RNA–Protein interactions for RNA: ENST00000578218.5

THRA-208, Transcript of thyroid hormone receptor alpha, human

TSL 4

Gene THRA, Length 907 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
THRA-208	ENST00000578218	ZNF831	Q5JPB2	1677 aa		34.21	■■■■□ 3.07
THRA-208	ENST00000578218	COL5A3	P25940	1745 aa	Predicted RBP	34.2	■■■■□ 3.07
THRA-208	ENST00000578218	GIGYF1	O75420	1035 aa	Predicted RBP	34.19	■■■■□ 3.06
THRA-208	ENST00000578218	C1QTNF8	P60827	252 aa		34.19	■■■■□ 3.06
THRA-208	ENST00000578218	ATG3	Q9NT62	314 aa		34.19	■■■■□ 3.06
THRA-208	ENST00000578218	KDR	P35968	1356 aa		34.19	■■■■□ 3.06
THRA-208	ENST00000578218	HSP90AB1	P08238	724 aa	Known RBP	34.18	■■■■□ 3.06
THRA-208	ENST00000578218	MORC1	Q86VD1	984 aa		34.18	■■■■□ 3.06
THRA-208	ENST00000578218	SENP3-EIF4A1	A0A087X0R7	540 aa		34.17	■■■■□ 3.06
THRA-208	ENST00000578218	PLEKHO1	Q53GL0	409 aa	Predicted RBP	34.16	■■■■□ 3.06
THRA-208	ENST00000578218	ZNF530	Q6P9A1	599 aa	Predicted RBP	34.16	■■■■□ 3.06
THRA-208	ENST00000578218	KDM6A	O15550	1401 aa	Predicted RBP	34.15	■■■■□ 3.06
THRA-208	ENST00000578218	DCAF5	Q96JK2	942 aa		34.15	■■■■□ 3.06
THRA-208	ENST00000578218	ERVV-2	B6SEH9	535 aa		34.14	■■■■□ 3.06
THRA-208	ENST00000578218	RBM42	Q9BTD8	480 aa	Known RBP	34.13	■■■■□ 3.05
THRA-208	ENST00000578218	AMOT	Q4VCS5	1084 aa		34.12	■■■■□ 3.05
THRA-208	ENST00000578218	KNSTRN	Q9Y448	316 aa		34.11	■■■■□ 3.05
THRA-208	ENST00000578218	ATP10D	Q9P241	1426 aa		34.1	■■■■□ 3.05
THRA-208	ENST00000578218	CIC	Q96RK0	1608 aa	Predicted RBP	34.09	■■■■□ 3.05
THRA-208	ENST00000578218	C1orf141	Q5JVX7	400 aa		34.09	■■■■□ 3.05
THRA-208	ENST00000578218	AEBP1	Q8IUX7	1158 aa		34.09	■■■■□ 3.05
THRA-208	ENST00000578218	WWC3	Q9ULE0	1092 aa		34.09	■■■■□ 3.05
THRA-208	ENST00000578218	RTCB	Q9Y3I0	505 aa	Known RBP	34.09	■■■■□ 3.05
THRA-208	ENST00000578218	C4A	P0C0L4	1744 aa		34.09	■■■■□ 3.05
THRA-208	ENST00000578218	CABP4	P57796	275 aa		34.08	■■■■□ 3.05
THRA-208	ENST00000578218	KIF13B	Q9NQT8	1826 aa		34.07	■■■■□ 3.04
THRA-208	ENST00000578218	SCN11A	Q9UI33	1791 aa		34.06	■■■■□ 3.04
THRA-208	ENST00000578218	MMP10	P09238	476 aa		34.05	■■■■□ 3.04
THRA-208	ENST00000578218	SLC4A9	Q96Q91	983 aa		34.05	■■■■□ 3.04
THRA-208	ENST00000578218	MTHFS	P49914	203 aa		34.04	■■■■□ 3.04
THRA-208	ENST00000578218	TRAPPC3L	Q5T215	181 aa		34.04	■■■■□ 3.04
THRA-208	ENST00000578218	SULT6B1	Q6IMI4	303 aa		34.04	■■■■□ 3.04
THRA-208	ENST00000578218	CNTNAP4	Q9C0A0	1308 aa		34.04	■■■■□ 3.04
THRA-208	ENST00000578218	KIAA1551	Q9HCM1	1747 aa		34.03	■■■■□ 3.04
THRA-208	ENST00000578218	TJP1	Q07157	1748 aa		34.02	■■■■□ 3.04
THRA-208	ENST00000578218	N4BP2	Q86UW6	1770 aa	Predicted RBP	34.02	■■■■□ 3.04
THRA-208	ENST00000578218	ADRA2B	P18089	450 aa		34.01	■■■■□ 3.03
THRA-208	ENST00000578218	ADCY9	O60503	1353 aa		34	■■■■□ 3.03
THRA-208	ENST00000578218	VIRMA	Q69YN4	1812 aa	Known RBP	34	■■■■□ 3.03
THRA-208	ENST00000578218	MYH14	Q7Z406	1995 aa	Known RBP	34	■■■■□ 3.03
THRA-208	ENST00000578218	RC3H1	Q5TC82	1133 aa	Known RBP	33.99	■■■■□ 3.03
THRA-208	ENST00000578218	PXDNL	A1KZ92	1463 aa		33.99	■■■■□ 3.03
THRA-208	ENST00000578218	C10orf71	Q711Q0	1435 aa		33.97	■■■■□ 3.03
THRA-208	ENST00000578218	PTCD1	O75127	700 aa	Known RBP	33.97	■■■■□ 3.03
THRA-208	ENST00000578218	IL13	P35225	146 aa		33.97	■■■■□ 3.03
THRA-208	ENST00000578218	RFC4	P35249	363 aa		33.96	■■■■□ 3.03
THRA-208	ENST00000578218	NLGN1	Q8N2Q7	840 aa		33.96	■■■■□ 3.03
THRA-208	ENST00000578218	ARHGEF1	Q92888	912 aa	Known RBP	33.96	■■■■□ 3.03
THRA-208	ENST00000578218	GPBP1L1	Q9HC44	474 aa	Predicted RBP	33.96	■■■■□ 3.03
THRA-208	ENST00000578218	KIF7	Q2M1P5	1343 aa		33.96	■■■■□ 3.03
THRA-208	ENST00000578218	AMER1	Q5JTC6	1135 aa	Predicted RBP	33.95	■■■■□ 3.03
THRA-208	ENST00000578218	RPS6KA4	O75676	772 aa		33.94	■■■■□ 3.02
THRA-208	ENST00000578218	NFATC2IP	Q8NCF5	419 aa		33.93	■■■■□ 3.02
THRA-208	ENST00000578218	ZNF526	Q8TF50	670 aa	Predicted RBP	33.93	■■■■□ 3.02
THRA-208	ENST00000578218	CCDC87	Q9NVE4	849 aa		33.92	■■■■□ 3.02
THRA-208	ENST00000578218	GYS1	P13807	737 aa		33.91	■■■■□ 3.02
THRA-208	ENST00000578218	PARP3	Q9Y6F1	533 aa		33.9	■■■■□ 3.02
THRA-208	ENST00000578218	BRCA1	P38398	1863 aa	Known RBP	33.9	■■■■□ 3.02
THRA-208	ENST00000578218	MRC1	P22897	1456 aa		33.89	■■■■□ 3.02
THRA-208	ENST00000578218	CRKL	P46109	303 aa	Known RBP	33.89	■■■■□ 3.02
THRA-208	ENST00000578218	AKAP4	Q5JQC9	854 aa		33.89	■■■■□ 3.02
THRA-208	ENST00000578218	TGFB2	P61812	414 aa		33.88	■■■■□ 3.01
THRA-208	ENST00000578218	BCS1L	Q9Y276	419 aa		33.86	■■■■□ 3.01
THRA-208	ENST00000578218	HMOX1	P09601	288 aa		33.85	■■■■□ 3.01
THRA-208	ENST00000578218		A0A0G2JLW4	131 aa		33.83	■■■■□ 3.01
THRA-208	ENST00000578218	SLC52A2	Q9HAB3	445 aa		33.83	■■■■□ 3.01
THRA-208	ENST00000578218	ADAMTS7	Q9UKP4	1686 aa		33.83	■■■■□ 3.01
THRA-208	ENST00000578218	USP42	Q9H9J4	1324 aa	Known RBP	33.82	■■■■□ 3.01
THRA-208	ENST00000578218	CC2D1B	Q5T0F9	858 aa	Known RBP	33.82	■■■■□ 3
THRA-208	ENST00000578218	SRP68	Q9UHB9	627 aa	Known RBP	33.82	■■■■□ 3
THRA-208	ENST00000578218	ARFGEF1	Q9Y6D6	1849 aa		33.81	■■■■□ 3
THRA-208	ENST00000578218	KCP	Q6ZWJ8	1503 aa		33.79	■■■■□ 3
THRA-208	ENST00000578218	DIAPH1	O60610	1272 aa	Known RBP	33.79	■■■■□ 3
THRA-208	ENST00000578218	DPEP1	P16444	411 aa		33.79	■■■■□ 3
THRA-208	ENST00000578218	LGR6	Q9HBX8	967 aa		33.78	■■■■□ 3
THRA-208	ENST00000578218	RNMT	O43148	476 aa	Known RBP	33.77	■■■■□ 3
THRA-208	ENST00000578218	DNAJC10	Q8IXB1	793 aa		33.77	■■■■□ 3
THRA-208	ENST00000578218	UBR2	Q8IWV8	1755 aa		33.77	■■■■□ 3
THRA-208	ENST00000578218	FCHSD2	O94868	740 aa		33.76	■■■□□ 2.99
THRA-208	ENST00000578218	FKBP8	Q14318	412 aa		33.76	■■■□□ 2.99
THRA-208	ENST00000578218	PER1	O15534	1290 aa	Predicted RBP	33.74	■■■□□ 2.99
THRA-208	ENST00000578218	SLC39A6	Q13433	755 aa		33.74	■■■□□ 2.99
THRA-208	ENST00000578218	INTS5	Q6P9B9	1019 aa	Known RBP	33.74	■■■□□ 2.99
THRA-208	ENST00000578218	COL3A1	P02461	1466 aa	Predicted RBP	33.74	■■■□□ 2.99
THRA-208	ENST00000578218	CEP350	Q5VT06	3117 aa		33.73	■■■□□ 2.99
THRA-208	ENST00000578218	DDR1	Q08345	913 aa		33.73	■■■□□ 2.99
THRA-208	ENST00000578218	MTHFSD	Q2M296	383 aa	Known RBP	33.73	■■■□□ 2.99
THRA-208	ENST00000578218	ARHGAP27	Q6ZUM4	889 aa		33.73	■■■□□ 2.99
THRA-208	ENST00000578218	ZPR1	O75312	459 aa		33.72	■■■□□ 2.99
THRA-208	ENST00000578218	CNGB1	Q14028	1251 aa	Predicted RBP	33.72	■■■□□ 2.99
THRA-208	ENST00000578218	SOS1	Q07889	1333 aa	Predicted RBP	33.72	■■■□□ 2.99
THRA-208	ENST00000578218	COL15A1	P39059	1388 aa		33.71	■■■□□ 2.99
THRA-208	ENST00000578218	AFDN	P55196	1824 aa	Known RBP	33.69	■■■□□ 2.98
THRA-208	ENST00000578218	USPL1	Q5W0Q7	1092 aa		33.68	■■■□□ 2.98
THRA-208	ENST00000578218	NPC1L1	Q9UHC9	1359 aa		33.68	■■■□□ 2.98
THRA-208	ENST00000578218	CYP19A1	P11511	503 aa	Predicted RBP	33.67	■■■□□ 2.98
THRA-208	ENST00000578218	PIM2	Q9P1W9	311 aa		33.67	■■■□□ 2.98
THRA-208	ENST00000578218	POLRMT	O00411	1230 aa	Known RBP	33.66	■■■□□ 2.98
THRA-208	ENST00000578218	U2SURP	O15042	1029 aa	Known RBP	33.66	■■■□□ 2.98
THRA-208	ENST00000578218	HSPA6	P17066	643 aa		33.66	■■■□□ 2.98

Retrieved 100 of 20,778 RNA–protein pairs in 9 ms