RNA–Protein interactions for RNA: ENST00000574003.1

RPAIN-214, Transcript of RPA interacting protein, humanhuman

TSL 4 BASIC

Gene RPAIN, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-214ENST00000574003 POLD1P28340 1107 aa15.34■□□□□ 0.05
RPAIN-214ENST00000574003 CABP4P57796 275 aa15.34■□□□□ 0.05
RPAIN-214ENST00000574003 C1orf141Q5JVX7 400 aa15.34■□□□□ 0.05
RPAIN-214ENST00000574003 RBM42Q9BTD8 480 aaKnown RBP15.34■□□□□ 0.05
RPAIN-214ENST00000574003 COL24A1Q17RW2 1714 aa15.34■□□□□ 0.05
RPAIN-214ENST00000574003 COL3A1P02461 1466 aaPredicted RBP15.33■□□□□ 0.05
RPAIN-214ENST00000574003 UBR3Q6ZT12 1888 aa15.33■□□□□ 0.05
RPAIN-214ENST00000574003 HSP90AB1P08238 724 aaKnown RBP15.33■□□□□ 0.04
RPAIN-214ENST00000574003 NLGN2Q8NFZ4 835 aa15.33■□□□□ 0.04
RPAIN-214ENST00000574003 LGR6Q9HBX8 967 aa15.33■□□□□ 0.04
RPAIN-214ENST00000574003 NPC1L1Q9UHC9 1359 aa15.33■□□□□ 0.04
RPAIN-214ENST00000574003 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.32■□□□□ 0.04
RPAIN-214ENST00000574003 GNPATO15228 680 aa15.32■□□□□ 0.04
RPAIN-214ENST00000574003 NFATC2IPQ8NCF5 419 aa15.32■□□□□ 0.04
RPAIN-214ENST00000574003 PLEKHG2Q9H7P9 1386 aa15.32■□□□□ 0.04
RPAIN-214ENST00000574003 U2SURPO15042 1029 aaKnown RBP15.31■□□□□ 0.04
RPAIN-214ENST00000574003 YY1P25490 414 aa15.31■□□□□ 0.04
RPAIN-214ENST00000574003 MTHFSDQ2M296 383 aaKnown RBP15.31■□□□□ 0.04
RPAIN-214ENST00000574003 DCAF8L1A6NGE4 600 aa15.3■□□□□ 0.04
RPAIN-214ENST00000574003 PTCD1O75127 700 aaKnown RBP15.3■□□□□ 0.04
RPAIN-214ENST00000574003 SCN11AQ9UI33 1791 aa15.29■□□□□ 0.04
RPAIN-214ENST00000574003 AKAP4Q5JQC9 854 aa15.29■□□□□ 0.04
RPAIN-214ENST00000574003 MAP3K5Q99683 1374 aa15.28■□□□□ 0.04
RPAIN-214ENST00000574003 UTRNP46939 3433 aa15.28■□□□□ 0.04
RPAIN-214ENST00000574003 RNMTO43148 476 aaKnown RBP15.28■□□□□ 0.04
RPAIN-214ENST00000574003 SLC39A6Q13433 755 aa15.28■□□□□ 0.04
RPAIN-214ENST00000574003 PELP1Q8IZL8 1130 aaKnown RBP15.28■□□□□ 0.04
RPAIN-214ENST00000574003 MYH14Q7Z406 1995 aaKnown RBP15.27■□□□□ 0.04
RPAIN-214ENST00000574003 VIRMAQ69YN4 1812 aaKnown RBP15.27■□□□□ 0.04
RPAIN-214ENST00000574003 PPP2R1AP30153 589 aa15.27■□□□□ 0.04
RPAIN-214ENST00000574003 FLAD1Q8NFF5 587 aa15.27■□□□□ 0.04
RPAIN-214ENST00000574003 SSFA2P28290 1259 aa15.26■□□□□ 0.03
RPAIN-214ENST00000574003 SLC52A2Q9HAB3 445 aa15.26■□□□□ 0.03
RPAIN-214ENST00000574003 GPR162Q16538 588 aa15.25■□□□□ 0.03
RPAIN-214ENST00000574003 WWC3Q9ULE0 1092 aa15.25■□□□□ 0.03
RPAIN-214ENST00000574003 COL5A3P25940 1745 aaPredicted RBP15.25■□□□□ 0.03
RPAIN-214ENST00000574003 PHACTR3Q96KR7 559 aa15.24■□□□□ 0.03
RPAIN-214ENST00000574003 RTCBQ9Y3I0 505 aaKnown RBP15.24■□□□□ 0.03
RPAIN-214ENST00000574003 TJP1Q07157 1748 aa15.23■□□□□ 0.03
RPAIN-214ENST00000574003 PRKAR2BP31323 418 aa15.23■□□□□ 0.03
RPAIN-214ENST00000574003 CRKLP46109 303 aaKnown RBP15.23■□□□□ 0.03
RPAIN-214ENST00000574003 DNAJC10Q8IXB1 793 aa15.23■□□□□ 0.03
RPAIN-214ENST00000574003 ARHGEF1Q92888 912 aaKnown RBP15.23■□□□□ 0.03
RPAIN-214ENST00000574003 CNTNAP4Q9C0A0 1308 aa15.22■□□□□ 0.03
RPAIN-214ENST00000574003 YBX3P16989 372 aaKnown RBP eCLIP15.22■□□□□ 0.03
RPAIN-214ENST00000574003 HMGB2P26583 209 aaKnown RBP15.22■□□□□ 0.03
RPAIN-214ENST00000574003 TRAPPC3LQ5T215 181 aa15.22■□□□□ 0.03
RPAIN-214ENST00000574003 CFAP53Q96M91 514 aa15.22■□□□□ 0.03
RPAIN-214ENST00000574003 RSPH6AQ9H0K4 717 aa15.22■□□□□ 0.03
RPAIN-214ENST00000574003 ZNF831Q5JPB2 1677 aa15.22■□□□□ 0.03
RPAIN-214ENST00000574003 GOLGB1Q14789 3259 aaKnown RBP15.21■□□□□ 0.03
RPAIN-214ENST00000574003 MRC1P22897 1456 aa15.21■□□□□ 0.03
RPAIN-214ENST00000574003 RPS6KA4O75676 772 aa15.21■□□□□ 0.03
RPAIN-214ENST00000574003 RC3H1Q5TC82 1133 aaKnown RBP15.21■□□□□ 0.03
RPAIN-214ENST00000574003 IL17REQ8NFR9 667 aa15.21■□□□□ 0.03
RPAIN-214ENST00000574003 SRP68Q9UHB9 627 aaKnown RBP15.21■□□□□ 0.03
RPAIN-214ENST00000574003 ADAMTS7Q9UKP4 1686 aa15.2■□□□□ 0.02
RPAIN-214ENST00000574003 MMP10P09238 476 aa15.2■□□□□ 0.02
RPAIN-214ENST00000574003 U2AF1L5P0DN76 240 aaPredicted RBP15.2■□□□□ 0.02
RPAIN-214ENST00000574003 U2AF1Q01081 240 aaKnown RBP eCLIP15.2■□□□□ 0.02
RPAIN-214ENST00000574003 INTS5Q6P9B9 1019 aaKnown RBP15.2■□□□□ 0.02
RPAIN-214ENST00000574003 KCPQ6ZWJ8 1503 aa15.19■□□□□ 0.02
RPAIN-214ENST00000574003 GYS1P13807 737 aa15.19■□□□□ 0.02
RPAIN-214ENST00000574003 GAS2L2Q8NHY3 880 aa15.19■□□□□ 0.02
RPAIN-214ENST00000574003 C4AP0C0L4 1744 aa15.19■□□□□ 0.02
RPAIN-214ENST00000574003 CHD4Q14839 1912 aa15.19■□□□□ 0.02
RPAIN-214ENST00000574003 GNAT3A8MTJ3 354 aa15.18■□□□□ 0.02
RPAIN-214ENST00000574003 RFC4P35249 363 aa15.18■□□□□ 0.02
RPAIN-214ENST00000574003 CD2APQ9Y5K6 639 aa15.18■□□□□ 0.02
RPAIN-214ENST00000574003 KCNQ3O43525 872 aa15.17■□□□□ 0.02
RPAIN-214ENST00000574003 NUDCQ9Y266 331 aa15.17■□□□□ 0.02
RPAIN-214ENST00000574003 CYP19A1P11511 503 aaPredicted RBP15.16■□□□□ 0.02
RPAIN-214ENST00000574003 FKBP8Q14318 412 aa15.16■□□□□ 0.02
RPAIN-214ENST00000574003 CCDC87Q9NVE4 849 aa15.16■□□□□ 0.02
RPAIN-214ENST00000574003 CICQ96RK0 1608 aaPredicted RBP15.16■□□□□ 0.02
RPAIN-214ENST00000574003 ADRA2BP18089 450 aa15.15■□□□□ 0.02
RPAIN-214ENST00000574003 TEFQ10587 303 aa15.15■□□□□ 0.02
RPAIN-214ENST00000574003 DDX10Q13206 875 aaKnown RBP15.15■□□□□ 0.02
RPAIN-214ENST00000574003 DCTN1Q14203 1278 aa15.15■□□□□ 0.02
RPAIN-214ENST00000574003 ZNF784Q8NCA9 323 aaPredicted RBP15.15■□□□□ 0.02
RPAIN-214ENST00000574003 ZBTB1Q9Y2K1 713 aa15.15■□□□□ 0.02
RPAIN-214ENST00000574003 SIPA1L3O60292 1781 aaPredicted RBP15.14■□□□□ 0.01
RPAIN-214ENST00000574003 MCM10Q7L590 875 aa15.14■□□□□ 0.01
RPAIN-214ENST00000574003 NLGN1Q8N2Q7 840 aa15.14■□□□□ 0.01
RPAIN-214ENST00000574003 ZNF496Q96IT1 587 aaPredicted RBP15.14■□□□□ 0.01
RPAIN-214ENST00000574003 SOS1Q07889 1333 aaPredicted RBP15.14■□□□□ 0.01
RPAIN-214ENST00000574003 UBR2Q8IWV8 1755 aa15.13■□□□□ 0.01
RPAIN-214ENST00000574003 CANXP27824 592 aaKnown RBP15.13■□□□□ 0.01
RPAIN-214ENST00000574003 DDR1Q08345 913 aa15.13■□□□□ 0.01
RPAIN-214ENST00000574003 USPL1Q5W0Q7 1092 aa15.13■□□□□ 0.01
RPAIN-214ENST00000574003 TTC5Q8N0Z6 440 aa15.13■□□□□ 0.01
RPAIN-214ENST00000574003 USP42Q9H9J4 1324 aaKnown RBP15.13■□□□□ 0.01
RPAIN-214ENST00000574003 CEMIPQ8WUJ3 1361 aa15.12■□□□□ 0.01
RPAIN-214ENST00000574003 N4BP2Q86UW6 1770 aaPredicted RBP15.12■□□□□ 0.01
RPAIN-214ENST00000574003 FCHSD2O94868 740 aa15.12■□□□□ 0.01
RPAIN-214ENST00000574003 ZNF790Q6PG37 636 aa15.12■□□□□ 0.01
RPAIN-214ENST00000574003 A0A0G2JLW4 131 aa15.11■□□□□ 0.01
RPAIN-214ENST00000574003 PARP3Q9Y6F1 533 aa15.11■□□□□ 0.01
RPAIN-214ENST00000574003 PXDNLA1KZ92 1463 aa15.11■□□□□ 0.01
RPAIN-214ENST00000574003 KIAA1551Q9HCM1 1747 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms