.29
ZNF540-208ENST00000589857 CHD1LQ86WJ1 897 aa13.27□□□□□ -0.29
ZNF540-208ENST00000589857 MTFR1LQ9H019 292 aa13.27□□□□□ -0.29
ZNF540-208ENST00000589857 BCL9O00512 1426 aa13.26□□□□□ -0.29
ZNF540-208ENST00000589857 NUP188Q5SRE5 1749 aa13.26□□□□□ -0.29
ZNF540-208ENST00000589857 INTS3Q68E01 1043 aaKnown RBP13.26□□□□□ -0.29
ZNF540-208ENST00000589857 VIRMAQ69YN4 1812 aaKnown RBP13.26□□□□□ -0.29
ZNF540-208ENST00000589857 AEBP1Q8IUX7 1158 aa13.26□□□□□ -0.29
ZNF540-208ENST00000589857 WDR17Q8IZU2 1322 aa13.26□□□□□ -0.29
ZNF540-208ENST00000589857 C8orf58Q8NAV2 365 aa13.26□□□□□ -0.29
ZNF540-208ENST00000589857 TBC1D32Q96NH3 1257 aa13.26□□□□□ -0.29
ZNF540-208ENST00000589857 ZBTB7AO95365 584 aa13.25□□□□□ -0.29
ZNF540-208ENST00000589857 SLC15A2Q16348 729 aa13.25□□□□□ -0.29
ZNF540-208ENST00000589857 TSPYL6Q8N831 410 aa13.25□□□□□ -0.29
ZNF540-208ENST00000589857 ZNF784Q8NCA9 323 aaPredicted RBP13.25□□□□□ -0.29
ZNF540-208ENST00000589857 TXNRD1Q16881 649 aa13.24□□□□□ -0.29
ZNF540-208ENST00000589857 BMP2KLQ5H9B9 411 aa13.24□□□□□ -0.29
ZNF540-208ENST00000589857 RPAP2Q8IXW5 612 aaPredicted RBP13.24□□□□□ -0.29
ZNF540-208ENST00000589857 CARD10Q9BWT7 1032 aa13.24□□□□□ -0.29
ZNF540-208ENST00000589857 STK31Q9BXU1 1019 aa13.24□□□□□ -0.29
ZNF540-208ENST00000589857 TSPYL4Q9UJ04 414 aa13.24□□□□□ -0.29
ZNF540-208ENST00000589857 ATF5Q9Y2D1 282 aaPredicted RBP13.24□□□□□ -0.29
ZNF540-208ENST00000589857 PEAK1Q9H792 1746 aa13.24□□□□□ -0.29
ZNF540-208ENST00000589857 PARP4Q9UKK3 1724 aaKnown RBP13.24□□□□□ -0.29
ZNF540-208ENST00000589857 RGPD3A6NKT7 1758 aaPredicted RBP13.23□□□□□ -0.29
ZNF540-208ENST00000589857 RGPD4Q7Z3J3 1758 aa13.23□□□□□ -0.29
ZNF540-208ENST00000589857 HMMRO75330 724 aa13.23□□□□□ -0.29
ZNF540-208ENST00000589857 HOXC9P31274 260 aa13.23□□□□□ -0.29
ZNF540-208ENST00000589857 CCT4P50991 539 aaKnown RBP13.23□□□□□ -0.29
ZNF540-208ENST00000589857 SYT17Q9BSW7 474 aa13.23□□□□□ -0.29
ZNF540-208ENST00000589857 LMO7Q8WWI1 1683 aa13.22□□□□□ -0.29
ZNF540-208ENST00000589857 GNAT3A8MTJ3 354 aa13.22□□□□□ -0.29
ZNF540-208ENST00000589857 ELL2O00472 640 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-208ENST00000589857 MARCH10Q8NA82 808 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-208ENST00000589857 ARXQ96QS3 562 aa13.22□□□□□ -0.29
ZNF540-208ENST00000589857 EYA1Q99502 592 aa13.22□□□□□ -0.29
ZNF540-208ENST00000589857 FHDC1Q9C0D6 1143 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-208ENST00000589857 ANO8Q9HCE9 1232 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-208ENST00000589857 PIK3C2AO00443 1686 aa13.21□□□□□ -0.29
ZNF540-208ENST00000589857 MAP3K5Q99683 1374 aa13.21□□□□□ -0.29
ZNF540-208ENST00000589857 SOX12O15370 315 aa13.21□□□□□ -0.29
ZNF540-208ENST00000589857 DEKP35659 375 aaKnown RBP13.21□□□□□ -0.29
ZNF540-208ENST00000589857 PTGER2P43116 358 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms