RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	LMOD1	P29536	600 aa	Predicted RBP	7.94	□□□□□ -1.14
SS18-223	ENST00000583595	SOX11	P35716	441 aa		7.94	□□□□□ -1.14
SS18-223	ENST00000583595	USP4	Q13107	963 aa		7.94	□□□□□ -1.14
SS18-223	ENST00000583595	SLC27A3	Q5K4L6	730 aa		7.94	□□□□□ -1.14
SS18-223	ENST00000583595	GPR161	Q8N6U8	529 aa	Known RBP	7.94	□□□□□ -1.14
SS18-223	ENST00000583595	RAB6B	Q9NRW1	208 aa		7.94	□□□□□ -1.14
SS18-223	ENST00000583595	GNRH1	P01148	92 aa		7.93	□□□□□ -1.14
SS18-223	ENST00000583595	OXLD1	Q5BKU9	147 aa		7.93	□□□□□ -1.14
SS18-223	ENST00000583595	NANOS1	Q8WY41	292 aa	Known RBP	7.93	□□□□□ -1.14
SS18-223	ENST00000583595	ALG2	Q9H553	416 aa		7.93	□□□□□ -1.14
SS18-223	ENST00000583595	VRTN	Q9H8Y1	702 aa		7.93	□□□□□ -1.14
SS18-223	ENST00000583595	TFIP11	Q9UBB9	837 aa	Known RBP	7.93	□□□□□ -1.14
SS18-223	ENST00000583595	STK17A	Q9UEE5	414 aa		7.93	□□□□□ -1.14
SS18-223	ENST00000583595	CHIC2	Q9UKJ5	165 aa		7.93	□□□□□ -1.14
SS18-223	ENST00000583595	POU4F2	Q12837	409 aa		7.92	□□□□□ -1.14
SS18-223	ENST00000583595	CCDC27	Q2M243	656 aa		7.92	□□□□□ -1.14
SS18-223	ENST00000583595	VWA5B2	Q8N398	1253 aa		7.92	□□□□□ -1.14
SS18-223	ENST00000583595	ZSCAN1	Q8NBB4	408 aa		7.92	□□□□□ -1.14
SS18-223	ENST00000583595	GRIP2	Q9C0E4	1043 aa		7.92	□□□□□ -1.14
SS18-223	ENST00000583595	CDC14C	A4D256	554 aa		7.91	□□□□□ -1.14
SS18-223	ENST00000583595	IL2RA	P01589	272 aa		7.91	□□□□□ -1.14
SS18-223	ENST00000583595	LOR	P23490	312 aa	Predicted RBP	7.91	□□□□□ -1.14
SS18-223	ENST00000583595	PLPP7	Q8NBV4	271 aa		7.91	□□□□□ -1.14
SS18-223	ENST00000583595	CNKSR1	Q969H4	720 aa		7.91	□□□□□ -1.14
SS18-223	ENST00000583595	ESYT1	Q9BSJ8	1104 aa		7.91	□□□□□ -1.14
SS18-223	ENST00000583595	CENPC	Q03188	943 aa		7.9	□□□□□ -1.14
SS18-223	ENST00000583595	SV2A	Q7L0J3	742 aa		7.9	□□□□□ -1.14
SS18-223	ENST00000583595	SIRT1	Q96EB6	747 aa		7.9	□□□□□ -1.14
SS18-223	ENST00000583595	TMEM88B	A6NKF7	163 aa		7.89	□□□□□ -1.15
SS18-223	ENST00000583595	MAP7D1	Q3KQU3	841 aa		7.89	□□□□□ -1.15
SS18-223	ENST00000583595	NBPF10	Q6P3W6	841 aa	Known RBP	7.89	□□□□□ -1.15
SS18-223	ENST00000583595	NBPF15	Q8N660	670 aa		7.89	□□□□□ -1.15
SS18-223	ENST00000583595	XAGE2	Q96GT9	111 aa		7.89	□□□□□ -1.15
SS18-223	ENST00000583595	CNTNAP3B	Q96NU0	1288 aa		7.89	□□□□□ -1.15
SS18-223	ENST00000583595	CNTNAP3	Q9BZ76	1288 aa		7.89	□□□□□ -1.15
SS18-223	ENST00000583595	CUEDC1	Q9NWM3	386 aa	Predicted RBP	7.89	□□□□□ -1.15
SS18-223	ENST00000583595	LOC100996750	A0A140TA64	210 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	PIK3CD	O00329	1044 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	STAU1	O95793	577 aa	Known RBP	7.88	□□□□□ -1.15
SS18-223	ENST00000583595	KRT76	Q01546	638 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	ESCO1	Q5FWF5	840 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	SND1	Q7KZF4	910 aa	Known RBP eCLIP	7.88	□□□□□ -1.15
SS18-223	ENST00000583595	UCN2	Q96RP3	112 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	COL25A1	Q9BXS0	654 aa	Predicted RBP	7.88	□□□□□ -1.15
SS18-223	ENST00000583595	KRTAP4-6	Q9BYQ5	205 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	AMOTL2	Q9Y2J4	779 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	HRH3	Q9Y5N1	445 aa		7.88	□□□□□ -1.15
SS18-223	ENST00000583595	SPATA31C2	B4DYI2	1134 aa		7.87	□□□□□ -1.15
SS18-223	ENST00000583595	TAS1R3	Q7RTX0	852 aa		7.87	□□□□□ -1.15
SS18-223	ENST00000583595	DYRK1B	Q9Y463	629 aa		7.87	□□□□□ -1.15
SS18-223	ENST00000583595	FAM181B	A6NEQ2	426 aa		7.86	□□□□□ -1.15
SS18-223	ENST00000583595	WDR44	Q5JSH3	913 aa		7.86	□□□□□ -1.15
SS18-223	ENST00000583595	RNFT1	Q5M7Z0	435 aa		7.86	□□□□□ -1.15
SS18-223	ENST00000583595	RIPOR1	Q6ZS17	1223 aa		7.86	□□□□□ -1.15
SS18-223	ENST00000583595	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	7.86	□□□□□ -1.15
SS18-223	ENST00000583595	GAS2L1	Q99501	681 aa	Predicted RBP	7.86	□□□□□ -1.15
SS18-223	ENST00000583595	FHDC1	Q9C0D6	1143 aa	Predicted RBP	7.86	□□□□□ -1.15
SS18-223	ENST00000583595	ETNK1	Q9HBU6	452 aa		7.86	□□□□□ -1.15
SS18-223	ENST00000583595	TIMMDC1	Q9NPL8	285 aa		7.86	□□□□□ -1.15
SS18-223	ENST00000583595	WASL	O00401	505 aa	Predicted RBP	7.85	□□□□□ -1.15
SS18-223	ENST00000583595	ATG7	O95352	703 aa		7.85	□□□□□ -1.15
SS18-223	ENST00000583595	SKI	P12755	728 aa		7.85	□□□□□ -1.15
SS18-223	ENST00000583595	TMEM214	Q6NUQ4	689 aa	Known RBP	7.85	□□□□□ -1.15
SS18-223	ENST00000583595	TRIM22	Q8IYM9	498 aa		7.85	□□□□□ -1.15
SS18-223	ENST00000583595	GTF2E1	P29083	439 aa	Predicted RBP	7.84	□□□□□ -1.15
SS18-223	ENST00000583595	PHKA2	P46019	1235 aa		7.84	□□□□□ -1.15
SS18-223	ENST00000583595	GDF10	P55107	478 aa		7.84	□□□□□ -1.15
SS18-223	ENST00000583595	DBN1	Q16643	649 aa		7.84	□□□□□ -1.15
SS18-223	ENST00000583595	GNAS	Q5JWF2	1037 aa		7.84	□□□□□ -1.15
SS18-223	ENST00000583595	TBC1D9	Q6ZT07	1266 aa		7.84	□□□□□ -1.15
SS18-223	ENST00000583595	UNCX	A6NJT0	531 aa		7.83	□□□□□ -1.16
SS18-223	ENST00000583595	SCNN1D	P51172	638 aa		7.83	□□□□□ -1.16
SS18-223	ENST00000583595	TLR1	Q15399	786 aa		7.83	□□□□□ -1.16
SS18-223	ENST00000583595	NFATC2IP	Q8NCF5	419 aa		7.83	□□□□□ -1.16
SS18-223	ENST00000583595	ZNF837	Q96EG3	531 aa	Predicted RBP	7.83	□□□□□ -1.16
SS18-223	ENST00000583595	GMCL1	Q96IK5	515 aa		7.83	□□□□□ -1.16
SS18-223	ENST00000583595	F11	P03951	625 aa		7.82	□□□□□ -1.16
SS18-223	ENST00000583595	INHA	P05111	366 aa		7.82	□□□□□ -1.16
SS18-223	ENST00000583595	EML3	Q32P44	896 aa		7.82	□□□□□ -1.16
SS18-223	ENST00000583595	MAFB	Q9Y5Q3	323 aa	Predicted RBP	7.82	□□□□□ -1.16
SS18-223	ENST00000583595		H7C1W4	665 aa		7.81	□□□□□ -1.16
SS18-223	ENST00000583595	LZTS3	O60299	673 aa	Predicted RBP	7.81	□□□□□ -1.16
SS18-223	ENST00000583595	C4orf17	Q53FE4	359 aa		7.81	□□□□□ -1.16
SS18-223	ENST00000583595	FOXR1	Q6PIV2	292 aa		7.81	□□□□□ -1.16
SS18-223	ENST00000583595	PPARGC1B	Q86YN6	1023 aa	Known RBP	7.81	□□□□□ -1.16
SS18-223	ENST00000583595	NOD1	Q9Y239	953 aa		7.81	□□□□□ -1.16
SS18-223	ENST00000583595	PCDHGA11	Q9Y5H2	935 aa		7.81	□□□□□ -1.16
SS18-223	ENST00000583595	GPR25	O00155	361 aa		7.8	□□□□□ -1.16
SS18-223	ENST00000583595	NCOA4	Q13772	614 aa		7.8	□□□□□ -1.16
SS18-223	ENST00000583595	GAS6	Q14393	721 aa		7.8	□□□□□ -1.16
SS18-223	ENST00000583595	DEPDC4	Q8N2C3	294 aa		7.8	□□□□□ -1.16
SS18-223	ENST00000583595	RHBDD1	Q8TEB9	315 aa		7.8	□□□□□ -1.16
SS18-223	ENST00000583595	GTPBP3	Q969Y2	492 aa	Known RBP	7.8	□□□□□ -1.16
SS18-223	ENST00000583595	GPAM	Q9HCL2	828 aa		7.8	□□□□□ -1.16
SS18-223	ENST00000583595	SERTAD1	Q9UHV2	236 aa		7.8	□□□□□ -1.16
SS18-223	ENST00000583595		A0A1B0GTH6	734 aa		7.79	□□□□□ -1.16
SS18-223	ENST00000583595	USP17L5	A8MUK1	530 aa		7.79	□□□□□ -1.16
SS18-223	ENST00000583595	TMEM229A	B2RXF0	380 aa		7.79	□□□□□ -1.16
SS18-223	ENST00000583595	GTF2I	P78347	998 aa		7.79	□□□□□ -1.16
SS18-223	ENST00000583595	KANK4	Q5T7N3	995 aa	Predicted RBP	7.79	□□□□□ -1.16

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