RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 ATP10DQ9P241 1426 aa16.03■□□□□ 0.16
LIG3-207ENST00000586119 SSFA2P28290 1259 aa16.03■□□□□ 0.16
LIG3-207ENST00000586119 ZNF526Q8TF50 670 aaPredicted RBP16.03■□□□□ 0.16
LIG3-207ENST00000586119 AEBP1Q8IUX7 1158 aa16.02■□□□□ 0.16
LIG3-207ENST00000586119 RBM42Q9BTD8 480 aaKnown RBP16.02■□□□□ 0.16
LIG3-207ENST00000586119 MMP10P09238 476 aa16■□□□□ 0.15
LIG3-207ENST00000586119 HMGB2P26583 209 aaKnown RBP16■□□□□ 0.15
LIG3-207ENST00000586119 MYH14Q7Z406 1995 aaKnown RBP16■□□□□ 0.15
LIG3-207ENST00000586119 EIF4G2P78344 907 aaKnown RBP eCLIP15.99■□□□□ 0.15
LIG3-207ENST00000586119 ARHGEF1Q92888 912 aaKnown RBP15.99■□□□□ 0.15
LIG3-207ENST00000586119 N4BP2Q86UW6 1770 aaPredicted RBP15.98■□□□□ 0.15
LIG3-207ENST00000586119 ERVV-2B6SEH9 535 aa15.98■□□□□ 0.15
LIG3-207ENST00000586119 KDM6AO15550 1401 aaPredicted RBP15.98■□□□□ 0.15
LIG3-207ENST00000586119 PLEKHO1Q53GL0 409 aaPredicted RBP15.98■□□□□ 0.15
LIG3-207ENST00000586119 TRAPPC3LQ5T215 181 aa15.98■□□□□ 0.15
LIG3-207ENST00000586119 ZNF530Q6P9A1 599 aaPredicted RBP15.98■□□□□ 0.15
LIG3-207ENST00000586119 KDRP35968 1356 aa15.98■□□□□ 0.15
LIG3-207ENST00000586119 A0A0G2JLW4 131 aa15.97■□□□□ 0.15
LIG3-207ENST00000586119 GPBP1L1Q9HC44 474 aaPredicted RBP15.97■□□□□ 0.15
LIG3-207ENST00000586119 RTCBQ9Y3I0 505 aaKnown RBP15.97■□□□□ 0.15
LIG3-207ENST00000586119 ADCY9O60503 1353 aa15.97■□□□□ 0.15
LIG3-207ENST00000586119 CABP4P57796 275 aa15.96■□□□□ 0.15
LIG3-207ENST00000586119 MORC1Q86VD1 984 aa15.96■□□□□ 0.15
LIG3-207ENST00000586119 DCAF5Q96JK2 942 aa15.96■□□□□ 0.15
LIG3-207ENST00000586119 KIAA1551Q9HCM1 1747 aa15.96■□□□□ 0.15
LIG3-207ENST00000586119 PTCD1O75127 700 aaKnown RBP15.95■□□□□ 0.14
LIG3-207ENST00000586119 MTHFSP49914 203 aa15.95■□□□□ 0.14
LIG3-207ENST00000586119 SULT6B1Q6IMI4 303 aa15.95■□□□□ 0.14
LIG3-207ENST00000586119 NFATC2IPQ8NCF5 419 aa15.95■□□□□ 0.14
LIG3-207ENST00000586119 COL5A3P25940 1745 aaPredicted RBP15.94■□□□□ 0.14
LIG3-207ENST00000586119 RPS6KA4O75676 772 aa15.94■□□□□ 0.14
LIG3-207ENST00000586119 GYS1P13807 737 aa15.94■□□□□ 0.14
LIG3-207ENST00000586119 RC3H1Q5TC82 1133 aaKnown RBP15.94■□□□□ 0.14
LIG3-207ENST00000586119 KIF13BQ9NQT8 1826 aa15.94■□□□□ 0.14
LIG3-207ENST00000586119 CICQ96RK0 1608 aaPredicted RBP15.94■□□□□ 0.14
LIG3-207ENST00000586119 CLSPNQ9HAW4 1339 aa15.94■□□□□ 0.14
LIG3-207ENST00000586119 PXDNLA1KZ92 1463 aa15.93■□□□□ 0.14
LIG3-207ENST00000586119 HSP90AB1P08238 724 aaKnown RBP15.93■□□□□ 0.14
LIG3-207ENST00000586119 DPEP1P16444 411 aa15.93■□□□□ 0.14
LIG3-207ENST00000586119 IL13P35225 146 aa15.93■□□□□ 0.14
LIG3-207ENST00000586119 NLGN1Q8N2Q7 840 aa15.93■□□□□ 0.14
LIG3-207ENST00000586119 SRP68Q9UHB9 627 aaKnown RBP15.93■□□□□ 0.14
LIG3-207ENST00000586119 RFC4P35249 363 aa15.92■□□□□ 0.14
LIG3-207ENST00000586119 AMOTQ4VCS5 1084 aa15.92■□□□□ 0.14
LIG3-207ENST00000586119 BCS1LQ9Y276 419 aa15.92■□□□□ 0.14
LIG3-207ENST00000586119 CNTNAP4Q9C0A0 1308 aa15.92■□□□□ 0.14
LIG3-207ENST00000586119 KIF3CO14782 793 aa15.91■□□□□ 0.14
LIG3-207ENST00000586119 LGR6Q9HBX8 967 aa15.91■□□□□ 0.14
LIG3-207ENST00000586119 ZNF831Q5JPB2 1677 aa15.91■□□□□ 0.14
LIG3-207ENST00000586119 CEP350Q5VT06 3117 aa15.91■□□□□ 0.14
LIG3-207ENST00000586119 KCNA3P22001 575 aa15.9■□□□□ 0.14
LIG3-207ENST00000586119 CRKLP46109 303 aaKnown RBP15.9■□□□□ 0.14
LIG3-207ENST00000586119 TGFB2P61812 414 aa15.9■□□□□ 0.14
LIG3-207ENST00000586119 C1orf141Q5JVX7 400 aa15.9■□□□□ 0.14
LIG3-207ENST00000586119 ARHGAP27Q6ZUM4 889 aa15.9■□□□□ 0.14
LIG3-207ENST00000586119 C4AP0C0L4 1744 aa15.9■□□□□ 0.14
LIG3-207ENST00000586119 FKBP8Q14318 412 aa15.89■□□□□ 0.13
LIG3-207ENST00000586119 AMER1Q5JTC6 1135 aaPredicted RBP15.89■□□□□ 0.13
LIG3-207ENST00000586119 INTS5Q6P9B9 1019 aaKnown RBP15.89■□□□□ 0.13
LIG3-207ENST00000586119 KNSTRNQ9Y448 316 aa15.89■□□□□ 0.13
LIG3-207ENST00000586119 SCN11AQ9UI33 1791 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 C10orf71Q711Q0 1435 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 HMOX1P09601 288 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 ADRA2BP18089 450 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 DDR1Q08345 913 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 SLC39A6Q13433 755 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 DNAJC10Q8IXB1 793 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 CCER1Q8TC90 406 aaPredicted RBP15.88■□□□□ 0.13
LIG3-207ENST00000586119 CCDC87Q9NVE4 849 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 PARP3Q9Y6F1 533 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 TJP1Q07157 1748 aa15.88■□□□□ 0.13
LIG3-207ENST00000586119 PLEKHG2Q9H7P9 1386 aa15.87■□□□□ 0.13
LIG3-207ENST00000586119 BRCA1P38398 1863 aaKnown RBP15.87■□□□□ 0.13
LIG3-207ENST00000586119 FCHSD2O94868 740 aa15.87■□□□□ 0.13
LIG3-207ENST00000586119 HSPA6P17066 643 aa15.87■□□□□ 0.13
LIG3-207ENST00000586119 VIRMAQ69YN4 1812 aaKnown RBP15.87■□□□□ 0.13
LIG3-207ENST00000586119 CHRNA5P30532 468 aa15.85■□□□□ 0.13
LIG3-207ENST00000586119 USP42Q9H9J4 1324 aaKnown RBP15.85■□□□□ 0.13
LIG3-207ENST00000586119 ADAMTS7Q9UKP4 1686 aa15.84■□□□□ 0.13
LIG3-207ENST00000586119 RNMTO43148 476 aaKnown RBP15.84■□□□□ 0.13
LIG3-207ENST00000586119 CNGB1Q14028 1251 aaPredicted RBP15.84■□□□□ 0.13
LIG3-207ENST00000586119 AKAP4Q5JQC9 854 aa15.84■□□□□ 0.13
LIG3-207ENST00000586119 SLC52A2Q9HAB3 445 aa15.84■□□□□ 0.13
LIG3-207ENST00000586119 NMRK2Q9NPI5 230 aa15.84■□□□□ 0.13
LIG3-207ENST00000586119 KIF7Q2M1P5 1343 aa15.84■□□□□ 0.13
LIG3-207ENST00000586119 TM4SF1P30408 202 aa15.83■□□□□ 0.12
LIG3-207ENST00000586119 MTHFSDQ2M296 383 aaKnown RBP15.83■□□□□ 0.12
LIG3-207ENST00000586119 CC2D1BQ5T0F9 858 aaKnown RBP15.83■□□□□ 0.12
LIG3-207ENST00000586119 USPL1Q5W0Q7 1092 aa15.83■□□□□ 0.12
LIG3-207ENST00000586119 POLRMTO00411 1230 aaKnown RBP15.82■□□□□ 0.12
LIG3-207ENST00000586119 PER1O15534 1290 aaPredicted RBP15.82■□□□□ 0.12
LIG3-207ENST00000586119 C9orf131Q5VYM1 1079 aa15.82■□□□□ 0.12
LIG3-207ENST00000586119 CYP19A1P11511 503 aaPredicted RBP15.81■□□□□ 0.12
LIG3-207ENST00000586119 PIM2Q9P1W9 311 aa15.81■□□□□ 0.12
LIG3-207ENST00000586119 ARFGEF1Q9Y6D6 1849 aa15.81■□□□□ 0.12
LIG3-207ENST00000586119 SOS1Q07889 1333 aaPredicted RBP15.8■□□□□ 0.12
LIG3-207ENST00000586119 BCL2L12Q9HB09 334 aa15.8■□□□□ 0.12
LIG3-207ENST00000586119 ZBTB1Q9Y2K1 713 aa15.8■□□□□ 0.12
LIG3-207ENST00000586119 SBF1O95248 1867 aa15.8■□□□□ 0.12
LIG3-207ENST00000586119 AFDNP55196 1824 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms