RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 H7C1W4 665 aa6.65□□□□□ -1.34
NUP88-209ENST00000574855 ATP9BO43861 1147 aa6.65□□□□□ -1.34
NUP88-209ENST00000574855 TLR1Q15399 786 aa6.65□□□□□ -1.34
NUP88-209ENST00000574855 TBC1D9Q6ZT07 1266 aa6.65□□□□□ -1.34
NUP88-209ENST00000574855 TRIM50Q86XT4 487 aa6.65□□□□□ -1.34
NUP88-209ENST00000574855 DEPDC4Q8N2C3 294 aa6.65□□□□□ -1.34
NUP88-209ENST00000574855 PCDHGA11Q9Y5H2 935 aa6.65□□□□□ -1.34
NUP88-209ENST00000574855 F11P03951 625 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 PHKA2P46019 1235 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 SMTNP53814 917 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 GTF2IP78347 998 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 PSME1Q06323 249 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 FOXR1Q6PIV2 292 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 PPARGC1BQ86YN6 1023 aaKnown RBP6.64□□□□□ -1.35
NUP88-209ENST00000574855 PLEKHM2Q8IWE5 1019 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 TRIM22Q8IYM9 498 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 CALR3Q96L12 384 aaKnown RBP6.64□□□□□ -1.35
NUP88-209ENST00000574855 UCN2Q96RP3 112 aa6.64□□□□□ -1.35
NUP88-209ENST00000574855 COL25A1Q9BXS0 654 aaPredicted RBP6.64□□□□□ -1.35
NUP88-209ENST00000574855 USP17L3A6NCW0 530 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 USP17L4A6NCW7 530 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 BACH1O14867 736 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 USP17L2Q6R6M4 530 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 USP17L1Q7RTZ2 530 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 ZSCAN1Q8NBB4 408 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 RHBDD1Q8TEB9 315 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 SLC4A9Q96Q91 983 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 SERTAD1Q9UHV2 236 aa6.63□□□□□ -1.35
NUP88-209ENST00000574855 A0A1B0GTH6 734 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 FAM181BA6NEQ2 426 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 TMEM229AB2RXF0 380 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 ATP1A2P50993 1020 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 DBN1Q16643 649 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 C4orf17Q53FE4 359 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 CNTNAP3BQ96NU0 1288 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 CNTNAP3Q9BZ76 1288 aa6.62□□□□□ -1.35
NUP88-209ENST00000574855 CUEDC1Q9NWM3 386 aaPredicted RBP6.62□□□□□ -1.35
NUP88-209ENST00000574855 TFIP11Q9UBB9 837 aaKnown RBP6.62□□□□□ -1.35
NUP88-209ENST00000574855 CDK2AP1O14519 115 aa6.61□□□□□ -1.35
NUP88-209ENST00000574855 CSB-PGBD3P0DP91 1061 aa6.61□□□□□ -1.35
NUP88-209ENST00000574855 PGBD3Q8N328 593 aa6.61□□□□□ -1.35
NUP88-209ENST00000574855 ZNF837Q96EG3 531 aaPredicted RBP6.61□□□□□ -1.35
NUP88-209ENST00000574855 NIFKQ9BYG3 293 aaKnown RBP6.61□□□□□ -1.35
NUP88-209ENST00000574855 MKRN1Q9UHC7 482 aaKnown RBP6.61□□□□□ -1.35
NUP88-209ENST00000574855 A6NJY4 79 aa6.6□□□□□ -1.35
NUP88-209ENST00000574855 KRT76Q01546 638 aa6.6□□□□□ -1.35
NUP88-209ENST00000574855 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.6□□□□□ -1.35
NUP88-209ENST00000574855 TRERF1Q96PN7 1200 aa6.6□□□□□ -1.35
NUP88-209ENST00000574855 NUCKS1Q9H1E3 243 aaKnown RBP6.6□□□□□ -1.35
NUP88-209ENST00000574855 GPAMQ9HCL2 828 aa6.6□□□□□ -1.35
NUP88-209ENST00000574855 ZNF777Q9ULD5 760 aaPredicted RBP6.6□□□□□ -1.35
NUP88-209ENST00000574855 PALM3A6NDB9 673 aaPredicted RBP6.59□□□□□ -1.35
NUP88-209ENST00000574855 ZBTB7BO15156 539 aaPredicted RBP6.59□□□□□ -1.35
NUP88-209ENST00000574855 LORP23490 312 aaPredicted RBP6.59□□□□□ -1.35
NUP88-209ENST00000574855 MTFR1Q15390 333 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 RNFT1Q5M7Z0 435 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 CCDC102BQ68D86 513 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 LARGE2Q8N3Y3 721 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 OGFOD1Q8N543 542 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 TPCN2Q8NHX9 752 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 GTPBP3Q969Y2 492 aaKnown RBP6.59□□□□□ -1.35
NUP88-209ENST00000574855 AIDAQ96BJ3 306 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 PPP1R12CQ9BZL4 782 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 DNAAF2Q9NVR5 837 aaKnown RBP6.59□□□□□ -1.35
NUP88-209ENST00000574855 ZNF358Q9NW07 568 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 RBM19Q9Y4C8 960 aaKnown RBP6.59□□□□□ -1.35
NUP88-209ENST00000574855 GTF3C3Q9Y5Q9 886 aa6.59□□□□□ -1.35
NUP88-209ENST00000574855 MSX1P28360 303 aa6.58□□□□□ -1.36
NUP88-209ENST00000574855 PLA2G4AP47712 749 aa6.58□□□□□ -1.36
NUP88-209ENST00000574855 CLDN10P78369 228 aa6.58□□□□□ -1.36
NUP88-209ENST00000574855 LBRQ14739 615 aaKnown RBP6.58□□□□□ -1.36
NUP88-209ENST00000574855 C1orf216Q8TAB5 229 aa6.58□□□□□ -1.36
NUP88-209ENST00000574855 SCHIP1Q9P0W5 487 aaPredicted RBP6.58□□□□□ -1.36
NUP88-209ENST00000574855 MAFBQ9Y5Q3 323 aaPredicted RBP6.58□□□□□ -1.36
NUP88-209ENST00000574855 GPR25O00155 361 aa6.57□□□□□ -1.36
NUP88-209ENST00000574855 SUZ12Q15022 739 aaKnown RBP6.57□□□□□ -1.36
NUP88-209ENST00000574855 EFHC2Q5JST6 749 aa6.57□□□□□ -1.36
NUP88-209ENST00000574855 ZMYND15Q9H091 742 aa6.57□□□□□ -1.36
NUP88-209ENST00000574855 RUBCNLQ9H714 662 aa6.57□□□□□ -1.36
NUP88-209ENST00000574855 CABP1Q9NZU7 370 aa6.57□□□□□ -1.36
NUP88-209ENST00000574855 IQSEC3Q9UPP2 1182 aaPredicted RBP6.57□□□□□ -1.36
NUP88-209ENST00000574855 SLURP2P0DP57 97 aa6.56□□□□□ -1.36
NUP88-209ENST00000574855 RASA1P20936 1047 aa6.56□□□□□ -1.36
NUP88-209ENST00000574855 SRSF11Q05519 484 aaKnown RBP6.56□□□□□ -1.36
NUP88-209ENST00000574855 NBPF1Q3BBV0 1214 aa6.56□□□□□ -1.36
NUP88-209ENST00000574855 TNS4Q8IZW8 715 aa6.56□□□□□ -1.36
NUP88-209ENST00000574855 ZNF594Q96JF6 807 aaPredicted RBP6.56□□□□□ -1.36
NUP88-209ENST00000574855 KIAA1024Q9UPX6 916 aa6.56□□□□□ -1.36
NUP88-209ENST00000574855 M0R2N6 131 aa6.55□□□□□ -1.36
NUP88-209ENST00000574855 TATP17735 454 aaPredicted RBP6.55□□□□□ -1.36
NUP88-209ENST00000574855 LMOD1P29536 600 aaPredicted RBP6.55□□□□□ -1.36
NUP88-209ENST00000574855 GAS6Q14393 721 aa6.55□□□□□ -1.36
NUP88-209ENST00000574855 LARP1Q6PKG0 1096 aaKnown RBP6.55□□□□□ -1.36
NUP88-209ENST00000574855 SIX5Q8N196 739 aa6.55□□□□□ -1.36
NUP88-209ENST00000574855 CFHR5Q9BXR6 569 aa6.55□□□□□ -1.36
NUP88-209ENST00000574855 CRISPLD1Q9H336 500 aa6.55□□□□□ -1.36
NUP88-209ENST00000574855 MBIPQ9NS73 344 aa6.55□□□□□ -1.36
NUP88-209ENST00000574855 NSFL1CQ9UNZ2 370 aaKnown RBP6.55□□□□□ -1.36
NUP88-209ENST00000574855 PHF24Q9UPV7 400 aa6.55□□□□□ -1.36
NUP88-209ENST00000574855 ADAMTS2O95450 1211 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms