RNA–Protein interactions for RNA: ENST00000587220.5

ZNF540-205, Transcript of zinc finger protein 540, humanhuman

TSL 2

Gene ZNF540, Length 576 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-205ENST00000587220 ZEB1P37275 1124 aaPredicted RBP14.44□□□□□ -0.1
ZNF540-205ENST00000587220 CABP4P57796 275 aa14.44□□□□□ -0.1
ZNF540-205ENST00000587220 GPR162Q16538 588 aa14.44□□□□□ -0.1
ZNF540-205ENST00000587220 PELP1Q8IZL8 1130 aaKnown RBP14.44□□□□□ -0.1
ZNF540-205ENST00000587220 ATG3Q9NT62 314 aa14.44□□□□□ -0.1
ZNF540-205ENST00000587220 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.43□□□□□ -0.1
ZNF540-205ENST00000587220 LINC00116Q8NCU8 138 aa14.43□□□□□ -0.1
ZNF540-205ENST00000587220 RBM42Q9BTD8 480 aaKnown RBP14.43□□□□□ -0.1
ZNF540-205ENST00000587220 GOLGB1Q14789 3259 aaKnown RBP14.43□□□□□ -0.1
ZNF540-205ENST00000587220 UBR3Q6ZT12 1888 aa14.42□□□□□ -0.1
ZNF540-205ENST00000587220 GNPATO15228 680 aa14.42□□□□□ -0.1
ZNF540-205ENST00000587220 PER1O15534 1290 aaPredicted RBP14.42□□□□□ -0.1
ZNF540-205ENST00000587220 KDRP35968 1356 aa14.42□□□□□ -0.1
ZNF540-205ENST00000587220 KDM6AO15550 1401 aaPredicted RBP14.41□□□□□ -0.1
ZNF540-205ENST00000587220 SSFA2P28290 1259 aa14.41□□□□□ -0.1
ZNF540-205ENST00000587220 ITPK1Q13572 414 aa14.41□□□□□ -0.1
ZNF540-205ENST00000587220 DIAPH1O60610 1272 aaKnown RBP14.4□□□□□ -0.1
ZNF540-205ENST00000587220 HMOX1P09601 288 aa14.4□□□□□ -0.1
ZNF540-205ENST00000587220 NLGN2Q8NFZ4 835 aa14.4□□□□□ -0.1
ZNF540-205ENST00000587220 SMIM5Q71RC9 77 aa14.39□□□□□ -0.11
ZNF540-205ENST00000587220 AMIGO3Q86WK7 504 aa14.39□□□□□ -0.11
ZNF540-205ENST00000587220 NFATC2IPQ8NCF5 419 aa14.39□□□□□ -0.11
ZNF540-205ENST00000587220 CHD4Q14839 1912 aa14.39□□□□□ -0.11
ZNF540-205ENST00000587220 NPC1L1Q9UHC9 1359 aa14.38□□□□□ -0.11
ZNF540-205ENST00000587220 AKAP4Q5JQC9 854 aa14.38□□□□□ -0.11
ZNF540-205ENST00000587220 RTCBQ9Y3I0 505 aaKnown RBP14.38□□□□□ -0.11
ZNF540-205ENST00000587220 ZNF831Q5JPB2 1677 aa14.38□□□□□ -0.11
ZNF540-205ENST00000587220 SCN11AQ9UI33 1791 aa14.37□□□□□ -0.11
ZNF540-205ENST00000587220 PTCD1O75127 700 aaKnown RBP14.37□□□□□ -0.11
ZNF540-205ENST00000587220 CD2APQ9Y5K6 639 aa14.37□□□□□ -0.11
ZNF540-205ENST00000587220 COL5A3P25940 1745 aaPredicted RBP14.36□□□□□ -0.11
ZNF540-205ENST00000587220 U2SURPO15042 1029 aaKnown RBP14.36□□□□□ -0.11
ZNF540-205ENST00000587220 TRAPPC3LQ5T215 181 aa14.36□□□□□ -0.11
ZNF540-205ENST00000587220 SLC4A9Q96Q91 983 aa14.35□□□□□ -0.11
ZNF540-205ENST00000587220 CNTNAP4Q9C0A0 1308 aa14.35□□□□□ -0.11
ZNF540-205ENST00000587220 GRIN3BO60391 1043 aa14.34□□□□□ -0.11
ZNF540-205ENST00000587220 RFC4P35249 363 aa14.34□□□□□ -0.11
ZNF540-205ENST00000587220 CFAP53Q96M91 514 aa14.34□□□□□ -0.11
ZNF540-205ENST00000587220 VIRMAQ69YN4 1812 aaKnown RBP14.34□□□□□ -0.11
ZNF540-205ENST00000587220 ADRA2BP18089 450 aa14.33□□□□□ -0.12
ZNF540-205ENST00000587220 RC3H1Q5TC82 1133 aaKnown RBP14.33□□□□□ -0.12
ZNF540-205ENST00000587220 SLC52A2Q9HAB3 445 aa14.33□□□□□ -0.12
ZNF540-205ENST00000587220 MMP10P09238 476 aa14.32□□□□□ -0.12
ZNF540-205ENST00000587220 MTHFSDQ2M296 383 aaKnown RBP14.32□□□□□ -0.12
ZNF540-205ENST00000587220 NLGN1Q8N2Q7 840 aa14.32□□□□□ -0.12
ZNF540-205ENST00000587220 ZNF784Q8NCA9 323 aaPredicted RBP14.32□□□□□ -0.12
ZNF540-205ENST00000587220 LGR6Q9HBX8 967 aa14.32□□□□□ -0.12
ZNF540-205ENST00000587220 COL3A1P02461 1466 aaPredicted RBP14.31□□□□□ -0.12
ZNF540-205ENST00000587220 RNMTO43148 476 aaKnown RBP14.31□□□□□ -0.12
ZNF540-205ENST00000587220 RPS6KA4O75676 772 aa14.31□□□□□ -0.12
ZNF540-205ENST00000587220 YBX3P16989 372 aaKnown RBP eCLIP14.31□□□□□ -0.12
ZNF540-205ENST00000587220 CRKLP46109 303 aaKnown RBP14.31□□□□□ -0.12
ZNF540-205ENST00000587220 ARHGEF1Q92888 912 aaKnown RBP14.31□□□□□ -0.12
ZNF540-205ENST00000587220 TJP1Q07157 1748 aa14.3□□□□□ -0.12
ZNF540-205ENST00000587220 MRC1P22897 1456 aa14.3□□□□□ -0.12
ZNF540-205ENST00000587220 GAS2L2Q8NHY3 880 aa14.29□□□□□ -0.12
ZNF540-205ENST00000587220 NUDCQ9Y266 331 aa14.29□□□□□ -0.12
ZNF540-205ENST00000587220 CICQ96RK0 1608 aaPredicted RBP14.29□□□□□ -0.12
ZNF540-205ENST00000587220 C4AP0C0L4 1744 aa14.29□□□□□ -0.12
ZNF540-205ENST00000587220 MYH14Q7Z406 1995 aaKnown RBP14.29□□□□□ -0.12
ZNF540-205ENST00000587220 GNAT3A8MTJ3 354 aa14.28□□□□□ -0.12
ZNF540-205ENST00000587220 TEFQ10587 303 aa14.28□□□□□ -0.12
ZNF540-205ENST00000587220 SLC39A6Q13433 755 aa14.28□□□□□ -0.12
ZNF540-205ENST00000587220 TTC5Q8N0Z6 440 aa14.28□□□□□ -0.12
ZNF540-205ENST00000587220 WWC3Q9ULE0 1092 aa14.28□□□□□ -0.12
ZNF540-205ENST00000587220 PARP3Q9Y6F1 533 aa14.28□□□□□ -0.12
ZNF540-205ENST00000587220 ADAMTS7Q9UKP4 1686 aa14.27□□□□□ -0.12
ZNF540-205ENST00000587220 GYS1P13807 737 aa14.27□□□□□ -0.13
ZNF540-205ENST00000587220 PPP2R1AP30153 589 aa14.27□□□□□ -0.13
ZNF540-205ENST00000587220 DNAJC10Q8IXB1 793 aa14.27□□□□□ -0.13
ZNF540-205ENST00000587220 CCDC87Q9NVE4 849 aa14.27□□□□□ -0.13
ZNF540-205ENST00000587220 U2AF1L5P0DN76 240 aaPredicted RBP14.26□□□□□ -0.13
ZNF540-205ENST00000587220 PRKAR2BP31323 418 aa14.26□□□□□ -0.13
ZNF540-205ENST00000587220 U2AF1Q01081 240 aaKnown RBP eCLIP14.26□□□□□ -0.13
ZNF540-205ENST00000587220 USP42Q9H9J4 1324 aaKnown RBP14.25□□□□□ -0.13
ZNF540-205ENST00000587220 ZPR1O75312 459 aa14.25□□□□□ -0.13
ZNF540-205ENST00000587220 INTS5Q6P9B9 1019 aaKnown RBP14.25□□□□□ -0.13
ZNF540-205ENST00000587220 KCPQ6ZWJ8 1503 aa14.25□□□□□ -0.13
ZNF540-205ENST00000587220 VSIG10Q8N0Z9 540 aa14.24□□□□□ -0.13
ZNF540-205ENST00000587220 SRP68Q9UHB9 627 aaKnown RBP14.24□□□□□ -0.13
ZNF540-205ENST00000587220 KIF13BQ9NQT8 1826 aa14.24□□□□□ -0.13
ZNF540-205ENST00000587220 STARD3NLO95772 234 aa14.23□□□□□ -0.13
ZNF540-205ENST00000587220 CYP19A1P11511 503 aaPredicted RBP14.23□□□□□ -0.13
ZNF540-205ENST00000587220 TGFB2P61812 414 aa14.23□□□□□ -0.13
ZNF540-205ENST00000587220 RSPH6AQ9H0K4 717 aa14.23□□□□□ -0.13
ZNF540-205ENST00000587220 UBR2Q8IWV8 1755 aa14.23□□□□□ -0.13
ZNF540-205ENST00000587220 C10orf71Q711Q0 1435 aa14.23□□□□□ -0.13
ZNF540-205ENST00000587220 N4BP2Q86UW6 1770 aaPredicted RBP14.22□□□□□ -0.13
ZNF540-205ENST00000587220 FKBP8Q14318 412 aa14.22□□□□□ -0.13
ZNF540-205ENST00000587220 IL17REQ8NFR9 667 aa14.22□□□□□ -0.13
ZNF540-205ENST00000587220 RTF1Q92541 710 aaKnown RBP14.22□□□□□ -0.13
ZNF540-205ENST00000587220 PHACTR3Q96KR7 559 aa14.22□□□□□ -0.13
ZNF540-205ENST00000587220 PXDNLA1KZ92 1463 aa14.22□□□□□ -0.13
ZNF540-205ENST00000587220 COL15A1P39059 1388 aa14.22□□□□□ -0.13
ZNF540-205ENST00000587220 SOS1Q07889 1333 aaPredicted RBP14.21□□□□□ -0.13
ZNF540-205ENST00000587220 A0A0G2JLW4 131 aa14.21□□□□□ -0.13
ZNF540-205ENST00000587220 GIGYF1O75420 1035 aaPredicted RBP14.21□□□□□ -0.13
ZNF540-205ENST00000587220 NEFMP07197 916 aa14.21□□□□□ -0.13
ZNF540-205ENST00000587220 CANXP27824 592 aaKnown RBP14.21□□□□□ -0.13
ZNF540-205ENST00000587220 USPL1Q5W0Q7 1092 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms