RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 KDM6AO15550 1401 aaPredicted RBP19.7■□□□□ 0.74
SMARCE1-216ENST00000580419 RC3H1Q5TC82 1133 aaKnown RBP19.7■□□□□ 0.74
SMARCE1-216ENST00000580419 SCN11AQ9UI33 1791 aa19.7■□□□□ 0.74
SMARCE1-216ENST00000580419 C1orf141Q5JVX7 400 aa19.69■□□□□ 0.74
SMARCE1-216ENST00000580419 SULT6B1Q6IMI4 303 aa19.69■□□□□ 0.74
SMARCE1-216ENST00000580419 ZNF530Q6P9A1 599 aaPredicted RBP19.69■□□□□ 0.74
SMARCE1-216ENST00000580419 COL5A3P25940 1745 aaPredicted RBP19.68■□□□□ 0.74
SMARCE1-216ENST00000580419 ADRA2BP18089 450 aa19.68■□□□□ 0.74
SMARCE1-216ENST00000580419 ATP6V1AP38606 617 aa19.68■□□□□ 0.74
SMARCE1-216ENST00000580419 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.67■□□□□ 0.74
SMARCE1-216ENST00000580419 MTHFSP49914 203 aa19.67■□□□□ 0.74
SMARCE1-216ENST00000580419 LINC00116Q8NCU8 138 aa19.67■□□□□ 0.74
SMARCE1-216ENST00000580419 MSH5O43196 834 aa19.66■□□□□ 0.74
SMARCE1-216ENST00000580419 ITPK1Q13572 414 aa19.66■□□□□ 0.74
SMARCE1-216ENST00000580419 AKAP4Q5JQC9 854 aa19.66■□□□□ 0.74
SMARCE1-216ENST00000580419 AEBP1Q8IUX7 1158 aa19.66■□□□□ 0.74
SMARCE1-216ENST00000580419 CNTNAP4Q9C0A0 1308 aa19.66■□□□□ 0.74
SMARCE1-216ENST00000580419 ADAMTS7Q9UKP4 1686 aa19.65■□□□□ 0.74
SMARCE1-216ENST00000580419 GRIN3BO60391 1043 aa19.65■□□□□ 0.74
SMARCE1-216ENST00000580419 CABP4P57796 275 aa19.65■□□□□ 0.74
SMARCE1-216ENST00000580419 MRC1P22897 1456 aa19.64■□□□□ 0.73
SMARCE1-216ENST00000580419 MYH14Q7Z406 1995 aaKnown RBP19.63■□□□□ 0.73
SMARCE1-216ENST00000580419 GPR162Q16538 588 aa19.63■□□□□ 0.73
SMARCE1-216ENST00000580419 VIRMAQ69YN4 1812 aaKnown RBP19.62■□□□□ 0.73
SMARCE1-216ENST00000580419 GNPATO15228 680 aa19.62■□□□□ 0.73
SMARCE1-216ENST00000580419 DIAPH1O60610 1272 aaKnown RBP19.62■□□□□ 0.73
SMARCE1-216ENST00000580419 AMIGO3Q86WK7 504 aa19.62■□□□□ 0.73
SMARCE1-216ENST00000580419 SLC4A9Q96Q91 983 aa19.62■□□□□ 0.73
SMARCE1-216ENST00000580419 KIF13BQ9NQT8 1826 aa19.61■□□□□ 0.73
SMARCE1-216ENST00000580419 RTCBQ9Y3I0 505 aaKnown RBP19.61■□□□□ 0.73
SMARCE1-216ENST00000580419 COL3A1P02461 1466 aaPredicted RBP19.6■□□□□ 0.73
SMARCE1-216ENST00000580419 RPS6KA4O75676 772 aa19.6■□□□□ 0.73
SMARCE1-216ENST00000580419 NLGN1Q8N2Q7 840 aa19.6■□□□□ 0.73
SMARCE1-216ENST00000580419 NFATC2IPQ8NCF5 419 aa19.6■□□□□ 0.73
SMARCE1-216ENST00000580419 NLGN2Q8NFZ4 835 aa19.6■□□□□ 0.73
SMARCE1-216ENST00000580419 TRAPPC3LQ5T215 181 aa19.59■□□□□ 0.73
SMARCE1-216ENST00000580419 ZNF784Q8NCA9 323 aaPredicted RBP19.59■□□□□ 0.73
SMARCE1-216ENST00000580419 MSL1Q68DK7 614 aa19.58■□□□□ 0.72
SMARCE1-216ENST00000580419 SLC52A2Q9HAB3 445 aa19.58■□□□□ 0.72
SMARCE1-216ENST00000580419 PHF14O94880 888 aa19.57■□□□□ 0.72
SMARCE1-216ENST00000580419 CC2D1BQ5T0F9 858 aaKnown RBP19.57■□□□□ 0.72
SMARCE1-216ENST00000580419 RBM42Q9BTD8 480 aaKnown RBP19.57■□□□□ 0.72
SMARCE1-216ENST00000580419 TJP1Q07157 1748 aa19.56■□□□□ 0.72
SMARCE1-216ENST00000580419 VSIG10Q8N0Z9 540 aa19.55■□□□□ 0.72
SMARCE1-216ENST00000580419 KLHL34Q8N239 644 aa19.55■□□□□ 0.72
SMARCE1-216ENST00000580419 C4AP0C0L4 1744 aa19.54■□□□□ 0.72
SMARCE1-216ENST00000580419 RNMTO43148 476 aaKnown RBP19.54■□□□□ 0.72
SMARCE1-216ENST00000580419 ARHGEF1Q92888 912 aaKnown RBP19.54■□□□□ 0.72
SMARCE1-216ENST00000580419 UBR2Q8IWV8 1755 aa19.53■□□□□ 0.72
SMARCE1-216ENST00000580419 YBX3P16989 372 aaKnown RBP eCLIP19.53■□□□□ 0.722e-7■■□□□ 12.5
SMARCE1-216ENST00000580419 MTHFSDQ2M296 383 aaKnown RBP19.53■□□□□ 0.72
SMARCE1-216ENST00000580419 HMOX1P09601 288 aa19.52■□□□□ 0.72
SMARCE1-216ENST00000580419 GYS1P13807 737 aa19.52■□□□□ 0.72
SMARCE1-216ENST00000580419 RFC4P35249 363 aa19.52■□□□□ 0.72
SMARCE1-216ENST00000580419 CRKLP46109 303 aaKnown RBP19.52■□□□□ 0.72
SMARCE1-216ENST00000580419 TGFB2P61812 414 aa19.52■□□□□ 0.72
SMARCE1-216ENST00000580419 GAS2L2Q8NHY3 880 aa19.52■□□□□ 0.72
SMARCE1-216ENST00000580419 PTCD1O75127 700 aaKnown RBP19.51■□□□□ 0.71
SMARCE1-216ENST00000580419 MMP10P09238 476 aa19.51■□□□□ 0.71
SMARCE1-216ENST00000580419 CFAP53Q96M91 514 aa19.51■□□□□ 0.71
SMARCE1-216ENST00000580419 LGR6Q9HBX8 967 aa19.51■□□□□ 0.71
SMARCE1-216ENST00000580419 KCPQ6ZWJ8 1503 aa19.5■□□□□ 0.71
SMARCE1-216ENST00000580419 C10orf71Q711Q0 1435 aa19.5■□□□□ 0.71
SMARCE1-216ENST00000580419 INTS5Q6P9B9 1019 aaKnown RBP19.49■□□□□ 0.71
SMARCE1-216ENST00000580419 SIPA1L3O60292 1781 aaPredicted RBP19.49■□□□□ 0.71
SMARCE1-216ENST00000580419 KIAA1551Q9HCM1 1747 aa19.48■□□□□ 0.71
SMARCE1-216ENST00000580419 SMIM5Q71RC9 77 aa19.48■□□□□ 0.71
SMARCE1-216ENST00000580419 NUDCQ9Y266 331 aa19.48■□□□□ 0.71
SMARCE1-216ENST00000580419 USP42Q9H9J4 1324 aaKnown RBP19.48■□□□□ 0.71
SMARCE1-216ENST00000580419 CEMIPQ8WUJ3 1361 aa19.47■□□□□ 0.71
SMARCE1-216ENST00000580419 GNAT3A8MTJ3 354 aa19.47■□□□□ 0.71
SMARCE1-216ENST00000580419 CYP19A1P11511 503 aaPredicted RBP19.47■□□□□ 0.71
SMARCE1-216ENST00000580419 CCDC87Q9NVE4 849 aa19.47■□□□□ 0.71
SMARCE1-216ENST00000580419 BRCA1P38398 1863 aaKnown RBP19.47■□□□□ 0.71
SMARCE1-216ENST00000580419 PELP1Q8IZL8 1130 aaKnown RBP19.46■□□□□ 0.71
SMARCE1-216ENST00000580419 TEX13AQ9BXU3 409 aaPredicted RBP19.46■□□□□ 0.71
SMARCE1-216ENST00000580419 FCHSD2O94868 740 aa19.45■□□□□ 0.7
SMARCE1-216ENST00000580419 PARP3Q9Y6F1 533 aa19.45■□□□□ 0.7
SMARCE1-216ENST00000580419 PXDNLA1KZ92 1463 aa19.45■□□□□ 0.7
SMARCE1-216ENST00000580419 SOS1Q07889 1333 aaPredicted RBP19.45■□□□□ 0.7
SMARCE1-216ENST00000580419 ADCY9O60503 1353 aa19.44■□□□□ 0.7
SMARCE1-216ENST00000580419 U2SURPO15042 1029 aaKnown RBP19.44■□□□□ 0.7
SMARCE1-216ENST00000580419 IL17REQ8NFR9 667 aa19.44■□□□□ 0.7
SMARCE1-216ENST00000580419 RSPH6AQ9H0K4 717 aa19.44■□□□□ 0.7
SMARCE1-216ENST00000580419 PPP2R1AP30153 589 aa19.43■□□□□ 0.7
SMARCE1-216ENST00000580419 DNAJC10Q8IXB1 793 aa19.43■□□□□ 0.7
SMARCE1-216ENST00000580419 ARFGEF1Q9Y6D6 1849 aa19.42■□□□□ 0.7
SMARCE1-216ENST00000580419 STARD3NLO95772 234 aa19.42■□□□□ 0.7
SMARCE1-216ENST00000580419 TM4SF1P30408 202 aa19.42■□□□□ 0.7
SMARCE1-216ENST00000580419 TEFQ10587 303 aa19.42■□□□□ 0.7
SMARCE1-216ENST00000580419 HTATSF1O43719 755 aaKnown RBP19.41■□□□□ 0.7
SMARCE1-216ENST00000580419 ZNF790Q6PG37 636 aa19.41■□□□□ 0.7
SMARCE1-216ENST00000580419 TTC5Q8N0Z6 440 aa19.41■□□□□ 0.7
SMARCE1-216ENST00000580419 NARFQ9UHQ1 456 aa19.41■□□□□ 0.7
SMARCE1-216ENST00000580419 NRXN2Q9P2S2 1712 aa19.4■□□□□ 0.7
SMARCE1-216ENST00000580419 ZPR1O75312 459 aa19.4■□□□□ 0.7
SMARCE1-216ENST00000580419 SLC39A6Q13433 755 aa19.4■□□□□ 0.7
SMARCE1-216ENST00000580419 N4BP2Q86UW6 1770 aaPredicted RBP19.39■□□□□ 0.7
SMARCE1-216ENST00000580419 FKBP8Q14318 412 aa19.39■□□□□ 0.69
SMARCE1-216ENST00000580419 COL15A1P39059 1388 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms