RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 ARHGEF25Q86VW2 580 aa12.76□□□□□ -0.37
RFFL-212ENST00000584655 HSP90AB1P08238 724 aaKnown RBP12.75□□□□□ -0.37
RFFL-212ENST00000584655 COPS6Q7L5N1 327 aa12.75□□□□□ -0.37
RFFL-212ENST00000584655 CCDC8Q9H0W5 538 aaPredicted RBP12.75□□□□□ -0.37
RFFL-212ENST00000584655 AGLP35573 1532 aa12.75□□□□□ -0.37
RFFL-212ENST00000584655 XAGE3Q8WTP9 111 aa12.74□□□□□ -0.37
RFFL-212ENST00000584655 ANO2Q9NQ90 1003 aa12.74□□□□□ -0.37
RFFL-212ENST00000584655 FAM135BQ49AJ0 1406 aa12.74□□□□□ -0.37
RFFL-212ENST00000584655 NCLP19338 710 aaKnown RBP12.74□□□□□ -0.37
RFFL-212ENST00000584655 PPP1R42Q7Z4L9 355 aa12.74□□□□□ -0.37
RFFL-212ENST00000584655 SRCIN1Q9C0H9 1055 aa12.74□□□□□ -0.37
RFFL-212ENST00000584655 NAP1L2Q9ULW6 460 aaPredicted RBP12.74□□□□□ -0.37
RFFL-212ENST00000584655 CHMP4CQ96CF2 233 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 MAP2P11137 1827 aaKnown RBP12.73□□□□□ -0.37
RFFL-212ENST00000584655 KDM4AO75164 1064 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 GNAI2P04899 355 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 BICDL1Q6ZP65 573 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 CHAMP1Q96JM3 812 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 RNMTO43148 476 aaKnown RBP12.73□□□□□ -0.37
RFFL-212ENST00000584655 ALDH1L2Q3SY69 923 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 PNPLA6Q8IY17 1366 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 LAMC1P11047 1609 aa12.73□□□□□ -0.37
RFFL-212ENST00000584655 STK11IPQ8N1F8 1099 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 ZNF853P0CG23 659 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 UBE3BQ7Z3V4 1068 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 NEUROD6Q96NK8 337 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 IGSF1Q8N6C5 1336 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 C8orf37Q96NL8 207 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 UPF3BQ9BZI7 483 aaKnown RBP12.72□□□□□ -0.37
RFFL-212ENST00000584655 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.72□□□□□ -0.37
RFFL-212ENST00000584655 KCNJ4P48050 445 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 CEP85Q6P2H3 762 aa12.72□□□□□ -0.37
RFFL-212ENST00000584655 NPHP3Q7Z494 1330 aa12.71□□□□□ -0.37
RFFL-212ENST00000584655 DLC1Q96QB1 1528 aa12.71□□□□□ -0.37
RFFL-212ENST00000584655 EDC3Q96F86 508 aaKnown RBP12.71□□□□□ -0.37
RFFL-212ENST00000584655 MAP3K5Q99683 1374 aa12.71□□□□□ -0.38
RFFL-212ENST00000584655 CEP170BQ9Y4F5 1589 aaPredicted RBP12.71□□□□□ -0.38
RFFL-212ENST00000584655 NPHP1O15259 732 aa12.71□□□□□ -0.38
RFFL-212ENST00000584655 CYP27B1O15528 508 aa12.7□□□□□ -0.38
RFFL-212ENST00000584655 SIRT1Q96EB6 747 aa12.7□□□□□ -0.38
RFFL-212ENST00000584655 WWC3Q9ULE0 1092 aa12.7□□□□□ -0.38
RFFL-212ENST00000584655 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.7□□□□□ -0.38
RFFL-212ENST00000584655 TBC1D9Q6ZT07 1266 aa12.7□□□□□ -0.38
RFFL-212ENST00000584655 DNAAF4Q8WXU2 420 aa12.7□□□□□ -0.38
RFFL-212ENST00000584655 DDRGK1Q96HY6 314 aa12.7□□□□□ -0.38
RFFL-212ENST00000584655 UBAP1LF5GYI3 381 aa12.7□□□□□ -0.38
RFFL-212ENST00000584655 EIF4A1P60842 406 aaKnown RBP12.7□□□□□ -0.38
RFFL-212ENST00000584655 SYNE4Q8N205 404 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 TBC1D2BQ9UPU7 963 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 IL16Q14005 1332 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 IFT172Q9UG01 1749 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 FOSBP53539 338 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 IL27Q8NEV9 243 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 HMMRO75330 724 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 TCEANC2Q96MN5 208 aa12.69□□□□□ -0.38
RFFL-212ENST00000584655 BECN1Q14457 450 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 CWC27Q6UX04 472 aaKnown RBP12.68□□□□□ -0.38
RFFL-212ENST00000584655 ASAP1Q9ULH1 1129 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 SPG7Q9UQ90 795 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 ERBB3P21860 1342 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 CHGBP05060 677 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 NFKBIBQ15653 356 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 DNAJC2Q99543 621 aaKnown RBP12.68□□□□□ -0.38
RFFL-212ENST00000584655 BOLA2Q9H3K6 86 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 EP400Q96L91 3159 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 CPA1P15085 419 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 NUCB1Q02818 461 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 AKAP4Q5JQC9 854 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 ZNF790Q6PG37 636 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 HSCBQ8IWL3 235 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 USP44Q9H0E7 712 aa12.68□□□□□ -0.38
RFFL-212ENST00000584655 ANO8Q9HCE9 1232 aaPredicted RBP12.68□□□□□ -0.38
RFFL-212ENST00000584655 HSP90AB3PQ58FF7 597 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 TTLL7Q6ZT98 887 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 ADGRL3Q9HAR2 1447 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 SLFNL1Q499Z3 407 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 UNC5CLQ8IV45 518 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 ZNF594Q96JF6 807 aaPredicted RBP12.67□□□□□ -0.38
RFFL-212ENST00000584655 TBC1D2Q9BYX2 928 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 SNRKQ9NRH2 765 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 SDSP20132 328 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 ZCRB1Q8TBF4 217 aaKnown RBP12.67□□□□□ -0.38
RFFL-212ENST00000584655 AATKQ6ZMQ8 1374 aa12.67□□□□□ -0.38
RFFL-212ENST00000584655 GSPT1P15170 499 aaKnown RBP12.66□□□□□ -0.38
RFFL-212ENST00000584655 IFNL2Q8IZJ0 200 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 RGPD8O14715 1765 aaPredicted RBP12.66□□□□□ -0.38
RFFL-212ENST00000584655 NGLY1Q96IV0 654 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 OVOS2A0A0J9YW53 1432 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 OVOS2Q6IE36 1432 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 A0A087WZG4 1122 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 NEXNQ0ZGT2 675 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 COL3A1P02461 1466 aaPredicted RBP12.66□□□□□ -0.38
RFFL-212ENST00000584655 DIP2AQ14689 1571 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 KIAA1210Q9ULL0 1709 aa12.66□□□□□ -0.38
RFFL-212ENST00000584655 CDC42BPGQ6DT37 1551 aa12.65□□□□□ -0.38
RFFL-212ENST00000584655 CD2BP2O95400 341 aaKnown RBP12.65□□□□□ -0.38
RFFL-212ENST00000584655 TAF7LQ5H9L4 462 aa12.65□□□□□ -0.38
RFFL-212ENST00000584655 AACSQ86V21 672 aa12.65□□□□□ -0.38
RFFL-212ENST00000584655 PLEKHM2Q8IWE5 1019 aa12.65□□□□□ -0.38
RFFL-212ENST00000584655 LRRCC1Q9C099 1032 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms