RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 C5P01031 1676 aa10.76□□□□□ -0.69
VMP1-204ENST00000587259 TOGARAM1Q9Y4F4 1720 aa10.76□□□□□ -0.69
VMP1-204ENST00000587259 PUS7Q96PZ0 661 aaKnown RBP10.76□□□□□ -0.69
VMP1-204ENST00000587259 RTL1A6NKG5 1358 aa10.76□□□□□ -0.69
VMP1-204ENST00000587259 SPDYE4A6NLX3 237 aa10.75□□□□□ -0.69
VMP1-204ENST00000587259 PPM1GO15355 546 aaPredicted RBP10.75□□□□□ -0.69
VMP1-204ENST00000587259 PIGBQ92521 554 aa10.75□□□□□ -0.69
VMP1-204ENST00000587259 CARD14Q9BXL6 1004 aa10.75□□□□□ -0.69
VMP1-204ENST00000587259 GRIN3BO60391 1043 aa10.74□□□□□ -0.69
VMP1-204ENST00000587259 LINC00116Q8NCU8 138 aa10.74□□□□□ -0.69
VMP1-204ENST00000587259 PCDH11XQ9BZA7 1347 aa10.74□□□□□ -0.69
VMP1-204ENST00000587259 PCDH11YQ9BZA8 1340 aa10.74□□□□□ -0.69
VMP1-204ENST00000587259 SMG6Q86US8 1419 aaKnown RBP10.74□□□□□ -0.69
VMP1-204ENST00000587259 C4BP0C0L5 1744 aa10.73□□□□□ -0.69
VMP1-204ENST00000587259 TAF1LQ8IZX4 1826 aa10.73□□□□□ -0.69
VMP1-204ENST00000587259 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.73□□□□□ -0.69
VMP1-204ENST00000587259 AK7Q96M32 723 aa10.73□□□□□ -0.69
VMP1-204ENST00000587259 INSRP06213 1382 aa10.73□□□□□ -0.69
VMP1-204ENST00000587259 TMF1P82094 1093 aa10.72□□□□□ -0.69
VMP1-204ENST00000587259 ITPK1Q13572 414 aa10.72□□□□□ -0.69
VMP1-204ENST00000587259 ASAP1Q9ULH1 1129 aa10.72□□□□□ -0.69
VMP1-204ENST00000587259 IGSF1Q8N6C5 1336 aa10.72□□□□□ -0.69
VMP1-204ENST00000587259 FLT4P35916 1363 aa10.72□□□□□ -0.69
VMP1-204ENST00000587259 NSD3Q9BZ95 1437 aa10.72□□□□□ -0.69
VMP1-204ENST00000587259 ITGB4P16144 1822 aa10.72□□□□□ -0.69
VMP1-204ENST00000587259 CGNL1Q0VF96 1302 aa10.71□□□□□ -0.69
VMP1-204ENST00000587259 KIF20BQ96Q89 1820 aa10.71□□□□□ -0.69
VMP1-204ENST00000587259 GPBP1L1Q9HC44 474 aaPredicted RBP10.71□□□□□ -0.69
VMP1-204ENST00000587259 CD2APQ9Y5K6 639 aa10.71□□□□□ -0.69
VMP1-204ENST00000587259 ADCY9O60503 1353 aa10.7□□□□□ -0.7
VMP1-204ENST00000587259 LOC102724428A0A0B4J2F2 783 aa10.7□□□□□ -0.7
VMP1-204ENST00000587259 TNNT2P45379 298 aaPredicted RBP10.7□□□□□ -0.7
VMP1-204ENST00000587259 SIK1P57059 783 aa10.7□□□□□ -0.7
VMP1-204ENST00000587259 EYA1Q99502 592 aa10.7□□□□□ -0.7
VMP1-204ENST00000587259 UBR3Q6ZT12 1888 aa10.7□□□□□ -0.7
VMP1-204ENST00000587259 GNPATO15228 680 aa10.69□□□□□ -0.7
VMP1-204ENST00000587259 IFFO2Q5TF58 517 aa10.69□□□□□ -0.7
VMP1-204ENST00000587259 PKD1L3Q7Z443 1732 aa10.68□□□□□ -0.7
VMP1-204ENST00000587259 HSPA5P11021 654 aaKnown RBP10.68□□□□□ -0.7
VMP1-204ENST00000587259 FLAD1Q8NFF5 587 aa10.68□□□□□ -0.7
VMP1-204ENST00000587259 SMARCC1Q92922 1105 aaPredicted RBP10.68□□□□□ -0.7
VMP1-204ENST00000587259 POLR3GLQ9BT43 218 aa10.68□□□□□ -0.7
VMP1-204ENST00000587259 MAP2P11137 1827 aaKnown RBP10.68□□□□□ -0.7
VMP1-204ENST00000587259 MMP10P09238 476 aa10.67□□□□□ -0.7
VMP1-204ENST00000587259 ATP6V1AP38606 617 aa10.67□□□□□ -0.7
VMP1-204ENST00000587259 NKX1-1Q15270 411 aaPredicted RBP10.67□□□□□ -0.7
VMP1-204ENST00000587259 SLC4A9Q96Q91 983 aa10.67□□□□□ -0.7
VMP1-204ENST00000587259 ATG3Q9NT62 314 aa10.67□□□□□ -0.7
VMP1-204ENST00000587259 TMOD3Q9NYL9 352 aa10.67□□□□□ -0.7
VMP1-204ENST00000587259 NCAPD2Q15021 1401 aa10.67□□□□□ -0.7
VMP1-204ENST00000587259 A0A0G2JLW4 131 aa10.66□□□□□ -0.7
VMP1-204ENST00000587259 KIF3CO14782 793 aa10.66□□□□□ -0.7
VMP1-204ENST00000587259 PHKG2P15735 406 aa10.66□□□□□ -0.7
VMP1-204ENST00000587259 HSPA6P17066 643 aa10.66□□□□□ -0.7
VMP1-204ENST00000587259 POLKQ9UBT6 870 aa10.66□□□□□ -0.7
VMP1-204ENST00000587259 SPG7Q9UQ90 795 aa10.66□□□□□ -0.7
VMP1-204ENST00000587259 SSFA2P28290 1259 aa10.65□□□□□ -0.7
VMP1-204ENST00000587259 EIF4A2Q14240 407 aaKnown RBP10.65□□□□□ -0.7
VMP1-204ENST00000587259 PXDNLA1KZ92 1463 aa10.65□□□□□ -0.7
VMP1-204ENST00000587259 CICQ96RK0 1608 aaPredicted RBP10.65□□□□□ -0.7
VMP1-204ENST00000587259 N4BP2Q86UW6 1770 aaPredicted RBP10.65□□□□□ -0.71
VMP1-204ENST00000587259 WASHC2AQ641Q2 1341 aa10.64□□□□□ -0.71
VMP1-204ENST00000587259 SLC24A1O60721 1099 aa10.64□□□□□ -0.71
VMP1-204ENST00000587259 BCS1LQ9Y276 419 aa10.64□□□□□ -0.71
VMP1-204ENST00000587259 KIF24Q5T7B8 1368 aa10.64□□□□□ -0.71
VMP1-204ENST00000587259 C19orf67A6NJJ6 358 aa10.63□□□□□ -0.71
VMP1-204ENST00000587259 DPEP1P16444 411 aa10.63□□□□□ -0.71
VMP1-204ENST00000587259 IFNL2Q8IZJ0 200 aa10.63□□□□□ -0.71
VMP1-204ENST00000587259 ARHGEF1Q92888 912 aaKnown RBP10.63□□□□□ -0.71
VMP1-204ENST00000587259 KIAA1551Q9HCM1 1747 aa10.63□□□□□ -0.71
VMP1-204ENST00000587259 KDRP35968 1356 aa10.63□□□□□ -0.71
VMP1-204ENST00000587259 ANKRD26Q9UPS8 1709 aa10.62□□□□□ -0.71
VMP1-204ENST00000587259 ANP32CO43423 234 aa10.62□□□□□ -0.71
VMP1-204ENST00000587259 CENPBP07199 599 aaPredicted RBP10.62□□□□□ -0.71
VMP1-204ENST00000587259 HTRA3P83110 453 aa10.62□□□□□ -0.71
VMP1-204ENST00000587259 MIER1Q8N108 512 aa10.62□□□□□ -0.71
VMP1-204ENST00000587259 NMRK2Q9NPI5 230 aa10.62□□□□□ -0.71
VMP1-204ENST00000587259 SRP68Q9UHB9 627 aaKnown RBP10.62□□□□□ -0.71
VMP1-204ENST00000587259 KDM6AO15550 1401 aaPredicted RBP10.61□□□□□ -0.71
VMP1-204ENST00000587259 PTCD1O75127 700 aaKnown RBP10.61□□□□□ -0.71
VMP1-204ENST00000587259 GYS1P13807 737 aa10.61□□□□□ -0.71
VMP1-204ENST00000587259 DDX10Q13206 875 aaKnown RBP10.61□□□□□ -0.71
VMP1-204ENST00000587259 CDCA8Q53HL2 280 aa10.61□□□□□ -0.71
VMP1-204ENST00000587259 TRAPPC3LQ5T215 181 aa10.61□□□□□ -0.71
VMP1-204ENST00000587259 ARHGAP27Q6ZUM4 889 aa10.61□□□□□ -0.71
VMP1-204ENST00000587259 AEBP1Q8IUX7 1158 aa10.61□□□□□ -0.71
VMP1-204ENST00000587259 RTCBQ9Y3I0 505 aaKnown RBP10.61□□□□□ -0.71
VMP1-204ENST00000587259 C10orf71Q711Q0 1435 aa10.59□□□□□ -0.71
VMP1-204ENST00000587259 FCHSD2O94868 740 aa10.59□□□□□ -0.71
VMP1-204ENST00000587259 KCNA3P22001 575 aa10.59□□□□□ -0.71
VMP1-204ENST00000587259 ZNF530Q6P9A1 599 aaPredicted RBP10.59□□□□□ -0.71
VMP1-204ENST00000587259 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.59□□□□□ -0.719e-10■■□□□ 12.9
VMP1-204ENST00000587259 FARP1Q9Y4F1 1045 aaPredicted RBP10.59□□□□□ -0.71
VMP1-204ENST00000587259 CCER2I3L3R5 266 aa10.58□□□□□ -0.72
VMP1-204ENST00000587259 CHRNA5P30532 468 aa10.58□□□□□ -0.72
VMP1-204ENST00000587259 RFC4P35249 363 aa10.58□□□□□ -0.72
VMP1-204ENST00000587259 CABP4P57796 275 aa10.58□□□□□ -0.72
VMP1-204ENST00000587259 FKBP8Q14318 412 aa10.58□□□□□ -0.72
VMP1-204ENST00000587259 KIF13BQ9NQT8 1826 aa10.58□□□□□ -0.72
VMP1-204ENST00000587259 C4AP0C0L4 1744 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms