RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, human

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFFL-208	ENST00000581039		A0A0G2JLW4	131 aa		13.76	□□□□□ -0.21
RFFL-208	ENST00000581039	TOMM70	O94826	608 aa		13.76	□□□□□ -0.21
RFFL-208	ENST00000581039	ARHGAP27	Q6ZUM4	889 aa		13.76	□□□□□ -0.21
RFFL-208	ENST00000581039	UBR3	Q6ZT12	1888 aa		13.76	□□□□□ -0.21
RFFL-208	ENST00000581039	TOGARAM1	Q9Y4F4	1720 aa		13.76	□□□□□ -0.21
RFFL-208	ENST00000581039	NCAPD2	Q15021	1401 aa		13.75	□□□□□ -0.21
RFFL-208	ENST00000581039	RBM42	Q9BTD8	480 aa	Known RBP	13.75	□□□□□ -0.21
RFFL-208	ENST00000581039	ADRA2B	P18089	450 aa		13.74	□□□□□ -0.21
RFFL-208	ENST00000581039	RFC4	P35249	363 aa		13.74	□□□□□ -0.21
RFFL-208	ENST00000581039	ARHGEF1	Q92888	912 aa	Known RBP	13.74	□□□□□ -0.21
RFFL-208	ENST00000581039	CCDC87	Q9NVE4	849 aa		13.74	□□□□□ -0.21
RFFL-208	ENST00000581039	POLK	Q9UBT6	870 aa		13.74	□□□□□ -0.21
RFFL-208	ENST00000581039	PKD1L3	Q7Z443	1732 aa		13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	ERVV-2	B6SEH9	535 aa		13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	FCHSD2	O94868	740 aa		13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	DPEP1	P16444	411 aa		13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	RC3H1	Q5TC82	1133 aa	Known RBP	13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	PARP3	Q9Y6F1	533 aa		13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	KIF20B	Q96Q89	1820 aa		13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	PXDNL	A1KZ92	1463 aa		13.73	□□□□□ -0.21
RFFL-208	ENST00000581039	MAP2	P11137	1827 aa	Known RBP	13.72	□□□□□ -0.21
RFFL-208	ENST00000581039	HSP90AB1	P08238	724 aa	Known RBP	13.72	□□□□□ -0.21
RFFL-208	ENST00000581039	DCAF5	Q96JK2	942 aa		13.72	□□□□□ -0.21
RFFL-208	ENST00000581039	RPS6KA4	O75676	772 aa		13.71	□□□□□ -0.21
RFFL-208	ENST00000581039	GYS1	P13807	737 aa		13.71	□□□□□ -0.21
RFFL-208	ENST00000581039	TNNT2	P45379	298 aa	Predicted RBP	13.71	□□□□□ -0.21
RFFL-208	ENST00000581039	EIF4A2	Q14240	407 aa	Known RBP	13.71	□□□□□ -0.21
RFFL-208	ENST00000581039	DNAJC5G	Q8N7S2	189 aa		13.71	□□□□□ -0.21
RFFL-208	ENST00000581039	SLC4A9	Q96Q91	983 aa		13.71	□□□□□ -0.21
RFFL-208	ENST00000581039	NMRK2	Q9NPI5	230 aa		13.71	□□□□□ -0.21
RFFL-208	ENST00000581039	CABP4	P57796	275 aa		13.7	□□□□□ -0.22
RFFL-208	ENST00000581039	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.7	□□□□□ -0.22
RFFL-208	ENST00000581039	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.7	□□□□□ -0.22
RFFL-208	ENST00000581039	CNTNAP4	Q9C0A0	1308 aa		13.69	□□□□□ -0.22
RFFL-208	ENST00000581039	CIC	Q96RK0	1608 aa	Predicted RBP	13.69	□□□□□ -0.22
RFFL-208	ENST00000581039	C9orf131	Q5VYM1	1079 aa		13.69	□□□□□ -0.22
RFFL-208	ENST00000581039	RBM46	Q8TBY0	533 aa	Known RBP	13.69	□□□□□ -0.22
RFFL-208	ENST00000581039	PIM2	Q9P1W9	311 aa		13.69	□□□□□ -0.22
RFFL-208	ENST00000581039	C10orf71	Q711Q0	1435 aa		13.69	□□□□□ -0.22
RFFL-208	ENST00000581039	KDR	P35968	1356 aa		13.69	□□□□□ -0.22
RFFL-208	ENST00000581039	AMOT	Q4VCS5	1084 aa		13.68	□□□□□ -0.22
RFFL-208	ENST00000581039	POLR3GL	Q9BT43	218 aa		13.68	□□□□□ -0.22
RFFL-208	ENST00000581039	PLEKHG2	Q9H7P9	1386 aa		13.68	□□□□□ -0.22
RFFL-208	ENST00000581039	PTCD1	O75127	700 aa	Known RBP	13.67	□□□□□ -0.22
RFFL-208	ENST00000581039	KCNA3	P22001	575 aa		13.67	□□□□□ -0.22
RFFL-208	ENST00000581039	MTHFS	P49914	203 aa		13.67	□□□□□ -0.22
RFFL-208	ENST00000581039	DALRD3	Q5D0E6	543 aa	Known RBP	13.67	□□□□□ -0.22
RFFL-208	ENST00000581039	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.67	□□□□□ -0.22
RFFL-208	ENST00000581039	KDM2B	Q8NHM5	1336 aa		13.66	□□□□□ -0.22
RFFL-208	ENST00000581039	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.66	□□□□□ -0.22
RFFL-208	ENST00000581039	KIF13B	Q9NQT8	1826 aa		13.65	□□□□□ -0.22
RFFL-208	ENST00000581039	CRKL	P46109	303 aa	Known RBP	13.65	□□□□□ -0.22
RFFL-208	ENST00000581039	FSTL1	Q12841	308 aa		13.65	□□□□□ -0.22
RFFL-208	ENST00000581039	C1orf141	Q5JVX7	400 aa		13.65	□□□□□ -0.22
RFFL-208	ENST00000581039	NFATC2IP	Q8NCF5	419 aa		13.65	□□□□□ -0.22
RFFL-208	ENST00000581039	FKBP8	Q14318	412 aa		13.64	□□□□□ -0.23
RFFL-208	ENST00000581039	RNF181	Q9P0P0	153 aa		13.64	□□□□□ -0.23
RFFL-208	ENST00000581039	SRP68	Q9UHB9	627 aa	Known RBP	13.64	□□□□□ -0.23
RFFL-208	ENST00000581039	C4A	P0C0L4	1744 aa		13.64	□□□□□ -0.23
RFFL-208	ENST00000581039	ANKRD26	Q9UPS8	1709 aa		13.64	□□□□□ -0.23
RFFL-208	ENST00000581039	KLRG1	Q96E93	195 aa		13.63	□□□□□ -0.23
RFFL-208	ENST00000581039	RRAGC	Q9HB90	399 aa		13.63	□□□□□ -0.23
RFFL-208	ENST00000581039	KIAA1551	Q9HCM1	1747 aa		13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	ZPR1	O75312	459 aa		13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	CHRNA5	P30532	468 aa		13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	HTRA3	P83110	453 aa		13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	DDR1	Q08345	913 aa		13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	TIMELESS	Q9UNS1	1208 aa		13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	KDM6A	O15550	1401 aa	Predicted RBP	13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	USP42	Q9H9J4	1324 aa	Known RBP	13.62	□□□□□ -0.23
RFFL-208	ENST00000581039	ZNF831	Q5JPB2	1677 aa		13.61	□□□□□ -0.23
RFFL-208	ENST00000581039	POLRMT	O00411	1230 aa	Known RBP	13.6	□□□□□ -0.23
RFFL-208	ENST00000581039	TM4SF1	P30408	202 aa		13.6	□□□□□ -0.23
RFFL-208	ENST00000581039	SULT6B1	Q6IMI4	303 aa		13.6	□□□□□ -0.23
RFFL-208	ENST00000581039	INTS5	Q6P9B9	1019 aa	Known RBP	13.6	□□□□□ -0.23
RFFL-208	ENST00000581039	AEBP1	Q8IUX7	1158 aa		13.6	□□□□□ -0.23
RFFL-208	ENST00000581039	JMY	Q8N9B5	988 aa		13.6	□□□□□ -0.23
RFFL-208	ENST00000581039	PANK3	Q9H999	370 aa		13.6	□□□□□ -0.23
RFFL-208	ENST00000581039	KCP	Q6ZWJ8	1503 aa		13.59	□□□□□ -0.23
RFFL-208	ENST00000581039	USPL1	Q5W0Q7	1092 aa		13.59	□□□□□ -0.23
RFFL-208	ENST00000581039	MORC1	Q86VD1	984 aa		13.59	□□□□□ -0.23
RFFL-208	ENST00000581039	SMC1B	Q8NDV3	1235 aa		13.59	□□□□□ -0.23
RFFL-208	ENST00000581039	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.58	□□□□□ -0.24
RFFL-208	ENST00000581039	COL5A3	P25940	1745 aa	Predicted RBP	13.58	□□□□□ -0.24
RFFL-208	ENST00000581039	MYH14	Q7Z406	1995 aa	Known RBP	13.58	□□□□□ -0.24
RFFL-208	ENST00000581039	DNAJC10	Q8IXB1	793 aa		13.57	□□□□□ -0.24
RFFL-208	ENST00000581039	ARFGEF1	Q9Y6D6	1849 aa		13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	VEGFA	P15692	232 aa	Predicted RBP	13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	LMNB1	P20700	586 aa		13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	AKAP4	Q5JQC9	854 aa		13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	NARF	Q9UHQ1	456 aa		13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	BRCA1	P38398	1863 aa	Known RBP	13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	WDR90	Q96KV7	1748 aa		13.56	□□□□□ -0.24
RFFL-208	ENST00000581039	CYP19A1	P11511	503 aa	Predicted RBP	13.55	□□□□□ -0.24
RFFL-208	ENST00000581039	RASSF7	Q02833	373 aa		13.55	□□□□□ -0.24
RFFL-208	ENST00000581039	NFIX	Q14938	502 aa		13.55	□□□□□ -0.24
RFFL-208	ENST00000581039	SLC52A2	Q9HAB3	445 aa		13.55	□□□□□ -0.24
RFFL-208	ENST00000581039	SOS1	Q07889	1333 aa	Predicted RBP	13.55	□□□□□ -0.24
RFFL-208	ENST00000581039	GLTPD2	A6NH11	291 aa		13.54	□□□□□ -0.24

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