RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 COL16A1Q07092 1604 aaPredicted RBP25.21■■□□□ 1.63
TRIM47-204ENST00000587339 VIRMAQ69YN4 1812 aaKnown RBP25.21■■□□□ 1.63
TRIM47-204ENST00000587339 PTPRCP08575 1304 aa25.21■■□□□ 1.63
TRIM47-204ENST00000587339 CYP27B1O15528 508 aa25.21■■□□□ 1.63
TRIM47-204ENST00000587339 PCDHB15Q9Y5E8 787 aa25.21■■□□□ 1.63
TRIM47-204ENST00000587339 KDM6AO15550 1401 aaPredicted RBP25.2■■□□□ 1.62
TRIM47-204ENST00000587339 PARP4Q9UKK3 1724 aaKnown RBP25.2■■□□□ 1.62
TRIM47-204ENST00000587339 IGHDP01880 384 aa25.2■■□□□ 1.62
TRIM47-204ENST00000587339 IL2RBP14784 551 aa25.2■■□□□ 1.62
TRIM47-204ENST00000587339 HSP90AB1P08238 724 aaKnown RBP25.19■■□□□ 1.62
TRIM47-204ENST00000587339 DCAF5Q96JK2 942 aa25.19■■□□□ 1.62
TRIM47-204ENST00000587339 COL14A1Q05707 1796 aaKnown RBP25.19■■□□□ 1.62
TRIM47-204ENST00000587339 UBAP1LF5GYI3 381 aa25.18■■□□□ 1.62
TRIM47-204ENST00000587339 KCNQ3O43525 872 aa25.18■■□□□ 1.62
TRIM47-204ENST00000587339 AEBP2Q6ZN18 517 aaPredicted RBP25.18■■□□□ 1.62
TRIM47-204ENST00000587339 ZCRB1Q8TBF4 217 aaKnown RBP25.18■■□□□ 1.62
TRIM47-204ENST00000587339 CHMP4BQ9H444 224 aaKnown RBP25.18■■□□□ 1.62
TRIM47-204ENST00000587339 ZBTB40Q9NUA8 1239 aa25.18■■□□□ 1.62
TRIM47-204ENST00000587339 SLC52A2Q9HAB3 445 aa25.18■■□□□ 1.62
TRIM47-204ENST00000587339 HOXB7P09629 217 aa25.17■■□□□ 1.62
TRIM47-204ENST00000587339 NECTIN2Q92692 538 aa25.17■■□□□ 1.62
TRIM47-204ENST00000587339 SCN11AQ9UI33 1791 aa25.16■■□□□ 1.62
TRIM47-204ENST00000587339 PCDH11XQ9BZA7 1347 aa25.16■■□□□ 1.62
TRIM47-204ENST00000587339 PCDH11YQ9BZA8 1340 aa25.16■■□□□ 1.62
TRIM47-204ENST00000587339 HDGFL1Q5TGJ6 251 aa25.16■■□□□ 1.62
TRIM47-204ENST00000587339 CHMP4AQ9BY43 222 aa25.16■■□□□ 1.62
TRIM47-204ENST00000587339 SIPA1L3O60292 1781 aaPredicted RBP25.16■■□□□ 1.62
TRIM47-204ENST00000587339 RGS12O14924 1447 aa25.15■■□□□ 1.62
TRIM47-204ENST00000587339 ZBTB7BO15156 539 aaPredicted RBP25.15■■□□□ 1.62
TRIM47-204ENST00000587339 USP35Q9P2H5 1018 aa25.15■■□□□ 1.62
TRIM47-204ENST00000587339 NFATC2IPQ8NCF5 419 aa25.14■■□□□ 1.62
TRIM47-204ENST00000587339 RWDD1Q9H446 243 aaPredicted RBP25.14■■□□□ 1.62
TRIM47-204ENST00000587339 G2E3Q7L622 706 aa25.14■■□□□ 1.61
TRIM47-204ENST00000587339 INTS3Q68E01 1043 aaKnown RBP25.12■■□□□ 1.61
TRIM47-204ENST00000587339 EIF2S2P20042 333 aaKnown RBP25.12■■□□□ 1.61
TRIM47-204ENST00000587339 ADAMTS2O95450 1211 aa25.11■■□□□ 1.61
TRIM47-204ENST00000587339 FLIIQ13045 1269 aa25.11■■□□□ 1.61
TRIM47-204ENST00000587339 ZNF790Q6PG37 636 aa25.11■■□□□ 1.61
TRIM47-204ENST00000587339 MRC1P22897 1456 aa25.11■■□□□ 1.61
TRIM47-204ENST00000587339 HEG1Q9ULI3 1381 aa25.1■■□□□ 1.61
TRIM47-204ENST00000587339 GIGYF1O75420 1035 aaPredicted RBP25.1■■□□□ 1.61
TRIM47-204ENST00000587339 SKAP1Q86WV1 359 aa25.09■■□□□ 1.61
TRIM47-204ENST00000587339 CABP4P57796 275 aa25.08■■□□□ 1.61
TRIM47-204ENST00000587339 FKBP5Q13451 457 aaPredicted RBP25.08■■□□□ 1.61
TRIM47-204ENST00000587339 SLC39A6Q13433 755 aa25.08■■□□□ 1.6
TRIM47-204ENST00000587339 HDAC1Q13547 482 aaPredicted RBP25.08■■□□□ 1.6
TRIM47-204ENST00000587339 DDX54Q8TDD1 881 aaKnown RBP25.08■■□□□ 1.6
TRIM47-204ENST00000587339 NUTM2BA6NNL0 878 aaPredicted RBP25.07■■□□□ 1.6
TRIM47-204ENST00000587339 NUTM2EB1AL46 878 aaPredicted RBP25.07■■□□□ 1.6
TRIM47-204ENST00000587339 NUTM2AQ8IVF1 878 aaPredicted RBP25.07■■□□□ 1.6
TRIM47-204ENST00000587339 CACNA1FO60840 1977 aa25.07■■□□□ 1.6
TRIM47-204ENST00000587339 NKX1-1Q15270 411 aaPredicted RBP25.06■■□□□ 1.6
TRIM47-204ENST00000587339 F6X3S4 739 aa25.06■■□□□ 1.6
TRIM47-204ENST00000587339 CHPF2Q9P2E5 772 aa25.06■■□□□ 1.6
TRIM47-204ENST00000587339 SLC4A10Q6U841 1118 aa25.05■■□□□ 1.6
TRIM47-204ENST00000587339 TTC5Q8N0Z6 440 aa25.05■■□□□ 1.6
TRIM47-204ENST00000587339 CCT4P50991 539 aaKnown RBP25.04■■□□□ 1.6
TRIM47-204ENST00000587339 DBF4Q9UBU7 674 aaPredicted RBP25.04■■□□□ 1.6
TRIM47-204ENST00000587339 PLCH1Q4KWH8 1693 aa25.03■■□□□ 1.6
TRIM47-204ENST00000587339 ERVV-2B6SEH9 535 aa25.03■■□□□ 1.6
TRIM47-204ENST00000587339 PHAXQ9H814 394 aaKnown RBP25.03■■□□□ 1.6
TRIM47-204ENST00000587339 SHANK3Q9BYB0 1731 aa25.03■■□□□ 1.6
TRIM47-204ENST00000587339 C1orf115Q9H7X2 142 aa25.02■■□□□ 1.6
TRIM47-204ENST00000587339 PRAMEF22A3QJZ6 481 aa25.02■■□□□ 1.6
TRIM47-204ENST00000587339 DISP2A7MBM2 1401 aa25.01■■□□□ 1.59
TRIM47-204ENST00000587339 CERKQ8TCT0 537 aa25■■□□□ 1.59
TRIM47-204ENST00000587339 ZNF496Q96IT1 587 aaPredicted RBP25■■□□□ 1.59
TRIM47-204ENST00000587339 RGS3P49796 1198 aa25■■□□□ 1.59
TRIM47-204ENST00000587339 RBM19Q9Y4C8 960 aaKnown RBP25■■□□□ 1.59
TRIM47-204ENST00000587339 FMNL2Q96PY5 1086 aa24.98■■□□□ 1.59
TRIM47-204ENST00000587339 JCADQ9P266 1359 aa24.98■■□□□ 1.59
TRIM47-204ENST00000587339 ANXA1P04083 346 aa24.97■■□□□ 1.59
TRIM47-204ENST00000587339 SNRPA1P09661 255 aaKnown RBP24.96■■□□□ 1.59
TRIM47-204ENST00000587339 MEIS3Q99687 375 aa24.96■■□□□ 1.59
TRIM47-204ENST00000587339 NRAPQ86VF7 1730 aa24.96■■□□□ 1.59
TRIM47-204ENST00000587339 PXDNLA1KZ92 1463 aa24.96■■□□□ 1.59
TRIM47-204ENST00000587339 SMC5Q8IY18 1101 aa24.96■■□□□ 1.59
TRIM47-204ENST00000587339 PDZRN3Q9UPQ7 1066 aa24.96■■□□□ 1.59
TRIM47-204ENST00000587339 SPATA31A1Q5TZJ5 1347 aa24.95■■□□□ 1.58
TRIM47-204ENST00000587339 HYPKQ9NX55 129 aa24.95■■□□□ 1.58
TRIM47-204ENST00000587339 THRAP3Q9Y2W1 955 aaKnown RBP24.95■■□□□ 1.58
TRIM47-204ENST00000587339 EXOC5O00471 708 aa24.94■■□□□ 1.58
TRIM47-204ENST00000587339 DDX21Q9NR30 783 aaKnown RBP eCLIP24.94■■□□□ 1.58
TRIM47-204ENST00000587339 SLIT2O94813 1529 aa24.94■■□□□ 1.58
TRIM47-204ENST00000587339 PROSER3Q2NL68 480 aa24.94■■□□□ 1.58
TRIM47-204ENST00000587339 CDCA7Q9BWT1 371 aaPredicted RBP24.94■■□□□ 1.58
TRIM47-204ENST00000587339 C5P01031 1676 aa24.93■■□□□ 1.58
TRIM47-204ENST00000587339 SIRT2Q8IXJ6 389 aa24.93■■□□□ 1.58
TRIM47-204ENST00000587339 NWD2Q9ULI1 1742 aa24.93■■□□□ 1.58
TRIM47-204ENST00000587339 PI4KAP2A4QPH2 592 aa24.92■■□□□ 1.58
TRIM47-204ENST00000587339 PI4KAP1Q8N8J0 262 aa24.92■■□□□ 1.58
TRIM47-204ENST00000587339 TMOD3Q9NYL9 352 aa24.92■■□□□ 1.58
TRIM47-204ENST00000587339 RPAP2Q8IXW5 612 aaPredicted RBP24.91■■□□□ 1.58
TRIM47-204ENST00000587339 DNAAF4Q8WXU2 420 aa24.91■■□□□ 1.58
TRIM47-204ENST00000587339 PDIA6Q15084 440 aa24.9■■□□□ 1.58
TRIM47-204ENST00000587339 USP16Q9Y5T5 823 aa24.9■■□□□ 1.58
TRIM47-204ENST00000587339 GCC1Q96CN9 775 aa24.9■■□□□ 1.58
TRIM47-204ENST00000587339 CCDC9Q9Y3X0 531 aaKnown RBP24.9■■□□□ 1.58
TRIM47-204ENST00000587339 ATP10DQ9P241 1426 aa24.9■■□□□ 1.58
TRIM47-204ENST00000587339 WNK3Q9BYP7 1800 aa24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms