RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 COL24A1Q17RW2 1714 aa37.86■■■■□ 3.65
LIG3-208ENST00000586407 AMIGO3Q86WK7 504 aa37.85■■■■□ 3.65
LIG3-208ENST00000586407 MTHFSDQ2M296 383 aaKnown RBP37.84■■■■□ 3.65
LIG3-208ENST00000586407 ATP6V1AP38606 617 aa37.83■■■■□ 3.65
LIG3-208ENST00000586407 SLC16A10Q8TF71 515 aa37.83■■■■□ 3.65
LIG3-208ENST00000586407 AKAP4Q5JQC9 854 aa37.82■■■■□ 3.64
LIG3-208ENST00000586407 NFATC2IPQ8NCF5 419 aa37.82■■■■□ 3.64
LIG3-208ENST00000586407 AK7Q96M32 723 aa37.82■■■■□ 3.64
LIG3-208ENST00000586407 CFAP53Q96M91 514 aa37.81■■■■□ 3.64
LIG3-208ENST00000586407 SLC4A9Q96Q91 983 aa37.81■■■■□ 3.64
LIG3-208ENST00000586407 RBM42Q9BTD8 480 aaKnown RBP37.81■■■■□ 3.64
LIG3-208ENST00000586407 LGR6Q9HBX8 967 aa37.81■■■■□ 3.64
LIG3-208ENST00000586407 FHDC1Q9C0D6 1143 aaPredicted RBP37.8■■■■□ 3.64
LIG3-208ENST00000586407 MSL1Q68DK7 614 aa37.79■■■■□ 3.64
LIG3-208ENST00000586407 ARXQ96QS3 562 aa37.79■■■■□ 3.64
LIG3-208ENST00000586407 PHF14O94880 888 aa37.78■■■■□ 3.64
LIG3-208ENST00000586407 COL5A3P25940 1745 aaPredicted RBP37.76■■■■□ 3.64
LIG3-208ENST00000586407 ADAMTS7Q9UKP4 1686 aa37.76■■■■□ 3.63
LIG3-208ENST00000586407 RNMTO43148 476 aaKnown RBP37.75■■■■□ 3.63
LIG3-208ENST00000586407 ZNF831Q5JPB2 1677 aa37.75■■■■□ 3.63
LIG3-208ENST00000586407 MRC1P22897 1456 aa37.73■■■■□ 3.63
LIG3-208ENST00000586407 PTCD1O75127 700 aaKnown RBP37.73■■■■□ 3.63
LIG3-208ENST00000586407 SYT17Q9BSW7 474 aa37.73■■■■□ 3.63
LIG3-208ENST00000586407 GNPATO15228 680 aa37.72■■■■□ 3.63
LIG3-208ENST00000586407 POLD1P28340 1107 aa37.72■■■■□ 3.63
LIG3-208ENST00000586407 KLHL34Q8N239 644 aa37.72■■■■□ 3.63
LIG3-208ENST00000586407 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP37.71■■■■□ 3.63
LIG3-208ENST00000586407 SLC52A2Q9HAB3 445 aa37.71■■■■□ 3.63
LIG3-208ENST00000586407 TJP1Q07157 1748 aa37.7■■■■□ 3.63
LIG3-208ENST00000586407 HMGB2P26583 209 aaKnown RBP37.7■■■■□ 3.63
LIG3-208ENST00000586407 PRKAR2BP31323 418 aa37.7■■■■□ 3.63
LIG3-208ENST00000586407 DDX10Q13206 875 aaKnown RBP37.69■■■■□ 3.62
LIG3-208ENST00000586407 FLAD1Q8NFF5 587 aa37.69■■■■□ 3.62
LIG3-208ENST00000586407 PHACTR3Q96KR7 559 aa37.69■■■■□ 3.62
LIG3-208ENST00000586407 RSPH6AQ9H0K4 717 aa37.69■■■■□ 3.62
LIG3-208ENST00000586407 MYH14Q7Z406 1995 aaKnown RBP37.69■■■■□ 3.62
LIG3-208ENST00000586407 U2AF1L5P0DN76 240 aaPredicted RBP37.68■■■■□ 3.62
LIG3-208ENST00000586407 U2AF1Q01081 240 aaKnown RBP eCLIP37.68■■■■□ 3.62
LIG3-208ENST00000586407 NUDCQ9Y266 331 aa37.67■■■■□ 3.62
LIG3-208ENST00000586407 SLC39A6Q13433 755 aa37.65■■■■□ 3.62
LIG3-208ENST00000586407 MAP3K5Q99683 1374 aa37.65■■■■□ 3.62
LIG3-208ENST00000586407 SSFA2P28290 1259 aa37.64■■■■□ 3.62
LIG3-208ENST00000586407 GAS2L2Q8NHY3 880 aa37.63■■■■□ 3.61
LIG3-208ENST00000586407 CICQ96RK0 1608 aaPredicted RBP37.6■■■■□ 3.61
LIG3-208ENST00000586407 SIPA1L3O60292 1781 aaPredicted RBP37.6■■■■□ 3.61
LIG3-208ENST00000586407 GNAT3A8MTJ3 354 aa37.59■■■■□ 3.61
LIG3-208ENST00000586407 IL17REQ8NFR9 667 aa37.59■■■■□ 3.61
LIG3-208ENST00000586407 KCPQ6ZWJ8 1503 aa37.59■■■■□ 3.61
LIG3-208ENST00000586407 CNTNAP4Q9C0A0 1308 aa37.59■■■■□ 3.61
LIG3-208ENST00000586407 RTCBQ9Y3I0 505 aaKnown RBP37.57■■■■□ 3.6
LIG3-208ENST00000586407 UBR2Q8IWV8 1755 aa37.57■■■■□ 3.6
LIG3-208ENST00000586407 C4AP0C0L4 1744 aa37.56■■■■□ 3.6
LIG3-208ENST00000586407 RC3H1Q5TC82 1133 aaKnown RBP37.55■■■■□ 3.6
LIG3-208ENST00000586407 DNAJC10Q8IXB1 793 aa37.55■■■■□ 3.6
LIG3-208ENST00000586407 NLGN2Q8NFZ4 835 aa37.55■■■■□ 3.6
LIG3-208ENST00000586407 DCAF8L1A6NGE4 600 aa37.54■■■■□ 3.6
LIG3-208ENST00000586407 CRKLP46109 303 aaKnown RBP37.54■■■■□ 3.6
LIG3-208ENST00000586407 FCHSD2O94868 740 aa37.52■■■■□ 3.6
LIG3-208ENST00000586407 RPS6KA4O75676 772 aa37.51■■■■□ 3.6
LIG3-208ENST00000586407 TEFQ10587 303 aa37.51■■■■□ 3.6
LIG3-208ENST00000586407 TRAPPC3LQ5T215 181 aa37.51■■■■□ 3.6
LIG3-208ENST00000586407 ARHGEF1Q92888 912 aaKnown RBP37.5■■■■□ 3.59
LIG3-208ENST00000586407 DLG5Q8TDM6 1919 aa37.47■■■■□ 3.59
LIG3-208ENST00000586407 CEMIPQ8WUJ3 1361 aa37.46■■■■□ 3.59
LIG3-208ENST00000586407 RALBP1Q15311 655 aa37.46■■■■□ 3.59
LIG3-208ENST00000586407 INTS5Q6P9B9 1019 aaKnown RBP37.46■■■■□ 3.59
LIG3-208ENST00000586407 MCM10Q7L590 875 aa37.44■■■■□ 3.58
LIG3-208ENST00000586407 ADRA2BP18089 450 aa37.43■■■■□ 3.58
LIG3-208ENST00000586407 DCTN1Q14203 1278 aa37.43■■■■□ 3.58
LIG3-208ENST00000586407 PELP1Q8IZL8 1130 aaKnown RBP37.43■■■■□ 3.58
LIG3-208ENST00000586407 TTC5Q8N0Z6 440 aa37.43■■■■□ 3.58
LIG3-208ENST00000586407 CYP19A1P11511 503 aaPredicted RBP37.42■■■■□ 3.58
LIG3-208ENST00000586407 RFC4P35249 363 aa37.42■■■■□ 3.58
LIG3-208ENST00000586407 CCDC87Q9NVE4 849 aa37.42■■■■□ 3.58
LIG3-208ENST00000586407 SRP68Q9UHB9 627 aaKnown RBP37.42■■■■□ 3.58
LIG3-208ENST00000586407 ZNF496Q96IT1 587 aaPredicted RBP37.41■■■■□ 3.58
LIG3-208ENST00000586407 KCNQ3O43525 872 aa37.4■■■■□ 3.58
LIG3-208ENST00000586407 MMP10P09238 476 aa37.4■■■■□ 3.58
LIG3-208ENST00000586407 GYS1P13807 737 aa37.39■■■■□ 3.58
LIG3-208ENST00000586407 ZNF790Q6PG37 636 aa37.39■■■■□ 3.58
LIG3-208ENST00000586407 GPR162Q16538 588 aa37.38■■■■□ 3.57
LIG3-208ENST00000586407 RTF1Q92541 710 aaKnown RBP37.38■■■■□ 3.57
LIG3-208ENST00000586407 YY1P25490 414 aa37.37■■■■□ 3.57
LIG3-208ENST00000586407 ZBTB1Q9Y2K1 713 aa37.37■■■■□ 3.57
LIG3-208ENST00000586407 ZEB1P37275 1124 aaPredicted RBP37.36■■■■□ 3.57
LIG3-208ENST00000586407 PLEKHF1Q96S99 279 aa37.36■■■■□ 3.57
LIG3-208ENST00000586407 MYBBP1AQ9BQG0 1328 aaKnown RBP37.36■■■■□ 3.57
LIG3-208ENST00000586407 HEG1Q9ULI3 1381 aa37.35■■■■□ 3.57
LIG3-208ENST00000586407 BTBD11A6QL63 1104 aa37.35■■■■□ 3.57
LIG3-208ENST00000586407 VSIG10Q8N0Z9 540 aa37.35■■■■□ 3.57
LIG3-208ENST00000586407 CD2APQ9Y5K6 639 aa37.35■■■■□ 3.57
LIG3-208ENST00000586407 SOS1Q07889 1333 aaPredicted RBP37.35■■■■□ 3.57
LIG3-208ENST00000586407 NLGN1Q8N2Q7 840 aa37.33■■■■□ 3.57
LIG3-208ENST00000586407 USP42Q9H9J4 1324 aaKnown RBP37.33■■■■□ 3.57
LIG3-208ENST00000586407 CHD4Q14839 1912 aa37.32■■■■□ 3.57
LIG3-208ENST00000586407 NEFMP07197 916 aa37.31■■■■□ 3.56
LIG3-208ENST00000586407 WWC3Q9ULE0 1092 aa37.31■■■■□ 3.56
LIG3-208ENST00000586407 YBX3P16989 372 aaKnown RBP eCLIP37.3■■■■□ 3.561e-6■■□□□ 11.7
LIG3-208ENST00000586407 CANXP27824 592 aaKnown RBP37.3■■■■□ 3.56
LIG3-208ENST00000586407 FKBP8Q14318 412 aa37.29■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms