RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 KDRP35968 1356 aa15.45■□□□□ 0.06
VPS4B-202ENST00000588059 C4AP0C0L4 1744 aa15.45■□□□□ 0.06
VPS4B-202ENST00000588059 COL5A3P25940 1745 aaPredicted RBP15.45■□□□□ 0.06
VPS4B-202ENST00000588059 TOMM70O94826 608 aa15.44■□□□□ 0.06
VPS4B-202ENST00000588059 ATP6V1AP38606 617 aa15.44■□□□□ 0.06
VPS4B-202ENST00000588059 TMF1P82094 1093 aa15.44■□□□□ 0.06
VPS4B-202ENST00000588059 DNAJC5GQ8N7S2 189 aa15.44■□□□□ 0.06
VPS4B-202ENST00000588059 ARFGEF1Q9Y6D6 1849 aa15.43■□□□□ 0.06
VPS4B-202ENST00000588059 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.43■□□□□ 0.062e-6■■□□□ 12.4
VPS4B-202ENST00000588059 BCS1LQ9Y276 419 aa15.43■□□□□ 0.06
VPS4B-202ENST00000588059 TGFB2P61812 414 aa15.42■□□□□ 0.06
VPS4B-202ENST00000588059 NMRK2Q9NPI5 230 aa15.42■□□□□ 0.06
VPS4B-202ENST00000588059 ATG3Q9NT62 314 aa15.42■□□□□ 0.06
VPS4B-202ENST00000588059 A0A0G2JLW4 131 aa15.41■□□□□ 0.06
VPS4B-202ENST00000588059 PHKG2P15735 406 aa15.41■□□□□ 0.06
VPS4B-202ENST00000588059 EYA1Q99502 592 aa15.41■□□□□ 0.06
VPS4B-202ENST00000588059 CARD14Q9BXL6 1004 aa15.41■□□□□ 0.06
VPS4B-202ENST00000588059 WASHC2AQ641Q2 1341 aa15.41■□□□□ 0.06
VPS4B-202ENST00000588059 MYH14Q7Z406 1995 aaKnown RBP15.4■□□□□ 0.06
VPS4B-202ENST00000588059 PPM1GO15355 546 aaPredicted RBP15.4■□□□□ 0.06
VPS4B-202ENST00000588059 IFNL2Q8IZJ0 200 aa15.4■□□□□ 0.06
VPS4B-202ENST00000588059 DPEP1P16444 411 aa15.39■□□□□ 0.05
VPS4B-202ENST00000588059 ARHGAP27Q6ZUM4 889 aa15.39■□□□□ 0.05
VPS4B-202ENST00000588059 NLGN1Q8N2Q7 840 aa15.39■□□□□ 0.05
VPS4B-202ENST00000588059 SLC4A9Q96Q91 983 aa15.39■□□□□ 0.05
VPS4B-202ENST00000588059 RTCBQ9Y3I0 505 aaKnown RBP15.39■□□□□ 0.05
VPS4B-202ENST00000588059 TRAPPC3LQ5T215 181 aa15.38■□□□□ 0.05
VPS4B-202ENST00000588059 CCDC87Q9NVE4 849 aa15.38■□□□□ 0.05
VPS4B-202ENST00000588059 PLEKHG2Q9H7P9 1386 aa15.37■□□□□ 0.05
VPS4B-202ENST00000588059 FCHSD2O94868 740 aa15.37■□□□□ 0.05
VPS4B-202ENST00000588059 GYS1P13807 737 aa15.37■□□□□ 0.05
VPS4B-202ENST00000588059 ADRA2BP18089 450 aa15.37■□□□□ 0.05
VPS4B-202ENST00000588059 CDCA8Q53HL2 280 aa15.37■□□□□ 0.05
VPS4B-202ENST00000588059 RBM46Q8TBY0 533 aaKnown RBP15.37■□□□□ 0.05
VPS4B-202ENST00000588059 ARHGEF1Q92888 912 aaKnown RBP15.37■□□□□ 0.05
VPS4B-202ENST00000588059 CNTNAP4Q9C0A0 1308 aa15.37■□□□□ 0.05
VPS4B-202ENST00000588059 TNRC6CQ9HCJ0 1690 aaKnown RBP15.36■□□□□ 0.05
VPS4B-202ENST00000588059 RC3H1Q5TC82 1133 aaKnown RBP15.36■□□□□ 0.05
VPS4B-202ENST00000588059 SBF1O95248 1867 aa15.35■□□□□ 0.05
VPS4B-202ENST00000588059 KCPQ6ZWJ8 1503 aa15.35■□□□□ 0.05
VPS4B-202ENST00000588059 KCNA3P22001 575 aa15.35■□□□□ 0.05
VPS4B-202ENST00000588059 HTRA3P83110 453 aa15.35■□□□□ 0.05
VPS4B-202ENST00000588059 C9orf131Q5VYM1 1079 aa15.35■□□□□ 0.05
VPS4B-202ENST00000588059 RBM42Q9BTD8 480 aaKnown RBP15.35■□□□□ 0.05
VPS4B-202ENST00000588059 RPS6KA4O75676 772 aa15.34■□□□□ 0.05
VPS4B-202ENST00000588059 RFC4P35249 363 aa15.34■□□□□ 0.05
VPS4B-202ENST00000588059 KLRG1Q96E93 195 aa15.34■□□□□ 0.05
VPS4B-202ENST00000588059 POLKQ9UBT6 870 aa15.34■□□□□ 0.05
VPS4B-202ENST00000588059 PARP3Q9Y6F1 533 aa15.34■□□□□ 0.05
VPS4B-202ENST00000588059 KDM6AO15550 1401 aaPredicted RBP15.34■□□□□ 0.05
VPS4B-202ENST00000588059 ERVV-2B6SEH9 535 aa15.33■□□□□ 0.04
VPS4B-202ENST00000588059 EIF4A2Q14240 407 aaKnown RBP15.33■□□□□ 0.04
VPS4B-202ENST00000588059 JMYQ8N9B5 988 aa15.33■□□□□ 0.04
VPS4B-202ENST00000588059 DCAF5Q96JK2 942 aa15.33■□□□□ 0.04
VPS4B-202ENST00000588059 TJP1Q07157 1748 aa15.33■□□□□ 0.04
VPS4B-202ENST00000588059 ADAMTS7Q9UKP4 1686 aa15.32■□□□□ 0.04
VPS4B-202ENST00000588059 FSTL1Q12841 308 aa15.32■□□□□ 0.04
VPS4B-202ENST00000588059 C16orf71Q8IYS4 520 aaPredicted RBP15.32■□□□□ 0.04
VPS4B-202ENST00000588059 COL13A1Q5TAT6 717 aaPredicted RBP15.31■□□□□ 0.04
VPS4B-202ENST00000588059 PIM2Q9P1W9 311 aa15.31■□□□□ 0.04
VPS4B-202ENST00000588059 HSP90AB1P08238 724 aaKnown RBP15.3■□□□□ 0.04
VPS4B-202ENST00000588059 DDR1Q08345 913 aa15.3■□□□□ 0.04
VPS4B-202ENST00000588059 TRIM26Q12899 539 aaPredicted RBP15.3■□□□□ 0.04
VPS4B-202ENST00000588059 DALRD3Q5D0E6 543 aaKnown RBP15.3■□□□□ 0.04
VPS4B-202ENST00000588059 KDM2BQ8NHM5 1336 aa15.3■□□□□ 0.04
VPS4B-202ENST00000588059 RNF181Q9P0P0 153 aa15.3■□□□□ 0.04
VPS4B-202ENST00000588059 USP42Q9H9J4 1324 aaKnown RBP15.29■□□□□ 0.04
VPS4B-202ENST00000588059 FKBP8Q14318 412 aa15.29■□□□□ 0.04
VPS4B-202ENST00000588059 SRP68Q9UHB9 627 aaKnown RBP15.29■□□□□ 0.04
VPS4B-202ENST00000588059 CRKLP46109 303 aaKnown RBP15.28■□□□□ 0.04
VPS4B-202ENST00000588059 AFDNP55196 1824 aaKnown RBP15.27■□□□□ 0.04
VPS4B-202ENST00000588059 SCN11AQ9UI33 1791 aa15.27■□□□□ 0.04
VPS4B-202ENST00000588059 DLEC1Q9Y238 1755 aa15.27■□□□□ 0.04
VPS4B-202ENST00000588059 CHRNA5P30532 468 aa15.27■□□□□ 0.04
VPS4B-202ENST00000588059 TNNT2P45379 298 aaPredicted RBP15.27■□□□□ 0.04
VPS4B-202ENST00000588059 CABP4P57796 275 aa15.27■□□□□ 0.04
VPS4B-202ENST00000588059 ZNF530Q6P9A1 599 aaPredicted RBP15.27■□□□□ 0.04
VPS4B-202ENST00000588059 RRAGCQ9HB90 399 aa15.27■□□□□ 0.04
VPS4B-202ENST00000588059 PTCD1O75127 700 aaKnown RBP15.26■□□□□ 0.03
VPS4B-202ENST00000588059 PLEKHO1Q53GL0 409 aaPredicted RBP15.26■□□□□ 0.03
VPS4B-202ENST00000588059 TIAM2Q8IVF5 1701 aa15.26■□□□□ 0.03
VPS4B-202ENST00000588059 POLRMTO00411 1230 aaKnown RBP15.25■□□□□ 0.03
VPS4B-202ENST00000588059 SMC1BQ8NDV3 1235 aa15.25■□□□□ 0.03
VPS4B-202ENST00000588059 NRXN2Q9P2S2 1712 aa15.25■□□□□ 0.03
VPS4B-202ENST00000588059 PCNTO95613 3336 aa15.24■□□□□ 0.03
VPS4B-202ENST00000588059 AMOTQ4VCS5 1084 aa15.24■□□□□ 0.03
VPS4B-202ENST00000588059 CCDC88AQ3V6T2 1871 aa15.24■□□□□ 0.03
VPS4B-202ENST00000588059 ZC3H4Q9UPT8 1303 aaKnown RBP15.23■□□□□ 0.03
VPS4B-202ENST00000588059 CAPN15O75808 1086 aa15.23■□□□□ 0.03
VPS4B-202ENST00000588059 TM4SF1P30408 202 aa15.23■□□□□ 0.03
VPS4B-202ENST00000588059 MTHFSP49914 203 aa15.23■□□□□ 0.03
VPS4B-202ENST00000588059 RASSF7Q02833 373 aa15.23■□□□□ 0.03
VPS4B-202ENST00000588059 INTS5Q6P9B9 1019 aaKnown RBP15.23■□□□□ 0.03
VPS4B-202ENST00000588059 AEBP1Q8IUX7 1158 aa15.23■□□□□ 0.03
VPS4B-202ENST00000588059 TNS4Q8IZW8 715 aa15.23■□□□□ 0.03
VPS4B-202ENST00000588059 VIRMAQ69YN4 1812 aaKnown RBP15.22■□□□□ 0.03
VPS4B-202ENST00000588059 NFATC2IPQ8NCF5 419 aa15.22■□□□□ 0.03
VPS4B-202ENST00000588059 PRELPP51888 382 aa15.21■□□□□ 0.03
VPS4B-202ENST00000588059 C1orf141Q5JVX7 400 aa15.21■□□□□ 0.03
VPS4B-202ENST00000588059 SOS1Q07889 1333 aaPredicted RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms