RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 IRX6P78412 446 aaPredicted RBP32.49■■■□□ 2.79
SHMT1-207ENST00000580002 MARCH10Q8NA82 808 aaPredicted RBP32.49■■■□□ 2.79
SHMT1-207ENST00000580002 BCL2L13Q9BXK5 485 aa32.49■■■□□ 2.79
SHMT1-207ENST00000580002 TNS2Q63HR2 1409 aa32.49■■■□□ 2.79
SHMT1-207ENST00000580002 VAMP4O75379 141 aa32.47■■■□□ 2.79
SHMT1-207ENST00000580002 RARSP54136 660 aaKnown RBP32.47■■■□□ 2.79
SHMT1-207ENST00000580002 SLC39A6Q13433 755 aa32.47■■■□□ 2.79
SHMT1-207ENST00000580002 PLIN1O60240 522 aa32.47■■■□□ 2.79
SHMT1-207ENST00000580002 A0A0G2JS52 829 aa32.46■■■□□ 2.79
SHMT1-207ENST00000580002 MYT1Q01538 1121 aa32.46■■■□□ 2.79
SHMT1-207ENST00000580002 TCERG1O14776 1098 aaKnown RBP32.45■■■□□ 2.79
SHMT1-207ENST00000580002 CABP4P57796 275 aa32.45■■■□□ 2.79
SHMT1-207ENST00000580002 TWISTNBQ3B726 338 aaPredicted RBP32.45■■■□□ 2.78
SHMT1-207ENST00000580002 RNF123Q5XPI4 1314 aa32.45■■■□□ 2.78
SHMT1-207ENST00000580002 SIPA1L3O60292 1781 aaPredicted RBP32.43■■■□□ 2.78
SHMT1-207ENST00000580002 BABAM1Q9NWV8 329 aa32.42■■■□□ 2.78
SHMT1-207ENST00000580002 EIF4A1P60842 406 aaKnown RBP32.42■■■□□ 2.78
SHMT1-207ENST00000580002 TOGARAM1Q9Y4F4 1720 aa32.41■■■□□ 2.78
SHMT1-207ENST00000580002 SSH1Q8WYL5 1049 aa32.41■■■□□ 2.78
SHMT1-207ENST00000580002 GTF3C3Q9Y5Q9 886 aa32.41■■■□□ 2.78
SHMT1-207ENST00000580002 MRC1P22897 1456 aa32.41■■■□□ 2.78
SHMT1-207ENST00000580002 ERVV-2B6SEH9 535 aa32.4■■■□□ 2.78
SHMT1-207ENST00000580002 RRP1P56182 461 aaKnown RBP32.4■■■□□ 2.78
SHMT1-207ENST00000580002 FAM182BQ5T319 152 aa32.39■■■□□ 2.78
SHMT1-207ENST00000580002 ONECUT3O60422 494 aaPredicted RBP32.37■■■□□ 2.77
SHMT1-207ENST00000580002 CT47B1P0C2W7 299 aaPredicted RBP32.37■■■□□ 2.77
SHMT1-207ENST00000580002 RGS17Q9UGC6 210 aaPredicted RBP32.37■■■□□ 2.77
SHMT1-207ENST00000580002 KDM3BQ7LBC6 1761 aa32.37■■■□□ 2.77
SHMT1-207ENST00000580002 ZNF790Q6PG37 636 aa32.37■■■□□ 2.77
SHMT1-207ENST00000580002 SEPT12Q8IYM1 358 aa32.37■■■□□ 2.77
SHMT1-207ENST00000580002 ACSBG1Q96GR2 724 aa32.37■■■□□ 2.77
SHMT1-207ENST00000580002 THSD7AQ9UPZ6 1657 aa32.36■■■□□ 2.77
SHMT1-207ENST00000580002 PRAMEF22A3QJZ6 481 aa32.36■■■□□ 2.77
SHMT1-207ENST00000580002 PIGBQ92521 554 aa32.36■■■□□ 2.77
SHMT1-207ENST00000580002 PRIM1P49642 420 aaKnown RBP32.35■■■□□ 2.77
SHMT1-207ENST00000580002 NECTIN2Q92692 538 aa32.35■■■□□ 2.77
SHMT1-207ENST00000580002 FKBP8Q14318 412 aa32.33■■■□□ 2.77
SHMT1-207ENST00000580002 ZNF772Q68DY9 489 aaPredicted RBP32.33■■■□□ 2.77
SHMT1-207ENST00000580002 SMC4Q9NTJ3 1288 aa32.33■■■□□ 2.77
SHMT1-207ENST00000580002 C20orf194Q5TEA3 1177 aa32.32■■■□□ 2.77
SHMT1-207ENST00000580002 SYTL4Q96C24 671 aaPredicted RBP32.32■■■□□ 2.77
SHMT1-207ENST00000580002 TNNQ9UQP3 1299 aa32.32■■■□□ 2.77
SHMT1-207ENST00000580002 ZNF496Q96IT1 587 aaPredicted RBP32.32■■■□□ 2.76
SHMT1-207ENST00000580002 TMOD3Q9NYL9 352 aa32.32■■■□□ 2.76
SHMT1-207ENST00000580002 KAT6BQ8WYB5 2073 aa32.31■■■□□ 2.76
SHMT1-207ENST00000580002 FRAT1Q92837 279 aaPredicted RBP32.31■■■□□ 2.76
SHMT1-207ENST00000580002 ASAP1Q9ULH1 1129 aa32.3■■■□□ 2.76
SHMT1-207ENST00000580002 KCNQ2O43526 872 aa32.29■■■□□ 2.76
SHMT1-207ENST00000580002 MRPL50Q8N5N7 158 aaKnown RBP32.29■■■□□ 2.76
SHMT1-207ENST00000580002 HEG1Q9ULI3 1381 aa32.28■■■□□ 2.76
SHMT1-207ENST00000580002 GIGYF1O75420 1035 aaPredicted RBP32.27■■■□□ 2.76
SHMT1-207ENST00000580002 ALDH1L2Q3SY69 923 aa32.27■■■□□ 2.76
SHMT1-207ENST00000580002 EIF2S2P20042 333 aaKnown RBP32.27■■■□□ 2.76
SHMT1-207ENST00000580002 PTF1AQ7RTS3 328 aa32.27■■■□□ 2.76
SHMT1-207ENST00000580002 ITGB4P16144 1822 aa32.26■■■□□ 2.76
SHMT1-207ENST00000580002 POTEAQ6S8J7 498 aa32.26■■■□□ 2.75
SHMT1-207ENST00000580002 TTC5Q8N0Z6 440 aa32.26■■■□□ 2.75
SHMT1-207ENST00000580002 RBM6P78332 1123 aaKnown RBP32.25■■■□□ 2.75
SHMT1-207ENST00000580002 ATG3Q9NT62 314 aa32.25■■■□□ 2.75
SHMT1-207ENST00000580002 NOB1Q9ULX3 412 aaKnown RBP32.25■■■□□ 2.75
SHMT1-207ENST00000580002 BCL9O00512 1426 aa32.25■■■□□ 2.75
SHMT1-207ENST00000580002 DOT1LQ8TEK3 1739 aa32.25■■■□□ 2.75
SHMT1-207ENST00000580002 PTCD1O75127 700 aaKnown RBP32.24■■■□□ 2.75
SHMT1-207ENST00000580002 NEFLP07196 543 aa32.23■■■□□ 2.75
SHMT1-207ENST00000580002 ZNF428Q96B54 188 aa32.23■■■□□ 2.75
SHMT1-207ENST00000580002 ILDR1Q86SU0 546 aaPredicted RBP32.22■■■□□ 2.75
SHMT1-207ENST00000580002 SLC4A2P04920 1241 aa32.2■■■□□ 2.75
SHMT1-207ENST00000580002 HDGFL1Q5TGJ6 251 aa32.2■■■□□ 2.75
SHMT1-207ENST00000580002 G2E3Q7L622 706 aa32.2■■■□□ 2.75
SHMT1-207ENST00000580002 FMNL2Q96PY5 1086 aa32.2■■■□□ 2.75
SHMT1-207ENST00000580002 USP16Q9Y5T5 823 aa32.2■■■□□ 2.75
SHMT1-207ENST00000580002 CLUAP1Q96AJ1 413 aa32.19■■■□□ 2.74
SHMT1-207ENST00000580002 KCPQ6ZWJ8 1503 aa32.18■■■□□ 2.74
SHMT1-207ENST00000580002 ANXA1P04083 346 aa32.18■■■□□ 2.74
SHMT1-207ENST00000580002 CANXP27824 592 aaKnown RBP32.18■■■□□ 2.74
SHMT1-207ENST00000580002 RLBP1P12271 317 aa32.17■■■□□ 2.74
SHMT1-207ENST00000580002 RXRBP28702 533 aa32.17■■■□□ 2.74
SHMT1-207ENST00000580002 PANK1Q8TE04 598 aa32.17■■■□□ 2.74
SHMT1-207ENST00000580002 PAPPAQ13219 1627 aa32.17■■■□□ 2.74
SHMT1-207ENST00000580002 BRPF1P55201 1214 aaPredicted RBP32.17■■■□□ 2.74
SHMT1-207ENST00000580002 CCDC30Q5VVM6 783 aa32.17■■■□□ 2.74
SHMT1-207ENST00000580002 GOLGA6L2Q8N9W4 650 aaPredicted RBP32.17■■■□□ 2.74
SHMT1-207ENST00000580002 HOXB7P09629 217 aa32.15■■■□□ 2.74
SHMT1-207ENST00000580002 SNRPA1P09661 255 aaKnown RBP32.15■■■□□ 2.74
SHMT1-207ENST00000580002 SLC4A9Q96Q91 983 aa32.15■■■□□ 2.74
SHMT1-207ENST00000580002 CHPF2Q9P2E5 772 aa32.15■■■□□ 2.74
SHMT1-207ENST00000580002 C5P01031 1676 aa32.14■■■□□ 2.74
SHMT1-207ENST00000580002 TRIM27P14373 513 aa32.14■■■□□ 2.74
SHMT1-207ENST00000580002 EXOC6Q8TAG9 804 aa32.14■■■□□ 2.74
SHMT1-207ENST00000580002 CRBNQ96SW2 442 aa32.14■■■□□ 2.74
SHMT1-207ENST00000580002 RBM42Q9BTD8 480 aaKnown RBP32.14■■■□□ 2.74
SHMT1-207ENST00000580002 BRWD3Q6RI45 1802 aa32.14■■■□□ 2.74
SHMT1-207ENST00000580002 PROSER3Q2NL68 480 aa32.14■■■□□ 2.74
SHMT1-207ENST00000580002 ZKSCAN2Q63HK3 967 aa32.14■■■□□ 2.74
SHMT1-207ENST00000580002 SOS1Q07889 1333 aaPredicted RBP32.13■■■□□ 2.73
SHMT1-207ENST00000580002 PIP4K2AP48426 406 aaPredicted RBP32.13■■■□□ 2.73
SHMT1-207ENST00000580002 KRT27Q7Z3Y8 459 aa32.13■■■□□ 2.73
SHMT1-207ENST00000580002 UBR2Q8IWV8 1755 aa32.12■■■□□ 2.73
SHMT1-207ENST00000580002 PHAXQ9H814 394 aaKnown RBP32.12■■■□□ 2.73
SHMT1-207ENST00000580002 ATF7IPQ6VMQ6 1270 aa32.11■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms