RNA–Protein interactions for RNA: ENST00000582370.1

PDLIM1P3-201, Transcript of PDZ and LIM domain 1 pseudogene 3, humanhuman

BASIC

Gene PDLIM1P3, Length 599 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1P3-201ENST00000582370 MMP10P09238 476 aa12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 C9orf131Q5VYM1 1079 aa12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 MPRIPQ6WCQ1 1025 aa12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 RAPGEF4Q8WZA2 1011 aa12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 MAP3K19Q56UN5 1328 aa12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 COL5A3P25940 1745 aaPredicted RBP12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 TIAM2Q8IVF5 1701 aa12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 A0A1W2PP64 1363 aa12.02□□□□□ -0.49
PDLIM1P3-201ENST00000582370 FCHSD2O94868 740 aa12.01□□□□□ -0.49
PDLIM1P3-201ENST00000582370 PCDH10Q9P2E7 1040 aa12.01□□□□□ -0.49
PDLIM1P3-201ENST00000582370 CCDC88AQ3V6T2 1871 aa12□□□□□ -0.49
PDLIM1P3-201ENST00000582370 AMPHP49418 695 aa12□□□□□ -0.49
PDLIM1P3-201ENST00000582370 A0A0G2JLW4 131 aa11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 GNPATO15228 680 aa11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 TATP17735 454 aaPredicted RBP11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 SMIM5Q71RC9 77 aa11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 TESK2Q96S53 571 aa11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 RRAGCQ9HB90 399 aa11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 CCDC87Q9NVE4 849 aa11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 TERF2IPQ9NYB0 399 aa11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 ZC3H4Q9UPT8 1303 aaKnown RBP11.99□□□□□ -0.49
PDLIM1P3-201ENST00000582370 LOC102724428A0A0B4J2F2 783 aa11.98□□□□□ -0.49
PDLIM1P3-201ENST00000582370 SIK1P57059 783 aa11.98□□□□□ -0.49
PDLIM1P3-201ENST00000582370 NBPF6Q5VWK0 638 aa11.98□□□□□ -0.49
PDLIM1P3-201ENST00000582370 LINC00116Q8NCU8 138 aa11.98□□□□□ -0.49
PDLIM1P3-201ENST00000582370 TMC1Q8TDI8 760 aa11.98□□□□□ -0.49
PDLIM1P3-201ENST00000582370 NBPF4Q96M43 638 aa11.98□□□□□ -0.49
PDLIM1P3-201ENST00000582370 RNF181Q9P0P0 153 aa11.98□□□□□ -0.49
PDLIM1P3-201ENST00000582370 DLEC1Q9Y238 1755 aa11.97□□□□□ -0.49
PDLIM1P3-201ENST00000582370 DPEP1P16444 411 aa11.97□□□□□ -0.49
PDLIM1P3-201ENST00000582370 NLGN1Q8N2Q7 840 aa11.97□□□□□ -0.49
PDLIM1P3-201ENST00000582370 COG3Q96JB2 828 aa11.97□□□□□ -0.49
PDLIM1P3-201ENST00000582370 KIF20BQ96Q89 1820 aa11.96□□□□□ -0.49
PDLIM1P3-201ENST00000582370 DCAF5Q96JK2 942 aa11.96□□□□□ -0.49
PDLIM1P3-201ENST00000582370 SLC12A5Q9H2X9 1139 aa11.96□□□□□ -0.49
PDLIM1P3-201ENST00000582370 CYP27B1O15528 508 aa11.95□□□□□ -0.5
PDLIM1P3-201ENST00000582370 USHBP1Q8N6Y0 703 aa11.95□□□□□ -0.5
PDLIM1P3-201ENST00000582370 PIGBQ92521 554 aa11.95□□□□□ -0.5
PDLIM1P3-201ENST00000582370 PIM2Q9P1W9 311 aa11.95□□□□□ -0.5
PDLIM1P3-201ENST00000582370 KDM6AO15550 1401 aaPredicted RBP11.94□□□□□ -0.5
PDLIM1P3-201ENST00000582370 DICER1Q9UPY3 1922 aaKnown RBP11.94□□□□□ -0.5
PDLIM1P3-201ENST00000582370 ADRA2BP18089 450 aa11.94□□□□□ -0.5
PDLIM1P3-201ENST00000582370 KCNA3P22001 575 aa11.94□□□□□ -0.5
PDLIM1P3-201ENST00000582370 PARP3Q9Y6F1 533 aa11.94□□□□□ -0.5
PDLIM1P3-201ENST00000582370 MYH14Q7Z406 1995 aaKnown RBP11.94□□□□□ -0.5
PDLIM1P3-201ENST00000582370 VIRMAQ69YN4 1812 aaKnown RBP11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 VEGFAP15692 232 aaPredicted RBP11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 ATP6V1AP38606 617 aa11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 ITPK1Q13572 414 aa11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 NKX1-1Q15270 411 aaPredicted RBP11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 DALRD3Q5D0E6 543 aaKnown RBP11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 TRAPPC3LQ5T215 181 aa11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 PRDM10Q9NQV6 1147 aa11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 RTCBQ9Y3I0 505 aaKnown RBP11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 ANKRD26Q9UPS8 1709 aa11.93□□□□□ -0.5
PDLIM1P3-201ENST00000582370 INSRP06213 1382 aa11.92□□□□□ -0.5
PDLIM1P3-201ENST00000582370 KDRP35968 1356 aa11.92□□□□□ -0.5
PDLIM1P3-201ENST00000582370 KIF24Q5T7B8 1368 aa11.92□□□□□ -0.5
PDLIM1P3-201ENST00000582370 TMOD3Q9NYL9 352 aa11.92□□□□□ -0.5
PDLIM1P3-201ENST00000582370 NCAPD2Q15021 1401 aa11.92□□□□□ -0.5
PDLIM1P3-201ENST00000582370 FLT4P35916 1363 aa11.92□□□□□ -0.5
PDLIM1P3-201ENST00000582370 KIF7Q2M1P5 1343 aa11.91□□□□□ -0.5
PDLIM1P3-201ENST00000582370 WASHC2AQ641Q2 1341 aa11.91□□□□□ -0.5
PDLIM1P3-201ENST00000582370 GLTPD2A6NH11 291 aa11.91□□□□□ -0.5
PDLIM1P3-201ENST00000582370 GYS1P13807 737 aa11.91□□□□□ -0.5
PDLIM1P3-201ENST00000582370 AFDNP55196 1824 aaKnown RBP11.9□□□□□ -0.5
PDLIM1P3-201ENST00000582370 FBLN1P23142 703 aa11.9□□□□□ -0.5
PDLIM1P3-201ENST00000582370 RRS1Q15050 365 aaKnown RBP11.9□□□□□ -0.5
PDLIM1P3-201ENST00000582370 RC3H1Q5TC82 1133 aaKnown RBP11.89□□□□□ -0.51
PDLIM1P3-201ENST00000582370 ARHGEF1Q92888 912 aaKnown RBP11.89□□□□□ -0.51
PDLIM1P3-201ENST00000582370 CREBZFQ9NS37 354 aa11.89□□□□□ -0.51
PDLIM1P3-201ENST00000582370 ASAP1Q9ULH1 1129 aa11.89□□□□□ -0.51
PDLIM1P3-201ENST00000582370 NRXN2Q9P2S2 1712 aa11.89□□□□□ -0.51
PDLIM1P3-201ENST00000582370 CNTNAP4Q9C0A0 1308 aa11.88□□□□□ -0.51
PDLIM1P3-201ENST00000582370 FOXN1O15353 648 aa11.88□□□□□ -0.51
PDLIM1P3-201ENST00000582370 LMNB1P20700 586 aa11.88□□□□□ -0.51
PDLIM1P3-201ENST00000582370 RFC4P35249 363 aa11.88□□□□□ -0.51
PDLIM1P3-201ENST00000582370 FAM161AQ3B820 660 aa11.88□□□□□ -0.51
PDLIM1P3-201ENST00000582370 SPG7Q9UQ90 795 aa11.88□□□□□ -0.51
PDLIM1P3-201ENST00000582370 ADAMTS7Q9UKP4 1686 aa11.87□□□□□ -0.51
PDLIM1P3-201ENST00000582370 HSP90AB2PQ58FF8 381 aa11.87□□□□□ -0.51
PDLIM1P3-201ENST00000582370 FER1L6Q2WGJ9 1857 aa11.87□□□□□ -0.51
PDLIM1P3-201ENST00000582370 TJP1Q07157 1748 aa11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 RPS6KA4O75676 772 aa11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 CTCFP49711 727 aaPredicted RBP11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 RASSF7Q02833 373 aa11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 AIDAQ96BJ3 306 aa11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 ATG3Q9NT62 314 aa11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 MKRN1Q9UHC7 482 aaKnown RBP11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 CNTNAP1P78357 1384 aa11.86□□□□□ -0.51
PDLIM1P3-201ENST00000582370 SCN4AP35499 1836 aa11.85□□□□□ -0.51
PDLIM1P3-201ENST00000582370 CHRNA5P30532 468 aa11.84□□□□□ -0.51
PDLIM1P3-201ENST00000582370 IFNL2Q8IZJ0 200 aa11.84□□□□□ -0.51
PDLIM1P3-201ENST00000582370 USP42Q9H9J4 1324 aaKnown RBP11.84□□□□□ -0.51
PDLIM1P3-201ENST00000582370 NPC1L1Q9UHC9 1359 aa11.83□□□□□ -0.52
PDLIM1P3-201ENST00000582370 PHKG2P15735 406 aa11.83□□□□□ -0.52
PDLIM1P3-201ENST00000582370 DDR1Q08345 913 aa11.83□□□□□ -0.52
PDLIM1P3-201ENST00000582370 ABHD8Q96I13 439 aa11.83□□□□□ -0.52
PDLIM1P3-201ENST00000582370 SLC4A9Q96Q91 983 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms